Wall clock time and date at job start Tue Mar 31 2020 16:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 111.00024 * 2 1 4 4 C 1.50706 * 109.47274 * 66.04736 * 3 2 1 5 5 C 1.31155 * 120.00368 * 124.99836 * 4 3 2 6 6 Cl 1.73599 * 120.00322 * 180.02562 * 5 4 3 7 7 C 1.46898 * 110.99946 * 236.04469 * 2 1 3 8 8 H 1.08999 * 109.49718 * 179.02355 * 7 2 1 9 9 C 1.53040 * 109.49843 * 299.11853 * 7 2 1 10 10 C 1.53039 * 109.53970 * 181.31977 * 9 7 2 11 11 C 1.53197 * 109.30913 * 298.63272 * 10 9 7 12 12 N 1.46924 * 108.77285 * 54.63700 * 11 10 9 13 13 C 1.34782 * 120.62935 * 126.41734 * 12 11 10 14 14 O 1.21281 * 119.99862 * 179.97438 * 13 12 11 15 15 C 1.50690 * 120.00044 * 359.96926 * 13 12 11 16 16 S 1.81000 * 109.47270 * 180.02562 * 15 13 12 17 17 C 1.76203 * 100.00079 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99978 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99855 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99978 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99901 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47033 * 60.00054 * 21 19 17 23 23 H 1.48502 * 109.47047 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47163 * 299.99741 * 21 19 17 25 25 C 1.46925 * 118.73983 * 306.38851 * 12 11 10 26 26 H 1.08998 * 109.46977 * 59.99778 * 1 2 3 27 27 H 1.08993 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46925 * 300.00084 * 1 2 3 29 29 H 1.08989 * 109.47367 * 306.04296 * 3 2 1 30 30 H 1.09001 * 109.46711 * 186.04311 * 3 2 1 31 31 H 1.07998 * 119.99501 * 304.99721 * 4 3 2 32 32 H 1.08005 * 119.99816 * 359.72317 * 5 4 3 33 33 H 1.09006 * 109.45875 * 301.34128 * 9 7 2 34 34 H 1.08999 * 109.46189 * 61.29369 * 9 7 2 35 35 H 1.08999 * 109.49789 * 178.68595 * 10 9 7 36 36 H 1.08994 * 109.52697 * 58.59978 * 10 9 7 37 37 H 1.08997 * 109.58612 * 294.84513 * 11 10 9 38 38 H 1.08997 * 109.70154 * 174.49251 * 11 10 9 39 39 H 1.09001 * 109.47516 * 300.00317 * 15 13 12 40 40 H 1.09003 * 109.47201 * 60.00550 * 15 13 12 41 41 H 0.96995 * 119.99909 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.58508 * 293.82020 * 25 12 11 43 43 H 1.08999 * 109.70276 * 173.47107 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2985 5 6 2.5772 2.5783 2.0428 6 17 2.1643 3.3561 3.5389 7 6 1.9955 -0.7660 -1.1376 8 1 3.0849 -0.7355 -1.1237 9 6 1.5231 -2.2183 -1.0379 10 6 2.0980 -3.0247 -2.2046 11 6 1.5871 -2.4397 -3.5251 12 7 1.9109 -1.0071 -3.5642 13 6 2.5865 -0.4840 -4.6066 14 8 2.8473 0.7002 -4.6273 15 6 3.0180 -1.3707 -5.7461 16 16 3.8971 -0.3814 -6.9808 17 6 4.2741 -1.6323 -8.1632 18 1 3.9640 -2.6518 -7.9881 19 6 4.9706 -1.3074 -9.3190 20 7 5.3490 -0.0648 -9.5321 21 14 5.3708 -2.6336 -10.5722 22 1 4.1103 -3.2397 -11.0712 23 1 6.1143 -2.0327 -11.7086 24 1 6.2055 -3.6826 -9.9333 25 6 1.4835 -0.1554 -2.4459 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5613 1.9273 -0.8308 30 1 3.0798 1.3443 -0.1082 31 1 0.6058 2.0940 1.6160 32 1 3.6089 2.5275 1.7274 33 1 1.8654 -2.6476 -0.0962 34 1 0.4343 -2.2495 -1.0764 35 1 1.7802 -4.0639 -2.1200 36 1 3.1865 -2.9740 -2.1812 37 1 0.5072 -2.5723 -3.5899 38 1 2.0682 -2.9461 -4.3619 39 1 3.6787 -2.1513 -5.3691 40 1 2.1403 -1.8272 -6.2037 41 1 5.8353 0.1623 -10.3400 42 1 0.3951 -0.1016 -2.4227 43 1 1.8963 0.8459 -2.5680 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267099419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:34 Heat of formation + Delta-G solvation = -38.989737 kcal Electronic energy + Delta-G solvation = -23841.911359 eV Core-core repulsion = 20266.824314 eV Total energy + Delta-G solvation = -3575.087045 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45903 -39.62539 -37.79785 -37.18522 -34.59724 -34.53918 -33.18019 -31.72455 -29.89119 -28.20687 -27.70094 -26.16365 -25.61836 -23.08284 -21.38902 -20.92344 -20.20431 -19.51704 -18.25456 -17.32289 -17.15154 -16.88312 -16.77697 -16.41947 -16.07909 -15.72644 -15.43369 -14.99648 -14.79625 -14.75536 -14.46343 -14.30473 -14.00177 -13.71131 -13.51931 -13.30338 -13.17362 -13.00291 -12.86901 -12.64330 -12.60412 -12.54429 -12.15794 -11.88890 -11.82574 -11.77056 -11.70149 -11.42572 -11.13309 -10.94169 -10.27779 -10.21788 -9.90268 -9.15554 -8.68611 -8.35002 -6.13825 0.90680 1.24100 1.35058 1.43865 1.45022 1.53037 1.54940 2.05168 2.26930 2.95774 2.99052 3.23765 3.59236 3.71560 3.87731 3.90046 3.97884 4.02949 4.15406 4.19552 4.24439 4.26093 4.39984 4.42407 4.52397 4.59769 4.60912 4.65719 4.78386 4.85274 4.91373 5.07113 5.11383 5.23110 5.26008 5.32272 5.39215 5.40931 5.46474 5.95191 5.99967 6.18926 6.25130 7.05950 7.10063 8.73965 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.020216 B = 0.002200 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.736305 B =12726.235317 C =13721.786158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.524 5.524 3 C 0.081 3.919 4 C -0.127 4.127 5 C -0.103 4.103 6 Cl -0.103 7.103 7 C 0.079 3.921 8 H 0.072 0.928 9 C -0.103 4.103 10 C -0.128 4.128 11 C 0.096 3.904 12 N -0.603 5.603 13 C 0.531 3.469 14 O -0.568 6.568 15 C -0.122 4.122 16 S -0.154 6.154 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.261 1.261 25 C 0.082 3.918 26 H 0.029 0.971 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.155 0.845 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.271 0.729 42 H 0.081 0.919 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.735 -5.532 24.157 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.246 5.246 3 C -0.047 4.047 4 C -0.146 4.146 5 C -0.148 4.148 6 Cl -0.075 7.075 7 C -0.031 4.031 8 H 0.090 0.910 9 C -0.141 4.141 10 C -0.167 4.167 11 C -0.026 4.026 12 N -0.337 5.337 13 C 0.319 3.681 14 O -0.447 6.447 15 C -0.273 4.273 16 S 0.073 5.927 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.185 1.185 25 C -0.042 4.042 26 H 0.048 0.952 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.147 0.853 32 H 0.172 0.828 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.157 -3.837 24.606 27.289 hybrid contribution -0.072 -0.892 -1.614 1.846 sum -11.229 -4.729 22.992 26.021 Atomic orbital electron populations 1.22661 0.86324 1.03630 1.01281 1.62395 1.09262 1.12338 1.40653 1.21129 1.00773 0.88643 0.94127 1.22991 0.99916 0.96456 0.95240 1.24527 1.01118 1.00776 0.88409 1.98367 1.94141 1.80340 1.34656 1.22063 0.99533 0.95183 0.86274 0.91008 1.21572 1.01609 0.91769 0.99164 1.21907 1.01003 1.00895 0.92847 1.22126 1.02132 0.78181 1.00147 1.48040 1.55725 1.10704 1.19263 1.20180 0.77021 0.87692 0.83179 1.90668 1.56607 1.18109 1.79336 1.23356 1.04374 1.02087 0.97481 1.85606 1.71519 1.16434 1.19113 1.23156 1.42702 0.96205 1.07237 0.89795 1.26151 0.94505 0.98760 0.99815 1.70181 1.37266 1.19830 1.27527 0.84999 0.78852 0.77462 0.76663 1.18575 1.20495 1.18543 1.22369 1.00219 0.95051 0.86592 0.95214 0.89371 0.90300 0.93252 0.90223 0.85341 0.82762 0.89796 0.90027 0.87406 0.92282 0.89096 0.89259 0.87390 0.87422 0.92004 0.90063 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 8.57 127.69 1.09 1.19 16 2 N -0.52 -8.04 4.74 -901.17 -4.27 -12.32 16 3 C 0.08 1.33 4.85 85.56 0.42 1.74 16 4 C -0.13 -1.82 8.91 25.49 0.23 -1.59 16 5 C -0.10 -1.51 10.43 67.63 0.71 -0.81 16 6 Cl -0.10 -1.65 29.10 -2.72 -0.08 -1.73 16 7 C 0.08 1.38 2.38 44.99 0.11 1.49 16 8 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 9 C -0.10 -1.29 4.93 30.62 0.15 -1.14 16 10 C -0.13 -1.68 6.08 30.67 0.19 -1.49 16 11 C 0.10 1.69 6.34 86.36 0.55 2.24 16 12 N -0.60 -15.88 2.97 -818.93 -2.43 -18.31 16 13 C 0.53 20.06 7.72 87.65 0.68 20.74 16 14 O -0.57 -26.77 15.28 -3.03 -0.05 -26.81 16 15 C -0.12 -4.85 4.50 71.23 0.32 -4.53 16 16 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 17 C -0.55 -30.93 9.50 67.95 0.65 -30.28 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 21 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 25 C 0.08 1.86 5.01 86.36 0.43 2.29 16 26 H 0.03 0.38 6.40 -2.39 -0.02 0.37 16 27 H 0.09 0.83 6.15 -2.39 -0.01 0.81 16 28 H 0.08 0.81 6.64 -2.38 -0.02 0.80 16 29 H 0.05 0.90 7.07 -2.39 -0.02 0.89 16 30 H 0.08 1.39 7.65 -2.39 -0.02 1.37 16 31 H 0.13 1.65 6.95 -2.91 -0.02 1.63 16 32 H 0.15 1.96 7.84 -2.91 -0.02 1.94 16 33 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 0.81 6.41 -2.39 -0.02 0.80 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.64 5.93 -2.39 -0.01 1.63 16 39 H 0.11 3.87 7.70 -2.40 -0.02 3.85 16 40 H 0.11 3.86 7.94 -2.39 -0.02 3.84 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.08 1.59 6.21 -2.38 -0.01 1.58 16 43 H 0.06 1.84 5.92 -2.39 -0.01 1.83 16 Total: -1.00 -74.81 367.01 1.30 -73.51 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 1.01 Total: 14.85 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.98 Total: -8.97 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -6.42 Total: -86.33 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -74.81 1.30 -73.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267099419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.521 kcal (2) G-P(sol) polarization free energy of solvation -74.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds