Wall clock time and date at job start Tue Mar 31 2020 16:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31164 * 1 3 3 Cl 1.73599 * 119.99911 * 2 1 4 4 C 1.50700 * 119.99998 * 180.02562 * 2 1 3 5 5 N 1.46897 * 109.47340 * 114.99889 * 4 2 1 6 6 C 1.46902 * 110.99874 * 293.95257 * 5 4 2 7 7 C 1.46903 * 111.00054 * 170.00162 * 5 4 2 8 8 H 1.08993 * 109.49198 * 310.06262 * 7 5 4 9 9 C 1.53044 * 109.49417 * 190.00121 * 7 5 4 10 10 C 1.53036 * 109.53364 * 178.68310 * 9 7 5 11 11 C 1.53195 * 109.31512 * 61.36389 * 10 9 7 12 12 N 1.46921 * 108.77515 * 305.36493 * 11 10 9 13 13 C 1.34782 * 120.62937 * 233.63032 * 12 11 10 14 14 O 1.21277 * 119.99742 * 179.97438 * 13 12 11 15 15 C 1.50696 * 119.99988 * 359.97438 * 13 12 11 16 16 S 1.80998 * 109.46990 * 180.02562 * 15 13 12 17 17 C 1.76209 * 100.00032 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99760 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99849 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99581 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00391 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47284 * 89.99912 * 21 19 17 23 23 H 1.48502 * 109.47375 * 210.00344 * 21 19 17 24 24 H 1.48503 * 109.46967 * 330.00383 * 21 19 17 25 25 C 1.46918 * 118.73999 * 53.60677 * 12 11 10 26 26 H 1.07997 * 120.00213 * 0.02562 * 1 2 3 27 27 H 1.07995 * 119.99985 * 179.72922 * 1 2 3 28 28 H 1.09001 * 109.46875 * 235.00306 * 4 2 1 29 29 H 1.09004 * 109.46660 * 354.99716 * 4 2 1 30 30 H 1.09003 * 109.46796 * 59.99977 * 6 5 4 31 31 H 1.09001 * 109.47059 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47568 * 300.00136 * 6 5 4 33 33 H 1.09004 * 109.45771 * 298.69841 * 9 7 5 34 34 H 1.08995 * 109.45732 * 58.67439 * 9 7 5 35 35 H 1.09006 * 109.49831 * 181.31503 * 10 9 7 36 36 H 1.08996 * 109.50127 * 301.41353 * 10 9 7 37 37 H 1.08995 * 109.58606 * 65.15421 * 11 10 9 38 38 H 1.09000 * 109.58571 * 185.43243 * 11 10 9 39 39 H 1.08995 * 109.47252 * 299.99958 * 15 13 12 40 40 H 1.09004 * 109.47134 * 60.00460 * 15 13 12 41 41 H 0.96998 * 119.99576 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.59091 * 186.60589 * 25 12 11 43 43 H 1.08993 * 109.58786 * 66.18115 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 -0.0006 5 7 2.8169 -1.4360 -1.2558 6 6 1.9080 -1.5567 -2.4036 7 6 3.7451 -2.5731 -1.1975 8 1 4.3329 -2.5162 -0.2814 9 6 4.6804 -2.5316 -2.4081 10 6 5.6691 -3.6971 -2.3311 11 6 4.8967 -5.0197 -2.3621 12 7 3.8941 -5.0070 -1.2882 13 6 3.8410 -6.0073 -0.3864 14 8 3.0090 -5.9850 0.4957 15 6 4.8155 -7.1534 -0.4742 16 16 4.4905 -8.3257 0.8659 17 6 5.7365 -9.5260 0.5314 18 1 6.4052 -9.3912 -0.3058 19 6 5.8577 -10.6452 1.3434 20 7 6.7882 -11.5420 1.0932 21 14 4.7006 -10.8787 2.7911 22 1 3.5019 -11.6358 2.3496 23 1 5.3961 -11.6343 3.8638 24 1 4.2840 -9.5514 3.3108 25 6 2.9508 -3.8830 -1.2156 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0044 28 1 2.7572 -1.3254 0.8413 29 1 1.3601 -2.1316 0.0887 30 1 1.2789 -0.6686 -2.4639 31 1 2.4905 -1.6518 -3.3199 32 1 1.2800 -2.4389 -2.2787 33 1 4.0937 -2.6129 -3.3232 34 1 5.2290 -1.5897 -2.4109 35 1 6.3499 -3.6535 -3.1813 36 1 6.2389 -3.6303 -1.4044 37 1 4.3989 -5.1297 -3.3254 38 1 5.5869 -5.8496 -2.2107 39 1 4.6984 -7.6573 -1.4336 40 1 5.8331 -6.7727 -0.3856 41 1 6.8727 -12.3243 1.6604 42 1 2.3567 -3.9626 -0.3052 43 1 2.2943 -3.9002 -2.0854 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267100423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:37 Heat of formation + Delta-G solvation = -15.131450 kcal Electronic energy + Delta-G solvation = -24178.955909 eV Core-core repulsion = 20604.903437 eV Total energy + Delta-G solvation = -3574.052472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46318 -38.65451 -37.11865 -36.12422 -33.64458 -32.46585 -32.34608 -30.62648 -28.80229 -27.92514 -25.70380 -25.21096 -24.84539 -22.35170 -20.40270 -20.24135 -19.12165 -17.75476 -16.95779 -16.47942 -16.15847 -15.95221 -15.39017 -15.09252 -14.93787 -14.68381 -14.38248 -13.98254 -13.86049 -13.58019 -13.31534 -13.18940 -12.87128 -12.80178 -12.70406 -12.25623 -12.13818 -11.99320 -11.83041 -11.54675 -11.30093 -11.12500 -11.08181 -11.02884 -10.99625 -10.70874 -10.60235 -9.88399 -9.57376 -9.50764 -9.08520 -9.02249 -8.51852 -8.33370 -6.94759 -6.31045 -4.03065 1.49032 1.98894 2.65311 2.87293 3.12729 3.31198 3.48416 3.51313 3.62017 4.25497 4.30789 4.40965 4.54629 4.66588 4.71891 4.76723 4.84464 4.96027 5.01078 5.08040 5.09257 5.20852 5.22856 5.24629 5.30064 5.38778 5.52553 5.58111 5.61841 5.66323 5.71341 5.71875 5.77434 5.84838 5.91944 5.96299 6.04914 6.36554 6.62725 6.71135 7.40228 7.92030 8.37757 8.39353 9.15149 10.78152 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.002521 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.245506 B =11102.947412 C =11929.646584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 Cl -0.079 7.079 4 C 0.084 3.916 5 N -0.523 5.523 6 C 0.013 3.987 7 C 0.072 3.928 8 H 0.089 0.911 9 C -0.108 4.108 10 C -0.135 4.135 11 C 0.105 3.895 12 N -0.614 5.614 13 C 0.534 3.466 14 O -0.521 6.521 15 C -0.121 4.121 16 S -0.144 6.144 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.082 3.918 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.090 0.910 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 24.416 -8.896 27.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.082 4.082 3 Cl -0.051 7.051 4 C -0.044 4.044 5 N -0.245 5.245 6 C -0.135 4.135 7 C -0.037 4.037 8 H 0.108 0.892 9 C -0.146 4.146 10 C -0.174 4.174 11 C -0.018 4.018 12 N -0.351 5.351 13 C 0.322 3.678 14 O -0.395 6.395 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.043 4.043 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.406 24.820 -7.598 27.608 hybrid contribution 0.207 -0.996 -0.390 1.089 sum -9.199 23.824 -7.988 26.759 Atomic orbital electron populations 1.24071 0.93874 1.03755 1.00187 1.23213 0.93405 0.88119 1.03428 1.98376 1.78249 1.31721 1.96716 1.21341 0.97238 0.92046 0.93746 1.62251 1.18837 1.41069 1.02363 1.22539 0.96114 1.00817 0.93997 1.22149 0.93835 0.87191 1.00564 0.89246 1.21548 0.96993 0.98941 0.97077 1.21932 0.98032 0.94108 1.03288 1.21789 0.90913 0.98906 0.90223 1.47987 1.34501 1.22311 1.30252 1.20338 0.84592 0.82478 0.80428 1.90679 1.37556 1.77304 1.33996 1.23301 1.01009 0.97549 1.05247 1.84799 1.47939 1.22687 1.36291 1.22298 1.18344 1.07407 1.18768 0.89378 1.24712 0.94982 0.94404 0.97211 1.69938 1.32126 1.10720 1.38855 0.86736 0.81337 0.81149 0.82634 1.19224 1.19922 1.15940 1.22258 0.92674 0.86110 1.03256 0.86912 0.86069 0.88827 0.92044 0.91260 0.90715 0.94884 0.91659 0.90643 0.90177 0.91038 0.91416 0.88953 0.88549 0.88432 0.91925 0.89184 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 14.00 28.97 0.41 -0.76 16 2 C -0.05 -0.44 4.87 -36.07 -0.18 -0.61 16 3 Cl -0.08 -0.71 28.99 -51.86 -1.50 -2.21 16 4 C 0.08 0.71 4.86 -4.98 -0.02 0.69 16 5 N -0.52 -4.43 4.70 -236.18 -1.11 -5.54 16 6 C 0.01 0.10 8.49 60.07 0.51 0.61 16 7 C 0.07 0.66 2.34 -67.59 -0.16 0.51 16 8 H 0.09 0.96 7.93 -51.93 -0.41 0.54 16 9 C -0.11 -0.85 5.06 -26.69 -0.14 -0.98 16 10 C -0.13 -1.10 6.08 -26.61 -0.16 -1.26 16 11 C 0.10 1.04 6.34 -3.71 -0.02 1.02 16 12 N -0.61 -8.04 2.97 -172.78 -0.51 -8.56 16 13 C 0.53 9.49 7.72 -10.99 -0.08 9.41 16 14 O -0.52 -11.11 15.27 5.56 0.08 -11.03 16 15 C -0.12 -2.31 4.50 36.00 0.16 -2.15 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 18 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 19 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 20 N -0.88 -26.38 13.97 55.49 0.78 -25.60 16 21 Si 0.86 21.69 27.74 -169.99 -4.71 16.97 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 25 C 0.08 0.91 5.01 -3.71 -0.02 0.89 16 26 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 27 H 0.12 0.67 7.84 -52.49 -0.41 0.25 16 28 H 0.09 0.85 7.93 -51.93 -0.41 0.44 16 29 H 0.06 0.52 6.85 -51.93 -0.36 0.16 16 30 H 0.07 0.50 7.25 -51.93 -0.38 0.12 16 31 H 0.07 0.50 6.33 -51.93 -0.33 0.17 16 32 H 0.03 0.24 6.34 -51.93 -0.33 -0.09 16 33 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.96 5.95 -51.93 -0.31 0.65 16 39 H 0.10 1.72 7.94 -51.92 -0.41 1.31 16 40 H 0.10 1.74 7.70 -51.91 -0.40 1.34 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.09 1.19 6.06 -51.93 -0.31 0.87 16 43 H 0.07 0.68 6.12 -51.93 -0.32 0.36 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -32.80 365.70 -9.36 -42.16 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.41 Total: -1.58 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 0.51 Total: -4.51 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.85 Total: -39.70 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.97 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.80 -9.36 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267100423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.028 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds