Wall clock time and date at job start Tue Mar 31 2020 16:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31164 * 1 3 3 Cl 1.73599 * 119.99911 * 2 1 4 4 C 1.50700 * 119.99998 * 180.02562 * 2 1 3 5 5 N 1.46897 * 109.47340 * 114.99889 * 4 2 1 6 6 C 1.46902 * 110.99874 * 293.95257 * 5 4 2 7 7 C 1.46903 * 111.00054 * 170.00162 * 5 4 2 8 8 H 1.08993 * 109.49198 * 310.06262 * 7 5 4 9 9 C 1.53044 * 109.49417 * 190.00121 * 7 5 4 10 10 C 1.53036 * 109.53364 * 178.68310 * 9 7 5 11 11 C 1.53195 * 109.31512 * 61.36389 * 10 9 7 12 12 N 1.46921 * 108.77515 * 305.36493 * 11 10 9 13 13 C 1.34782 * 120.62937 * 233.63032 * 12 11 10 14 14 O 1.21277 * 119.99742 * 179.97438 * 13 12 11 15 15 C 1.50696 * 119.99988 * 359.97438 * 13 12 11 16 16 S 1.80998 * 109.46990 * 180.02562 * 15 13 12 17 17 C 1.76209 * 100.00032 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99760 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99849 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99581 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00391 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47284 * 89.99912 * 21 19 17 23 23 H 1.48502 * 109.47375 * 210.00344 * 21 19 17 24 24 H 1.48503 * 109.46967 * 330.00383 * 21 19 17 25 25 C 1.46918 * 118.73999 * 53.60677 * 12 11 10 26 26 H 1.07997 * 120.00213 * 0.02562 * 1 2 3 27 27 H 1.07995 * 119.99985 * 179.72922 * 1 2 3 28 28 H 1.09001 * 109.46875 * 235.00306 * 4 2 1 29 29 H 1.09004 * 109.46660 * 354.99716 * 4 2 1 30 30 H 1.09003 * 109.46796 * 59.99977 * 6 5 4 31 31 H 1.09001 * 109.47059 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47568 * 300.00136 * 6 5 4 33 33 H 1.09004 * 109.45771 * 298.69841 * 9 7 5 34 34 H 1.08995 * 109.45732 * 58.67439 * 9 7 5 35 35 H 1.09006 * 109.49831 * 181.31503 * 10 9 7 36 36 H 1.08996 * 109.50127 * 301.41353 * 10 9 7 37 37 H 1.08995 * 109.58606 * 65.15421 * 11 10 9 38 38 H 1.09000 * 109.58571 * 185.43243 * 11 10 9 39 39 H 1.08995 * 109.47252 * 299.99958 * 15 13 12 40 40 H 1.09004 * 109.47134 * 60.00460 * 15 13 12 41 41 H 0.96998 * 119.99576 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.59091 * 186.60589 * 25 12 11 43 43 H 1.08993 * 109.58786 * 66.18115 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 -0.0006 5 7 2.8169 -1.4360 -1.2558 6 6 1.9080 -1.5567 -2.4036 7 6 3.7451 -2.5731 -1.1975 8 1 4.3329 -2.5162 -0.2814 9 6 4.6804 -2.5316 -2.4081 10 6 5.6691 -3.6971 -2.3311 11 6 4.8967 -5.0197 -2.3621 12 7 3.8941 -5.0070 -1.2882 13 6 3.8410 -6.0073 -0.3864 14 8 3.0090 -5.9850 0.4957 15 6 4.8155 -7.1534 -0.4742 16 16 4.4905 -8.3257 0.8659 17 6 5.7365 -9.5260 0.5314 18 1 6.4052 -9.3912 -0.3058 19 6 5.8577 -10.6452 1.3434 20 7 6.7882 -11.5420 1.0932 21 14 4.7006 -10.8787 2.7911 22 1 3.5019 -11.6358 2.3496 23 1 5.3961 -11.6343 3.8638 24 1 4.2840 -9.5514 3.3108 25 6 2.9508 -3.8830 -1.2156 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0044 28 1 2.7572 -1.3254 0.8413 29 1 1.3601 -2.1316 0.0887 30 1 1.2789 -0.6686 -2.4639 31 1 2.4905 -1.6518 -3.3199 32 1 1.2800 -2.4389 -2.2787 33 1 4.0937 -2.6129 -3.3232 34 1 5.2290 -1.5897 -2.4109 35 1 6.3499 -3.6535 -3.1813 36 1 6.2389 -3.6303 -1.4044 37 1 4.3989 -5.1297 -3.3254 38 1 5.5869 -5.8496 -2.2107 39 1 4.6984 -7.6573 -1.4336 40 1 5.8331 -6.7727 -0.3856 41 1 6.8727 -12.3243 1.6604 42 1 2.3567 -3.9626 -0.3052 43 1 2.2943 -3.9002 -2.0854 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267100423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:37 Heat of formation + Delta-G solvation = -36.323884 kcal Electronic energy + Delta-G solvation = -24179.874882 eV Core-core repulsion = 20604.903437 eV Total energy + Delta-G solvation = -3574.971445 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48740 -39.67433 -37.89917 -36.95534 -34.68305 -34.40860 -33.18420 -31.75336 -29.90720 -28.53207 -27.87844 -26.23886 -25.58034 -23.10896 -21.43650 -20.84633 -20.24362 -19.54150 -18.31158 -17.29324 -17.11548 -17.01959 -16.86532 -16.51435 -15.93188 -15.62902 -15.45141 -15.21033 -14.94680 -14.84559 -14.42493 -14.17906 -14.07387 -13.72869 -13.54158 -13.41292 -13.32665 -13.03032 -12.83765 -12.69793 -12.62130 -12.52177 -12.26238 -11.90212 -11.88926 -11.78288 -11.68657 -11.40170 -11.18139 -10.97989 -10.53120 -10.14000 -10.00113 -9.18538 -9.00981 -8.52411 -6.23526 0.92043 0.96154 1.30117 1.37811 1.44323 1.48060 1.52521 2.01269 2.23905 2.66693 2.85828 2.88650 3.47319 3.62088 3.79316 3.86819 3.96561 4.03058 4.14680 4.18262 4.22032 4.35497 4.38552 4.50879 4.56832 4.58309 4.65266 4.72559 4.77914 4.84271 4.89008 5.07091 5.10828 5.18308 5.24180 5.27745 5.36791 5.43787 5.70106 5.94544 6.00239 6.10690 6.21322 6.92830 7.04039 8.59887 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.002521 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.245506 B =11102.947412 C =11929.646584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.072 4.072 3 Cl -0.091 7.091 4 C 0.086 3.914 5 N -0.523 5.523 6 C 0.014 3.986 7 C 0.080 3.920 8 H 0.071 0.929 9 C -0.101 4.101 10 C -0.128 4.128 11 C 0.096 3.904 12 N -0.601 5.601 13 C 0.533 3.467 14 O -0.565 6.565 15 C -0.105 4.105 16 S -0.178 6.178 17 C -0.527 4.527 18 H 0.064 0.936 19 C 0.046 3.954 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.238 1.238 25 C 0.083 3.917 26 H 0.123 0.877 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.277 0.723 42 H 0.067 0.933 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.487 25.934 -10.236 29.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 Cl -0.063 7.063 4 C -0.042 4.042 5 N -0.246 5.246 6 C -0.133 4.133 7 C -0.029 4.029 8 H 0.089 0.911 9 C -0.139 4.139 10 C -0.167 4.167 11 C -0.026 4.026 12 N -0.335 5.335 13 C 0.321 3.679 14 O -0.444 6.444 15 C -0.255 4.255 16 S 0.048 5.952 17 C -0.674 4.674 18 H 0.082 0.918 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.162 1.162 25 C -0.041 4.041 26 H 0.141 0.859 27 H 0.151 0.849 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.247 26.374 -8.983 29.687 hybrid contribution 0.462 -1.342 -0.118 1.424 sum -9.785 25.032 -9.101 28.376 Atomic orbital electron populations 1.24279 0.93348 1.04790 0.97685 1.23166 0.93720 0.87340 1.05610 1.98369 1.78651 1.32379 1.96914 1.21287 0.96994 0.92465 0.93460 1.62297 1.19259 1.40230 1.02789 1.22574 0.96063 1.00971 0.93723 1.22042 0.93864 0.86341 1.00691 0.91097 1.21525 0.96675 0.99012 0.96707 1.21909 0.98046 0.92940 1.03811 1.22118 0.90512 0.99995 0.89972 1.48006 1.34858 1.21213 1.29425 1.20054 0.83876 0.83061 0.80953 1.90663 1.39222 1.78398 1.36074 1.23264 1.02349 0.96791 1.03122 1.84732 1.46909 1.23649 1.39885 1.22430 1.18635 1.08447 1.17905 0.91820 1.25546 0.96426 0.94258 0.99719 1.70013 1.33630 1.11476 1.40250 0.85881 0.79605 0.81032 0.79943 1.18703 1.18326 1.16183 1.22397 0.92602 0.86144 1.02925 0.85920 0.84890 0.90110 0.92135 0.90967 0.89625 0.94864 0.90137 0.90148 0.87631 0.92295 0.88939 0.89358 0.87020 0.87048 0.91356 0.91476 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 14.00 67.62 0.95 -0.87 16 2 C -0.07 -1.06 4.87 25.48 0.12 -0.94 16 3 Cl -0.09 -1.56 28.99 -2.72 -0.08 -1.64 16 4 C 0.09 1.40 4.86 85.56 0.42 1.82 16 5 N -0.52 -8.07 4.70 -901.14 -4.24 -12.31 16 6 C 0.01 0.17 8.49 127.69 1.08 1.26 16 7 C 0.08 1.36 2.34 44.99 0.11 1.47 16 8 H 0.07 1.49 7.93 -2.39 -0.02 1.47 16 9 C -0.10 -1.30 5.06 30.62 0.16 -1.14 16 10 C -0.13 -1.72 6.08 30.67 0.19 -1.53 16 11 C 0.10 1.64 6.34 86.36 0.55 2.19 16 12 N -0.60 -14.81 2.97 -818.95 -2.43 -17.24 16 13 C 0.53 18.66 7.72 87.65 0.68 19.33 16 14 O -0.56 -24.30 15.27 -3.02 -0.05 -24.34 16 15 C -0.10 -3.95 4.50 71.23 0.32 -3.63 16 16 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 17 C -0.53 -30.47 10.04 67.95 0.68 -29.79 16 18 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 19 C 0.05 2.69 5.50 84.86 0.47 3.16 16 20 N -0.92 -55.48 13.97 21.65 0.30 -55.18 16 21 Si 0.91 44.94 27.74 68.60 1.90 46.84 16 22 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 25 C 0.08 1.74 5.01 86.36 0.43 2.18 16 26 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 27 H 0.13 1.18 7.84 -2.91 -0.02 1.16 16 28 H 0.08 1.50 7.93 -2.39 -0.02 1.48 16 29 H 0.06 0.99 6.85 -2.39 -0.02 0.97 16 30 H 0.07 0.86 7.25 -2.39 -0.02 0.84 16 31 H 0.09 0.86 6.33 -2.39 -0.02 0.85 16 32 H 0.03 0.41 6.34 -2.39 -0.02 0.39 16 33 H 0.08 0.83 6.54 -2.39 -0.02 0.81 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.62 5.95 -2.39 -0.01 1.61 16 39 H 0.11 3.87 7.94 -2.40 -0.02 3.85 16 40 H 0.11 3.89 7.70 -2.39 -0.02 3.87 16 41 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.07 1.76 6.06 -2.39 -0.01 1.75 16 43 H 0.09 1.51 6.12 -2.39 -0.01 1.50 16 Total: -1.00 -71.74 365.70 1.47 -70.27 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.97 Total: 10.16 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 6.14 Total: -6.50 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -6.37 Total: -84.73 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.90 Total: 46.84 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -71.74 1.47 -70.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267100423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.946 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds