Wall clock time and date at job start Tue Mar 31 2020 16:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47292 * 2 1 4 4 C 1.34778 * 119.99891 * 269.99942 * 3 2 1 5 5 O 1.21281 * 120.00044 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99962 * 359.97438 * 4 3 2 7 7 S 1.80997 * 109.47195 * 180.02562 * 6 4 3 8 8 C 1.76201 * 100.00356 * 180.02562 * 7 6 4 9 9 H 1.08006 * 119.99845 * 359.97438 * 8 7 6 10 10 C 1.38799 * 120.00516 * 179.97438 * 8 7 6 11 11 N 1.31631 * 119.99684 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00135 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46862 * 90.00213 * 12 10 8 14 14 H 1.48497 * 109.47319 * 210.00226 * 12 10 8 15 15 H 1.48493 * 109.47272 * 330.00462 * 12 10 8 16 16 C 1.46497 * 120.00085 * 89.99585 * 3 2 1 17 17 H 1.08996 * 110.90514 * 357.58795 * 16 3 2 18 18 C 1.55142 * 110.98974 * 121.45870 * 16 3 2 19 19 C 1.54312 * 103.17714 * 153.83170 * 18 16 3 20 20 N 1.47443 * 107.23612 * 337.62814 * 19 18 16 21 21 C 1.46900 * 111.00227 * 236.74273 * 20 19 18 22 22 C 1.50701 * 109.47223 * 69.87126 * 21 20 19 23 23 C 1.31158 * 120.00108 * 125.00046 * 22 21 20 24 24 Cl 1.73606 * 119.99934 * 180.02562 * 23 22 21 25 25 C 1.47844 * 108.56494 * 359.01050 * 20 19 18 26 26 H 1.09009 * 109.46668 * 179.97438 * 1 2 3 27 27 H 1.08989 * 109.47205 * 300.00016 * 1 2 3 28 28 H 1.08997 * 109.46839 * 60.00627 * 1 2 3 29 29 H 1.09006 * 109.47162 * 239.99822 * 2 1 3 30 30 H 1.09001 * 109.46855 * 120.00131 * 2 1 3 31 31 H 1.08998 * 109.47117 * 299.99988 * 6 4 3 32 32 H 1.08999 * 109.47089 * 60.00142 * 6 4 3 33 33 H 0.96997 * 119.99905 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.70816 * 35.36018 * 18 16 3 35 35 H 1.09005 * 110.70106 * 272.30158 * 18 16 3 36 36 H 1.08997 * 109.89327 * 97.03090 * 19 18 16 37 37 H 1.09001 * 109.89155 * 218.05905 * 19 18 16 38 38 H 1.08999 * 109.47147 * 189.87070 * 21 20 19 39 39 H 1.08994 * 109.46907 * 309.87190 * 21 20 19 40 40 H 1.08004 * 119.99840 * 305.00428 * 22 21 20 41 41 H 1.07997 * 119.99983 * 359.97438 * 23 22 21 42 42 H 1.08999 * 110.37744 * 142.93014 * 25 20 19 43 43 H 1.09007 * 110.37325 * 265.15824 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.6469 3.1601 -1.1673 6 6 1.9924 1.3059 -2.4723 7 16 2.3851 2.4145 -3.8481 8 6 2.0115 1.3586 -5.2083 9 1 1.6564 0.3541 -5.0305 10 6 2.1736 1.8174 -6.5081 11 7 2.6059 3.0417 -6.7248 12 14 1.7783 0.6977 -7.9500 13 1 0.3533 0.8672 -8.3322 14 1 2.6453 1.0503 -9.1029 15 1 2.0218 -0.7146 -7.5613 16 6 2.2625 2.0718 1.2687 17 1 1.9931 1.4388 2.1142 18 6 3.7382 2.5391 1.3721 19 6 3.6586 3.7469 2.3292 20 7 2.2739 4.2513 2.2818 21 6 2.2430 5.6693 1.8994 22 6 2.6374 5.8080 0.4515 23 6 1.8426 6.4269 -0.3883 24 17 2.2967 6.5860 -2.0564 25 6 1.5054 3.4275 1.3244 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.6229 0.4186 -2.5298 32 1 0.9445 1.0113 -2.5302 33 1 2.7196 3.3623 -7.6331 34 1 4.1149 2.8450 0.3960 35 1 4.3628 1.7524 1.7954 36 1 3.9042 3.4330 3.3437 37 1 4.3502 4.5240 2.0040 38 1 1.2360 6.0619 2.0408 39 1 2.9417 6.2287 2.5215 40 1 3.5746 5.3975 0.1055 41 1 0.9053 6.8369 -0.0424 42 1 0.4872 3.2786 1.6838 43 1 1.4949 3.8986 0.3414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269307260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:25 Heat of formation + Delta-G solvation = -11.046389 kcal Electronic energy + Delta-G solvation = -25149.894767 eV Core-core repulsion = 21576.019437 eV Total energy + Delta-G solvation = -3573.875331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.37511 -38.29759 -36.18501 -35.65875 -33.73996 -32.41186 -31.09137 -29.81433 -29.32028 -27.78630 -25.49425 -25.00229 -23.29215 -21.80248 -21.25500 -19.70713 -18.82514 -17.56723 -16.75856 -16.56192 -15.82629 -15.41841 -14.96815 -14.79356 -14.58156 -13.96202 -13.88516 -13.82208 -13.56570 -13.51181 -13.21696 -12.92516 -12.51834 -12.36293 -11.95549 -11.87295 -11.70586 -11.57514 -11.50126 -11.36823 -11.28626 -11.07536 -11.00348 -10.96296 -10.76844 -10.69144 -10.30632 -9.78654 -9.12757 -9.04845 -8.74847 -8.47292 -8.34387 -8.17397 -6.45381 -6.20017 -3.89152 2.11292 2.79028 2.90865 3.07169 3.22354 3.25626 3.30117 3.59913 4.11073 4.22172 4.59704 4.64141 4.83742 4.95789 4.97685 5.10780 5.14956 5.18215 5.24361 5.25555 5.35244 5.40032 5.43423 5.58359 5.61837 5.66639 5.72719 5.78340 5.88217 5.93916 6.04028 6.07538 6.11129 6.20926 6.25772 6.39410 6.51541 6.74237 6.91104 7.00180 7.58769 7.61255 8.36417 8.61111 9.25555 10.87093 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.004348 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.959978 B = 6437.878052 C = 8193.410390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 N -0.614 5.614 4 C 0.532 3.468 5 O -0.498 6.498 6 C -0.152 4.152 7 S -0.052 6.052 8 C -0.536 4.536 9 H 0.070 0.930 10 C 0.075 3.925 11 N -0.867 5.867 12 Si 0.915 3.085 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.147 3.853 17 H 0.094 0.906 18 C -0.157 4.157 19 C 0.046 3.954 20 N -0.518 5.518 21 C 0.085 3.915 22 C -0.174 4.174 23 C -0.097 4.097 24 Cl -0.072 7.072 25 C 0.015 3.985 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.267 0.733 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.071 0.929 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 -0.756 19.678 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 N -0.349 5.349 4 C 0.320 3.680 5 O -0.372 6.372 6 C -0.303 4.303 7 S 0.175 5.825 8 C -0.685 4.685 9 H 0.088 0.912 10 C -0.134 4.134 11 N -0.502 5.502 12 Si 0.742 3.258 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.042 3.958 17 H 0.112 0.888 18 C -0.196 4.196 19 C -0.083 4.083 20 N -0.240 5.240 21 C -0.044 4.044 22 C -0.194 4.194 23 C -0.142 4.142 24 Cl -0.044 7.044 25 C -0.113 4.113 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.143 0.857 41 H 0.152 0.848 42 H 0.089 0.911 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.330 1.049 19.911 19.983 hybrid contribution -0.451 -2.149 -1.871 2.885 sum -1.781 -1.101 18.040 18.161 Atomic orbital electron populations 1.22230 0.96005 1.02118 1.02716 1.21541 0.94443 0.82460 1.03107 1.47928 1.67692 1.14110 1.05182 1.20291 0.76721 0.86674 0.84317 1.90658 1.43047 1.16821 1.86631 1.23606 1.04481 1.04537 0.97667 1.85400 1.86690 1.17461 0.92944 1.22879 1.51640 1.01502 0.92447 0.91150 1.24954 0.94707 0.95469 0.98287 1.70017 1.43037 1.15619 1.21554 0.86223 0.78418 0.80296 0.80907 1.20302 1.20789 1.19730 1.22068 0.94735 0.93367 0.85644 0.88781 1.23174 0.96843 0.97857 1.01702 1.22720 0.89800 0.96490 0.99253 1.63882 1.11309 1.01906 1.46939 1.21443 1.01970 0.90168 0.90821 1.23732 1.01020 0.98432 0.96241 1.24345 1.00366 1.03313 0.86201 1.98437 1.92315 1.96346 1.17285 1.23681 0.96820 0.93176 0.97667 0.91684 0.92491 0.91950 0.89972 0.90762 0.89724 0.89589 0.92273 0.89036 0.91302 0.90758 0.92316 0.90348 0.89759 0.85749 0.84849 0.91070 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.11 1.13 5.91 -4.04 -0.02 1.10 16 3 N -0.61 -8.12 2.57 -163.40 -0.42 -8.54 16 4 C 0.53 9.32 6.98 -10.99 -0.08 9.24 16 5 O -0.50 -9.75 11.38 5.56 0.06 -9.69 16 6 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 7 S -0.05 -1.37 20.57 -107.50 -2.21 -3.58 16 8 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 9 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 10 C 0.08 2.14 5.49 -17.43 -0.10 2.04 16 11 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 12 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 C 0.15 1.74 3.56 -65.54 -0.23 1.50 16 17 H 0.09 0.94 7.90 -51.93 -0.41 0.53 16 18 C -0.16 -1.87 6.30 -24.91 -0.16 -2.03 16 19 C 0.05 0.49 6.40 -2.84 -0.02 0.47 16 20 N -0.52 -5.91 5.41 -232.38 -1.26 -7.16 16 21 C 0.08 0.91 5.72 -4.98 -0.03 0.88 16 22 C -0.17 -2.30 6.27 -36.07 -0.23 -2.53 16 23 C -0.10 -1.36 10.22 28.97 0.30 -1.06 16 24 Cl -0.07 -1.28 29.10 -51.86 -1.51 -2.79 16 25 C 0.01 0.19 5.85 -2.04 -0.01 0.18 16 26 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 27 H 0.06 0.53 8.14 -51.94 -0.42 0.11 16 28 H 0.06 0.74 7.22 -51.93 -0.38 0.36 16 29 H 0.08 0.90 6.44 -51.93 -0.33 0.56 16 30 H 0.07 0.61 7.98 -51.93 -0.41 0.19 16 31 H 0.08 1.59 7.40 -51.92 -0.38 1.20 16 32 H 0.09 1.62 7.19 -51.92 -0.37 1.25 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.09 1.40 6.12 -51.93 -0.32 1.09 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.64 6.98 -51.93 -0.36 0.28 16 38 H 0.08 0.78 7.80 -51.93 -0.40 0.37 16 39 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 40 H 0.12 1.93 7.59 -52.48 -0.40 1.54 16 41 H 0.13 1.56 7.84 -52.49 -0.41 1.15 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 1.49 3.56 -51.93 -0.18 1.30 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -31.97 369.17 -10.24 -42.21 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.45 Total: 2.19 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 0.27 Total: -9.24 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -0.94 Total: -41.10 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.06 Total: -9.69 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.21 Total: -3.58 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.51 Total: -2.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.97 -10.24 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269307260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.168 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds