Wall clock time and date at job start Tue Mar 31 2020 16:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47292 * 2 1 4 4 C 1.34778 * 119.99891 * 269.99942 * 3 2 1 5 5 O 1.21281 * 120.00044 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99962 * 359.97438 * 4 3 2 7 7 S 1.80997 * 109.47195 * 180.02562 * 6 4 3 8 8 C 1.76201 * 100.00356 * 180.02562 * 7 6 4 9 9 H 1.08006 * 119.99845 * 359.97438 * 8 7 6 10 10 C 1.38799 * 120.00516 * 179.97438 * 8 7 6 11 11 N 1.31631 * 119.99684 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00135 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46862 * 90.00213 * 12 10 8 14 14 H 1.48497 * 109.47319 * 210.00226 * 12 10 8 15 15 H 1.48493 * 109.47272 * 330.00462 * 12 10 8 16 16 C 1.46497 * 120.00085 * 89.99585 * 3 2 1 17 17 H 1.08996 * 110.90514 * 357.58795 * 16 3 2 18 18 C 1.55142 * 110.98974 * 121.45870 * 16 3 2 19 19 C 1.54312 * 103.17714 * 153.83170 * 18 16 3 20 20 N 1.47443 * 107.23612 * 337.62814 * 19 18 16 21 21 C 1.46900 * 111.00227 * 236.74273 * 20 19 18 22 22 C 1.50701 * 109.47223 * 69.87126 * 21 20 19 23 23 C 1.31158 * 120.00108 * 125.00046 * 22 21 20 24 24 Cl 1.73606 * 119.99934 * 180.02562 * 23 22 21 25 25 C 1.47844 * 108.56494 * 359.01050 * 20 19 18 26 26 H 1.09009 * 109.46668 * 179.97438 * 1 2 3 27 27 H 1.08989 * 109.47205 * 300.00016 * 1 2 3 28 28 H 1.08997 * 109.46839 * 60.00627 * 1 2 3 29 29 H 1.09006 * 109.47162 * 239.99822 * 2 1 3 30 30 H 1.09001 * 109.46855 * 120.00131 * 2 1 3 31 31 H 1.08998 * 109.47117 * 299.99988 * 6 4 3 32 32 H 1.08999 * 109.47089 * 60.00142 * 6 4 3 33 33 H 0.96997 * 119.99905 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.70816 * 35.36018 * 18 16 3 35 35 H 1.09005 * 110.70106 * 272.30158 * 18 16 3 36 36 H 1.08997 * 109.89327 * 97.03090 * 19 18 16 37 37 H 1.09001 * 109.89155 * 218.05905 * 19 18 16 38 38 H 1.08999 * 109.47147 * 189.87070 * 21 20 19 39 39 H 1.08994 * 109.46907 * 309.87190 * 21 20 19 40 40 H 1.08004 * 119.99840 * 305.00428 * 22 21 20 41 41 H 1.07997 * 119.99983 * 359.97438 * 23 22 21 42 42 H 1.08999 * 110.37744 * 142.93014 * 25 20 19 43 43 H 1.09007 * 110.37325 * 265.15824 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.6469 3.1601 -1.1673 6 6 1.9924 1.3059 -2.4723 7 16 2.3851 2.4145 -3.8481 8 6 2.0115 1.3586 -5.2083 9 1 1.6564 0.3541 -5.0305 10 6 2.1736 1.8174 -6.5081 11 7 2.6059 3.0417 -6.7248 12 14 1.7783 0.6977 -7.9500 13 1 0.3533 0.8672 -8.3322 14 1 2.6453 1.0503 -9.1029 15 1 2.0218 -0.7146 -7.5613 16 6 2.2625 2.0718 1.2687 17 1 1.9931 1.4388 2.1142 18 6 3.7382 2.5391 1.3721 19 6 3.6586 3.7469 2.3292 20 7 2.2739 4.2513 2.2818 21 6 2.2430 5.6693 1.8994 22 6 2.6374 5.8080 0.4515 23 6 1.8426 6.4269 -0.3883 24 17 2.2967 6.5860 -2.0564 25 6 1.5054 3.4275 1.3244 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.6229 0.4186 -2.5298 32 1 0.9445 1.0113 -2.5302 33 1 2.7196 3.3623 -7.6331 34 1 4.1149 2.8450 0.3960 35 1 4.3628 1.7524 1.7954 36 1 3.9042 3.4330 3.3437 37 1 4.3502 4.5240 2.0040 38 1 1.2360 6.0619 2.0408 39 1 2.9417 6.2287 2.5215 40 1 3.5746 5.3975 0.1055 41 1 0.9053 6.8369 -0.0424 42 1 0.4872 3.2786 1.6838 43 1 1.4949 3.8986 0.3414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269307260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:24 Heat of formation + Delta-G solvation = -31.413362 kcal Electronic energy + Delta-G solvation = -25150.777946 eV Core-core repulsion = 21576.019437 eV Total energy + Delta-G solvation = -3574.758509 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49319 -39.39442 -37.43106 -36.81588 -34.77688 -34.57892 -32.10992 -31.03703 -30.39368 -28.91801 -27.63912 -26.00292 -24.26002 -22.82962 -22.23347 -20.72514 -20.32583 -19.26350 -17.91323 -17.72263 -16.96838 -16.87788 -16.50958 -16.22735 -15.98305 -15.28664 -14.90607 -14.87694 -14.74112 -14.60033 -14.38258 -14.33990 -14.00865 -13.44922 -13.16214 -13.11231 -12.98494 -12.91525 -12.71424 -12.60738 -12.57760 -12.46611 -12.28691 -12.24379 -11.90840 -11.71399 -11.63613 -11.61484 -11.13948 -10.44819 -10.19070 -9.90622 -9.57021 -9.31840 -8.59905 -8.34089 -6.09048 1.01458 1.27538 1.39440 1.45948 1.56214 1.61924 1.71000 2.12683 2.28968 2.99785 3.15458 3.31501 3.63623 3.70605 3.87535 3.95008 4.06202 4.18599 4.23783 4.26349 4.33757 4.43362 4.46592 4.49482 4.52437 4.61838 4.74525 4.80050 4.87836 4.94720 5.00865 5.08198 5.12603 5.26602 5.30976 5.37521 5.41179 5.44808 5.74387 5.98246 6.03896 6.19225 6.40965 7.07570 7.30438 8.74392 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.004348 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.959978 B = 6437.878052 C = 8193.410390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.101 3.899 3 N -0.601 5.601 4 C 0.528 3.472 5 O -0.523 6.523 6 C -0.127 4.127 7 S -0.130 6.130 8 C -0.549 4.549 9 H 0.077 0.923 10 C 0.017 3.983 11 N -0.910 5.910 12 Si 0.992 3.008 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.259 1.259 16 C 0.148 3.852 17 H 0.128 0.872 18 C -0.154 4.154 19 C 0.047 3.953 20 N -0.510 5.510 21 C 0.088 3.912 22 C -0.156 4.156 23 C -0.108 4.108 24 Cl -0.115 7.115 25 C 0.014 3.986 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.269 0.731 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.160 0.840 42 H 0.079 0.921 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 -2.964 22.227 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 N -0.335 5.335 4 C 0.315 3.685 5 O -0.399 6.399 6 C -0.279 4.279 7 S 0.098 5.902 8 C -0.697 4.697 9 H 0.095 0.905 10 C -0.188 4.188 11 N -0.547 5.547 12 Si 0.814 3.186 13 H -0.194 1.194 14 H -0.203 1.203 15 H -0.182 1.182 16 C 0.044 3.956 17 H 0.146 0.854 18 C -0.193 4.193 19 C -0.081 4.081 20 N -0.232 5.232 21 C -0.041 4.041 22 C -0.177 4.177 23 C -0.153 4.153 24 Cl -0.086 7.086 25 C -0.114 4.114 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.177 0.823 42 H 0.097 0.903 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.237 -1.189 22.503 22.646 hybrid contribution -0.159 -1.509 -2.481 2.909 sum -2.396 -2.698 20.022 20.345 Atomic orbital electron populations 1.22180 0.95310 1.03248 1.01774 1.21830 0.94958 0.80760 1.04584 1.47874 1.66290 1.15036 1.04287 1.19938 0.77316 0.86389 0.84847 1.90672 1.44352 1.17832 1.87002 1.23426 1.04979 1.03141 0.96313 1.85525 1.87337 1.21037 0.96345 1.23224 1.51474 1.01768 0.93214 0.90512 1.26029 0.94257 0.97015 1.01489 1.70183 1.44408 1.17814 1.22268 0.85052 0.78405 0.78470 0.76697 1.19388 1.20334 1.18247 1.22293 0.94445 0.93468 0.85431 0.85401 1.23105 0.97143 0.98977 1.00101 1.22792 0.89325 0.95822 1.00130 1.63977 1.11491 1.01892 1.45889 1.21571 1.03348 0.90329 0.88842 1.23768 0.99458 0.96766 0.97741 1.24635 1.01750 1.04936 0.84028 1.98426 1.92715 1.96640 1.20857 1.23613 0.97677 0.93738 0.96392 0.89537 0.91654 0.94619 0.90606 0.87229 0.88695 0.88763 0.92171 0.92978 0.89378 0.88270 0.92935 0.88881 0.87685 0.88485 0.82290 0.90262 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 10.24 71.98 0.74 -2.08 16 2 C 0.10 1.80 5.91 86.38 0.51 2.31 16 3 N -0.60 -14.85 2.57 -789.26 -2.03 -16.88 16 4 C 0.53 18.63 6.98 87.66 0.61 19.24 16 5 O -0.52 -21.24 11.38 -3.03 -0.03 -21.27 16 6 C -0.13 -5.10 4.71 71.24 0.34 -4.77 16 7 S -0.13 -7.15 20.57 -56.49 -1.16 -8.31 16 8 C -0.55 -31.67 9.50 67.95 0.65 -31.03 16 9 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 10 C 0.02 0.98 5.49 84.86 0.47 1.44 16 11 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 12 Si 0.99 44.26 29.55 68.60 2.03 46.29 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 16 C 0.15 3.10 3.56 46.54 0.17 3.26 16 17 H 0.13 1.92 7.90 -2.39 -0.02 1.90 16 18 C -0.15 -3.42 6.30 31.77 0.20 -3.22 16 19 C 0.05 0.90 6.40 86.64 0.55 1.46 16 20 N -0.51 -10.35 5.41 -889.11 -4.81 -15.16 16 21 C 0.09 1.71 5.72 85.56 0.49 2.20 16 22 C -0.16 -4.17 6.27 25.49 0.16 -4.01 16 23 C -0.11 -3.12 10.22 67.62 0.69 -2.42 16 24 Cl -0.11 -4.33 29.10 -2.72 -0.08 -4.41 16 25 C 0.01 0.34 5.85 86.94 0.51 0.85 16 26 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.03 0.79 7.22 -2.39 -0.02 0.78 16 29 H 0.08 1.48 6.44 -2.38 -0.02 1.46 16 30 H 0.11 1.26 7.98 -2.39 -0.02 1.25 16 31 H 0.09 3.56 7.40 -2.40 -0.02 3.55 16 32 H 0.09 3.58 7.19 -2.40 -0.02 3.57 16 33 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.05 1.61 6.12 -2.39 -0.01 1.60 16 35 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.08 6.98 -2.39 -0.02 1.06 16 38 H 0.09 1.59 7.80 -2.39 -0.02 1.57 16 39 H 0.11 1.66 8.04 -2.39 -0.02 1.64 16 40 H 0.10 3.18 7.59 -2.91 -0.02 3.16 16 41 H 0.16 3.65 7.84 -2.91 -0.02 3.63 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.98 3.56 -2.38 -0.01 1.97 16 Total: -1.00 -73.54 369.17 1.28 -72.26 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 1.00 Total: 20.56 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 6.08 Total: -16.78 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -6.55 Total: -88.34 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.03 Total: -21.27 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -7.15 SS G_CDS: -1.16 Total: -8.31 kcal Atomic # 17 Polarization: -4.33 SS G_CDS: -0.08 Total: -4.41 kcal Total: -73.54 1.28 -72.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269307260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.846 kcal (2) G-P(sol) polarization free energy of solvation -73.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds