Wall clock time and date at job start Tue Mar 31 2020 16:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99553 * 2 1 4 4 C 1.50693 * 109.47496 * 293.95315 * 3 2 1 5 5 C 1.31157 * 119.99940 * 124.99964 * 4 3 2 6 6 Cl 1.73601 * 119.99879 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99902 * 123.95097 * 2 1 3 8 8 C 1.53070 * 109.44608 * 305.84483 * 7 2 1 9 9 C 1.53195 * 109.29524 * 181.23659 * 8 7 2 10 10 N 1.46919 * 108.89273 * 305.57804 * 9 8 7 11 11 C 1.34783 * 120.63144 * 233.55709 * 10 9 8 12 12 O 1.21274 * 119.99655 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99922 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.46922 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99932 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99685 * 179.97438 * 15 14 13 18 18 N 1.31632 * 120.00277 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47016 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46898 * 120.00268 * 19 17 15 22 22 H 1.48500 * 109.47178 * 240.00180 * 19 17 15 23 23 C 1.46928 * 118.73982 * 53.53793 * 10 9 8 24 24 C 1.53039 * 109.45920 * 66.05103 * 7 2 1 25 25 H 1.08999 * 109.46777 * 296.04152 * 1 2 3 26 26 H 1.08995 * 109.47466 * 56.04429 * 1 2 3 27 27 H 1.09002 * 109.46815 * 176.04898 * 1 2 3 28 28 H 1.09002 * 109.47037 * 53.96060 * 3 2 1 29 29 H 1.09005 * 109.46855 * 173.94966 * 3 2 1 30 30 H 1.08000 * 120.00121 * 305.00809 * 4 3 2 31 31 H 1.07997 * 120.00112 * 0.02562 * 5 4 3 32 32 H 1.09007 * 109.45634 * 186.01642 * 7 2 1 33 33 H 1.08997 * 109.38860 * 61.35846 * 8 7 2 34 34 H 1.09003 * 109.62046 * 301.25189 * 8 7 2 35 35 H 1.09002 * 109.58720 * 185.71834 * 9 8 7 36 36 H 1.08996 * 109.58651 * 65.43731 * 9 8 7 37 37 H 1.09001 * 109.47385 * 300.00399 * 13 11 10 38 38 H 1.08997 * 109.47457 * 60.00250 * 13 11 10 39 39 H 0.96997 * 119.99912 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.58787 * 66.18123 * 23 10 9 41 41 H 1.09007 * 109.58600 * 186.46436 * 23 10 9 42 42 H 1.09002 * 109.49876 * 58.67240 * 24 7 2 43 43 H 1.09001 * 109.49731 * 298.57496 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 0.9894 3.1877 -1.2871 6 17 0.5759 3.9658 -2.7829 7 6 1.9955 -0.7659 1.1376 8 6 1.3890 -0.2302 2.4370 9 6 1.9636 -1.0108 3.6233 10 7 1.7451 -2.4462 3.3991 11 6 1.1283 -3.2007 4.3302 12 8 0.7475 -2.6955 5.3649 13 6 0.9110 -4.6716 4.0851 14 16 0.0638 -5.4017 5.5082 15 6 -0.0570 -7.0743 4.9674 16 1 0.3389 -7.3603 4.0042 17 6 -0.6609 -8.0243 5.7795 18 7 -1.1439 -7.6756 6.9533 19 14 -0.7896 -9.7974 5.2058 20 1 -0.1754 -9.9281 3.8602 21 1 -0.0759 -10.6803 6.1631 22 1 -2.2192 -10.1934 5.1386 23 6 2.2112 -3.0436 2.1402 24 6 1.6313 -2.2429 0.9701 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 1.5611 1.9273 0.8310 29 1 3.0797 1.3445 0.1083 30 1 1.9130 1.5922 -2.2381 31 1 0.7136 3.6429 -0.3474 32 1 3.0798 -0.6613 1.1751 33 1 0.3065 -0.3549 2.4094 34 1 1.6313 0.8270 2.5454 35 1 1.4613 -0.7036 4.5406 36 1 3.0321 -0.8127 3.7080 37 1 0.3009 -4.8049 3.1918 38 1 1.8739 -5.1626 3.9439 39 1 -1.5662 -8.3394 7.5205 40 1 3.3000 -3.0110 2.1014 41 1 1.8743 -4.0786 2.0801 42 1 2.0457 -2.6158 0.0334 43 1 0.5468 -2.3510 0.9573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283292974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:02 Heat of formation + Delta-G solvation = -18.357085 kcal Electronic energy + Delta-G solvation = -23670.394066 eV Core-core repulsion = 20096.201720 eV Total energy + Delta-G solvation = -3574.192346 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.33626 -38.73889 -37.15838 -36.17796 -33.79507 -32.44200 -31.75413 -31.06926 -28.85677 -27.72970 -25.71323 -25.44060 -23.41734 -23.02014 -20.64837 -20.26352 -18.95919 -17.72024 -16.89698 -16.61540 -16.06959 -15.77821 -15.38044 -15.18250 -14.81881 -14.72768 -14.26006 -14.14481 -13.85255 -13.77533 -13.07681 -12.94771 -12.94120 -12.66082 -12.46752 -12.30553 -12.15502 -12.10570 -11.88018 -11.56006 -11.32946 -11.23115 -11.08241 -11.05451 -10.98134 -10.76043 -10.72298 -9.80673 -9.55488 -9.38278 -9.08748 -8.70697 -8.54479 -8.23562 -6.51682 -6.23065 -3.93726 1.39153 1.87210 2.91109 3.02302 3.20566 3.25201 3.30187 3.54801 3.58302 4.18762 4.36953 4.42514 4.49446 4.57538 4.77250 4.85354 4.94794 4.96321 4.99171 5.08097 5.12207 5.16169 5.24877 5.28553 5.38234 5.46992 5.55159 5.62839 5.67453 5.69097 5.71832 5.80524 5.82878 5.86317 5.92083 6.04000 6.09845 6.59992 6.63385 6.65801 7.52973 7.58747 8.34075 8.53757 9.22413 10.84398 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.001955 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.114796 B =14317.804743 C =14741.681666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.531 5.531 3 C 0.084 3.916 4 C -0.126 4.126 5 C -0.111 4.111 6 Cl -0.095 7.095 7 C 0.086 3.914 8 C -0.168 4.168 9 C 0.118 3.882 10 N -0.621 5.621 11 C 0.535 3.465 12 O -0.518 6.518 13 C -0.150 4.150 14 S -0.062 6.062 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.109 3.891 24 C -0.125 4.125 25 H 0.033 0.967 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.980 20.027 -18.142 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.253 5.253 3 C -0.044 4.044 4 C -0.146 4.146 5 C -0.156 4.156 6 Cl -0.067 7.067 7 C -0.022 4.022 8 C -0.208 4.208 9 C -0.005 4.005 10 N -0.357 5.357 11 C 0.323 3.677 12 O -0.392 6.392 13 C -0.301 4.301 14 S 0.164 5.836 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.015 4.015 24 C -0.164 4.164 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.440 20.550 -16.996 27.687 hybrid contribution 0.040 -1.213 -1.003 1.574 sum 7.480 19.337 -17.999 27.456 Atomic orbital electron populations 1.22517 0.87153 1.02909 1.00734 1.62227 1.08435 1.12137 1.42491 1.21128 1.00896 0.88931 0.93422 1.23130 0.96617 0.94352 1.00466 1.24428 1.03407 0.97331 0.90433 1.98377 1.92411 1.81350 1.34554 1.21763 0.99458 0.93660 0.87310 1.22632 1.02185 0.99778 0.96161 1.21382 1.00240 0.80179 0.98728 1.48124 1.60352 1.08736 1.18526 1.20345 0.76144 0.88418 0.82748 1.90686 1.48941 1.73665 1.25923 1.23551 1.05220 0.94093 1.07225 1.85413 1.73689 1.06091 1.18367 1.22898 1.44901 0.93766 1.06692 0.90870 1.24997 0.94637 0.99409 0.94570 1.70028 1.36333 1.34641 1.09260 0.86118 0.78011 0.82634 0.78741 1.19591 1.20565 1.20567 1.21720 0.99005 0.98167 0.82590 1.21972 1.02159 0.93628 0.98644 0.94807 0.91423 0.90741 0.93729 0.89074 0.85442 0.83914 0.89670 0.90793 0.91065 0.88908 0.91891 0.89271 0.89242 0.92235 0.91378 0.88879 0.89752 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.61 60.07 0.52 0.63 16 2 N -0.53 -3.89 4.70 -236.26 -1.11 -5.00 16 3 C 0.08 0.50 4.97 -4.98 -0.02 0.47 16 4 C -0.13 -0.76 8.29 -36.07 -0.30 -1.05 16 5 C -0.11 -0.66 10.43 28.97 0.30 -0.36 16 6 Cl -0.10 -0.69 29.10 -51.86 -1.51 -2.19 16 7 C 0.09 0.67 2.15 -67.66 -0.15 0.52 16 8 C -0.17 -1.48 4.60 -26.59 -0.12 -1.60 16 9 C 0.12 1.34 6.43 -3.71 -0.02 1.32 16 10 N -0.62 -8.42 2.97 -172.77 -0.51 -8.94 16 11 C 0.54 10.02 7.72 -10.98 -0.08 9.93 16 12 O -0.52 -11.74 15.27 5.56 0.08 -11.65 16 13 C -0.15 -3.01 4.50 36.00 0.16 -2.85 16 14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 15 C -0.53 -15.11 9.50 30.94 0.29 -14.81 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 19 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 24 C -0.13 -1.08 5.25 -26.61 -0.14 -1.22 16 25 H 0.03 0.27 6.24 -51.93 -0.32 -0.05 16 26 H 0.07 0.50 7.17 -51.93 -0.37 0.13 16 27 H 0.07 0.61 6.50 -51.93 -0.34 0.28 16 28 H 0.04 0.25 6.68 -51.93 -0.35 -0.09 16 29 H 0.09 0.48 7.93 -51.93 -0.41 0.07 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.14 0.68 7.84 -52.49 -0.41 0.27 16 32 H 0.09 0.61 7.93 -51.93 -0.41 0.20 16 33 H 0.07 0.77 6.40 -51.93 -0.33 0.44 16 34 H 0.07 0.53 6.86 -51.93 -0.36 0.17 16 35 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.65 7.69 -51.91 -0.40 1.25 16 38 H 0.09 1.66 7.94 -51.92 -0.41 1.24 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.99 5.93 -51.92 -0.31 0.69 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.69 6.62 -51.93 -0.34 0.35 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -33.27 368.34 -10.05 -43.32 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.37 Total: -2.18 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 0.32 Total: -5.94 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.89 Total: -39.26 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.51 Total: -2.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.27 -10.05 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283292974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.968 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds