Wall clock time and date at job start Tue Mar 31 2020 16:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99553 * 2 1 4 4 C 1.50693 * 109.47496 * 293.95315 * 3 2 1 5 5 C 1.31157 * 119.99940 * 124.99964 * 4 3 2 6 6 Cl 1.73601 * 119.99879 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99902 * 123.95097 * 2 1 3 8 8 C 1.53070 * 109.44608 * 305.84483 * 7 2 1 9 9 C 1.53195 * 109.29524 * 181.23659 * 8 7 2 10 10 N 1.46919 * 108.89273 * 305.57804 * 9 8 7 11 11 C 1.34783 * 120.63144 * 233.55709 * 10 9 8 12 12 O 1.21274 * 119.99655 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99922 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.46922 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99932 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99685 * 179.97438 * 15 14 13 18 18 N 1.31632 * 120.00277 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47016 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46898 * 120.00268 * 19 17 15 22 22 H 1.48500 * 109.47178 * 240.00180 * 19 17 15 23 23 C 1.46928 * 118.73982 * 53.53793 * 10 9 8 24 24 C 1.53039 * 109.45920 * 66.05103 * 7 2 1 25 25 H 1.08999 * 109.46777 * 296.04152 * 1 2 3 26 26 H 1.08995 * 109.47466 * 56.04429 * 1 2 3 27 27 H 1.09002 * 109.46815 * 176.04898 * 1 2 3 28 28 H 1.09002 * 109.47037 * 53.96060 * 3 2 1 29 29 H 1.09005 * 109.46855 * 173.94966 * 3 2 1 30 30 H 1.08000 * 120.00121 * 305.00809 * 4 3 2 31 31 H 1.07997 * 120.00112 * 0.02562 * 5 4 3 32 32 H 1.09007 * 109.45634 * 186.01642 * 7 2 1 33 33 H 1.08997 * 109.38860 * 61.35846 * 8 7 2 34 34 H 1.09003 * 109.62046 * 301.25189 * 8 7 2 35 35 H 1.09002 * 109.58720 * 185.71834 * 9 8 7 36 36 H 1.08996 * 109.58651 * 65.43731 * 9 8 7 37 37 H 1.09001 * 109.47385 * 300.00399 * 13 11 10 38 38 H 1.08997 * 109.47457 * 60.00250 * 13 11 10 39 39 H 0.96997 * 119.99912 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.58787 * 66.18123 * 23 10 9 41 41 H 1.09007 * 109.58600 * 186.46436 * 23 10 9 42 42 H 1.09002 * 109.49876 * 58.67240 * 24 7 2 43 43 H 1.09001 * 109.49731 * 298.57496 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 0.9894 3.1877 -1.2871 6 17 0.5759 3.9658 -2.7829 7 6 1.9955 -0.7659 1.1376 8 6 1.3890 -0.2302 2.4370 9 6 1.9636 -1.0108 3.6233 10 7 1.7451 -2.4462 3.3991 11 6 1.1283 -3.2007 4.3302 12 8 0.7475 -2.6955 5.3649 13 6 0.9110 -4.6716 4.0851 14 16 0.0638 -5.4017 5.5082 15 6 -0.0570 -7.0743 4.9674 16 1 0.3389 -7.3603 4.0042 17 6 -0.6609 -8.0243 5.7795 18 7 -1.1439 -7.6756 6.9533 19 14 -0.7896 -9.7974 5.2058 20 1 -0.1754 -9.9281 3.8602 21 1 -0.0759 -10.6803 6.1631 22 1 -2.2192 -10.1934 5.1386 23 6 2.2112 -3.0436 2.1402 24 6 1.6313 -2.2429 0.9701 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 1.5611 1.9273 0.8310 29 1 3.0797 1.3445 0.1083 30 1 1.9130 1.5922 -2.2381 31 1 0.7136 3.6429 -0.3474 32 1 3.0798 -0.6613 1.1751 33 1 0.3065 -0.3549 2.4094 34 1 1.6313 0.8270 2.5454 35 1 1.4613 -0.7036 4.5406 36 1 3.0321 -0.8127 3.7080 37 1 0.3009 -4.8049 3.1918 38 1 1.8739 -5.1626 3.9439 39 1 -1.5662 -8.3394 7.5205 40 1 3.3000 -3.0110 2.1014 41 1 1.8743 -4.0786 2.0801 42 1 2.0457 -2.6158 0.0334 43 1 0.5468 -2.3510 0.9573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283292974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:02 Heat of formation + Delta-G solvation = -39.860977 kcal Electronic energy + Delta-G solvation = -23671.326545 eV Core-core repulsion = 20096.201720 eV Total energy + Delta-G solvation = -3575.124825 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35089 -39.73568 -37.75643 -37.08810 -34.59159 -34.48653 -32.73098 -31.89812 -30.22689 -28.28331 -27.68441 -26.40338 -24.28760 -23.81647 -21.45234 -20.88534 -20.16755 -19.44067 -18.20597 -17.16895 -17.00840 -16.87918 -16.78084 -16.59761 -15.91726 -15.80193 -15.34832 -15.01831 -14.91057 -14.63519 -14.49278 -14.21075 -13.80689 -13.57786 -13.40442 -13.20353 -13.15418 -13.05020 -12.91702 -12.72575 -12.66340 -12.57461 -12.25870 -12.06358 -11.78008 -11.73315 -11.68433 -11.45221 -11.16159 -10.85813 -10.26046 -10.03320 -9.71235 -9.26153 -8.67777 -8.35005 -6.13359 0.93321 1.25835 1.39820 1.41449 1.46174 1.56694 1.57779 2.11165 2.27110 2.96199 2.99298 3.25503 3.63356 3.75348 3.83727 3.98249 4.06258 4.07531 4.19025 4.25164 4.26452 4.40035 4.43992 4.45745 4.47822 4.62139 4.68245 4.73180 4.80071 4.83775 4.86901 5.01221 5.06090 5.16994 5.23436 5.32864 5.38290 5.41957 5.58971 6.03539 6.09331 6.19815 6.28943 7.06389 7.14258 8.74476 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.001955 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.114796 B =14317.804743 C =14741.681666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.531 5.531 3 C 0.085 3.915 4 C -0.124 4.124 5 C -0.112 4.112 6 Cl -0.109 7.109 7 C 0.092 3.908 8 C -0.157 4.157 9 C 0.115 3.885 10 N -0.607 5.607 11 C 0.532 3.468 12 O -0.569 6.569 13 C -0.123 4.123 14 S -0.154 6.154 15 C -0.544 4.544 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.255 1.255 21 H -0.274 1.274 22 H -0.274 1.274 23 C 0.102 3.898 24 C -0.119 4.119 25 H 0.028 0.972 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.156 0.844 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.271 0.729 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.687 20.003 -20.635 30.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.254 5.254 3 C -0.043 4.043 4 C -0.144 4.144 5 C -0.157 4.157 6 Cl -0.081 7.081 7 C -0.016 4.016 8 C -0.197 4.197 9 C -0.008 4.008 10 N -0.341 5.341 11 C 0.320 3.680 12 O -0.448 6.448 13 C -0.274 4.274 14 S 0.073 5.927 15 C -0.692 4.692 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.179 1.179 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.020 4.020 24 C -0.158 4.158 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.174 0.826 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.179 20.558 -19.552 29.819 hybrid contribution -0.423 -1.076 -0.311 1.197 sum 8.755 19.482 -19.863 29.167 Atomic orbital electron populations 1.22464 0.87627 1.02382 1.00577 1.62219 1.08009 1.13128 1.42005 1.21182 1.01679 0.88019 0.93383 1.23099 0.96533 0.94296 1.00442 1.24596 1.03401 0.97440 0.90256 1.98377 1.92525 1.81620 1.35561 1.21737 1.00340 0.92982 0.86589 1.22556 1.00898 1.00564 0.95650 1.21579 1.01679 0.78775 0.98791 1.48139 1.58132 1.09457 1.18354 1.20131 0.76671 0.88108 0.83097 1.90669 1.51600 1.74281 1.28268 1.23366 1.05213 0.94957 1.03872 1.85601 1.75625 1.07651 1.23847 1.23225 1.44979 0.93845 1.07122 0.89840 1.26140 0.93925 1.04643 0.94505 1.70193 1.37371 1.36450 1.10799 0.84901 0.78226 0.75944 0.78854 1.17881 1.19938 1.19992 1.22032 1.00705 0.98032 0.81255 1.21914 1.01199 0.94178 0.98474 0.95304 0.91184 0.91567 0.93167 0.87693 0.85884 0.82636 0.87790 0.92703 0.89048 0.91694 0.89241 0.87627 0.87354 0.92013 0.88552 0.89324 0.88017 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.61 127.69 1.10 1.34 16 2 N -0.53 -6.27 4.70 -901.39 -4.24 -10.51 16 3 C 0.08 0.74 4.97 85.55 0.43 1.16 16 4 C -0.12 -1.20 8.29 25.49 0.21 -0.99 16 5 C -0.11 -1.13 10.43 67.62 0.71 -0.42 16 6 Cl -0.11 -1.45 29.10 -2.72 -0.08 -1.53 16 7 C 0.09 1.12 2.15 44.95 0.10 1.22 16 8 C -0.16 -2.42 4.60 30.68 0.14 -2.27 16 9 C 0.11 2.42 6.43 86.36 0.56 2.97 16 10 N -0.61 -15.60 2.97 -818.91 -2.44 -18.03 16 11 C 0.53 20.01 7.72 87.66 0.68 20.69 16 12 O -0.57 -26.82 15.27 -3.01 -0.05 -26.87 16 13 C -0.12 -4.91 4.50 71.24 0.32 -4.59 16 14 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 15 C -0.54 -30.99 9.50 67.95 0.65 -30.34 16 16 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 17 C 0.01 0.71 5.49 84.86 0.47 1.18 16 18 N -0.91 -56.05 13.22 21.65 0.29 -55.77 16 19 Si 1.00 43.43 29.55 68.60 2.03 45.45 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 C 0.10 1.79 6.34 86.36 0.55 2.33 16 24 C -0.12 -1.70 5.25 30.67 0.16 -1.54 16 25 H 0.03 0.42 6.24 -2.39 -0.01 0.41 16 26 H 0.07 0.92 7.17 -2.39 -0.02 0.91 16 27 H 0.07 1.02 6.50 -2.39 -0.02 1.00 16 28 H 0.05 0.41 6.68 -2.39 -0.02 0.39 16 29 H 0.11 0.68 7.93 -2.38 -0.02 0.66 16 30 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.16 1.13 7.84 -2.91 -0.02 1.11 16 32 H 0.10 0.97 7.93 -2.38 -0.02 0.96 16 33 H 0.05 1.08 6.40 -2.39 -0.02 1.07 16 34 H 0.09 1.07 6.86 -2.39 -0.02 1.06 16 35 H 0.06 1.78 7.00 -2.39 -0.02 1.76 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 3.84 7.69 -2.39 -0.02 3.82 16 38 H 0.11 3.89 7.94 -2.40 -0.02 3.87 16 39 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.66 5.93 -2.38 -0.01 1.65 16 42 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 0.99 6.62 -2.39 -0.02 0.97 16 Total: -1.00 -75.29 368.34 1.41 -73.88 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.01 Total: 12.44 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 6.05 Total: -9.27 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -6.39 Total: -84.31 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -75.29 1.41 -73.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283292974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.016 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds