Wall clock time and date at job start Tue Mar 31 2020 16:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00215 * 2 1 4 4 C 1.50699 * 109.47051 * 66.04558 * 3 2 1 5 5 C 1.31164 * 120.00214 * 124.99786 * 4 3 2 6 6 Cl 1.73603 * 119.99702 * 0.02562 * 5 4 3 7 7 C 1.46899 * 111.00048 * 236.04329 * 2 1 3 8 8 C 1.53004 * 109.47297 * 293.11765 * 7 2 1 9 9 H 1.09005 * 109.86863 * 52.31977 * 8 7 2 10 10 C 1.54320 * 109.88203 * 291.30250 * 8 7 2 11 11 C 1.55400 * 102.82874 * 218.48065 * 10 8 7 12 12 C 1.54910 * 101.66483 * 35.34030 * 11 10 8 13 13 N 1.47022 * 109.88054 * 173.33425 * 8 7 2 14 14 C 1.34771 * 125.65025 * 298.32379 * 13 8 7 15 15 O 1.21280 * 120.00268 * 354.94259 * 14 13 8 16 16 C 1.50706 * 119.99919 * 174.94703 * 14 13 8 17 17 S 1.81002 * 109.46825 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99598 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00586 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99966 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00039 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00270 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47103 * 89.99931 * 22 20 18 24 24 H 1.48498 * 109.47198 * 209.99854 * 22 20 18 25 25 H 1.48498 * 109.46827 * 330.00015 * 22 20 18 26 26 H 1.09003 * 109.47193 * 56.45847 * 1 2 3 27 27 H 1.08998 * 109.47489 * 176.45896 * 1 2 3 28 28 H 1.09000 * 109.47346 * 296.45970 * 1 2 3 29 29 H 1.08996 * 109.47001 * 306.04600 * 3 2 1 30 30 H 1.08997 * 109.47132 * 186.04540 * 3 2 1 31 31 H 1.08000 * 120.00039 * 305.00252 * 4 3 2 32 32 H 1.08001 * 120.00147 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.46902 * 53.11742 * 7 2 1 34 34 H 1.08999 * 109.47354 * 173.11880 * 7 2 1 35 35 H 1.08995 * 110.72059 * 336.75867 * 10 8 7 36 36 H 1.09006 * 110.71801 * 100.02584 * 10 8 7 37 37 H 1.09001 * 110.88993 * 277.26461 * 11 10 8 38 38 H 1.09001 * 111.06853 * 153.49155 * 11 10 8 39 39 H 1.08998 * 110.36519 * 204.23444 * 12 11 10 40 40 H 1.08997 * 110.46074 * 81.95809 * 12 11 10 41 41 H 1.08999 * 109.46631 * 299.99209 * 16 14 13 42 42 H 1.08996 * 109.47566 * 59.99559 * 16 14 13 43 43 H 0.97000 * 119.99589 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 2.5772 2.5782 2.0429 6 17 4.2347 2.5034 1.5320 7 6 1.9954 -0.7660 -1.1375 8 6 1.6495 -2.2458 -0.9598 9 1 0.5808 -2.3570 -0.7761 10 6 2.4492 -2.8335 0.2220 11 6 2.8187 -4.2554 -0.2846 12 6 3.0449 -4.0005 -1.7958 13 7 2.0304 -2.9966 -2.1651 14 6 1.5339 -2.8001 -3.4026 15 8 0.6335 -2.0063 -3.5757 16 6 2.0977 -3.5668 -4.5711 17 16 1.2284 -3.0857 -6.0841 18 6 2.0651 -4.1032 -7.2543 19 1 2.8562 -4.7624 -6.9287 20 6 1.7074 -4.0576 -8.5946 21 7 0.7435 -3.2539 -8.9917 22 14 2.5939 -5.1369 -9.8352 23 1 1.8916 -6.4404 -9.9484 24 1 2.6044 -4.4637 -11.1587 25 1 3.9904 -5.3645 -9.3845 26 1 -0.3634 0.5678 -0.8566 27 1 -0.3634 -1.0257 -0.0635 28 1 -0.3634 0.4579 0.9200 29 1 1.5612 1.9273 -0.8309 30 1 3.0797 1.3443 -0.1082 31 1 0.6058 2.0940 1.6161 32 1 2.3203 3.0621 2.9736 33 1 1.5498 -0.3971 -2.0613 34 1 3.0781 -0.6492 -1.1844 35 1 3.3477 -2.2458 0.4098 36 1 1.8295 -2.8893 1.1171 37 1 1.9951 -4.9512 -0.1246 38 1 3.7304 -4.6163 0.1915 39 1 2.8932 -4.9193 -2.3622 40 1 4.0470 -3.6091 -1.9704 41 1 3.1593 -3.3424 -4.6747 42 1 1.9670 -4.6355 -4.4016 43 1 0.4934 -3.2223 -9.9283 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328708267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:08 Heat of formation + Delta-G solvation = -14.620102 kcal Electronic energy + Delta-G solvation = -23887.995201 eV Core-core repulsion = 20313.964903 eV Total energy + Delta-G solvation = -3574.030298 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09897 -38.12736 -37.13746 -36.57437 -33.49890 -32.43375 -31.72408 -30.33377 -28.57291 -27.46769 -25.99947 -25.49413 -23.34219 -22.05213 -20.82875 -20.06929 -18.90552 -17.67886 -17.02439 -16.50632 -16.31458 -15.52425 -15.22506 -14.95921 -14.80723 -14.54971 -14.19358 -13.78880 -13.74400 -13.49959 -13.16173 -12.86581 -12.75882 -12.53796 -12.38462 -12.20524 -12.08766 -11.88021 -11.61698 -11.45976 -11.28897 -11.06810 -11.02276 -10.88298 -10.76842 -10.74729 -10.69957 -9.81752 -9.51512 -9.35341 -9.07003 -8.60245 -8.35655 -8.23773 -6.50654 -6.22135 -3.92680 1.54899 2.05522 2.88469 3.05970 3.21929 3.25269 3.29868 3.57170 3.95465 4.19883 4.42573 4.47329 4.50997 4.74453 4.86555 4.97812 5.11381 5.13112 5.15891 5.19348 5.22966 5.28795 5.43643 5.48467 5.55603 5.63434 5.66367 5.70740 5.76845 5.82910 5.85558 5.88411 5.88850 5.98189 5.99691 6.14786 6.18432 6.47696 6.82257 6.87362 7.59178 7.71184 8.34875 8.57035 9.23208 10.85317 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.002420 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.967996 B =11567.954867 C =12055.493687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.530 5.530 3 C 0.067 3.933 4 C -0.126 4.126 5 C -0.107 4.107 6 Cl -0.094 7.094 7 C 0.043 3.957 8 C 0.143 3.857 9 H 0.075 0.925 10 C -0.111 4.111 11 C -0.136 4.136 12 C 0.101 3.899 13 N -0.623 5.623 14 C 0.549 3.451 15 O -0.516 6.516 16 C -0.147 4.147 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 5.929 25.058 26.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.254 5.254 3 C -0.060 4.060 4 C -0.146 4.146 5 C -0.153 4.153 6 Cl -0.066 7.066 7 C -0.085 4.085 8 C 0.039 3.961 9 H 0.093 0.907 10 C -0.149 4.149 11 C -0.174 4.174 12 C -0.022 4.022 13 N -0.360 5.360 14 C 0.337 3.663 15 O -0.390 6.390 16 C -0.297 4.297 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.691 6.949 24.920 26.132 hybrid contribution 1.363 -1.205 -1.368 2.276 sum 5.054 5.743 23.551 24.763 Atomic orbital electron populations 1.22513 0.87354 1.02573 1.00671 1.62013 1.08081 1.12188 1.43092 1.21408 1.01735 0.88534 0.94318 1.23087 0.98980 0.96249 0.96237 1.24435 0.84283 1.05477 1.01058 1.98360 1.20359 1.97029 1.90826 1.22488 1.00224 0.93420 0.92416 1.21438 0.99595 0.90400 0.84632 0.90684 1.22594 1.00442 0.95096 0.96815 1.22862 1.02335 0.97554 0.94671 1.22289 0.92028 0.92270 0.95660 1.48590 1.43035 1.37093 1.07308 1.20028 0.81812 0.82527 0.81902 1.90689 1.28558 1.36062 1.83680 1.23519 1.04578 1.02539 0.99100 1.85375 1.47816 1.56505 0.93791 1.22856 1.23219 1.27814 0.94352 0.90945 1.24996 0.95200 0.95795 0.97610 1.70022 1.27627 1.35815 1.16860 0.86167 0.79671 0.79904 0.79758 1.20255 1.20748 1.19685 0.95016 0.90952 0.91533 0.93142 0.88990 0.84827 0.83524 0.92752 0.90703 0.90401 0.90128 0.90718 0.89974 0.90407 0.91466 0.89318 0.89376 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.19 60.06 0.55 0.72 16 2 N -0.53 -5.61 4.58 -244.38 -1.12 -6.73 16 3 C 0.07 0.66 5.26 -4.98 -0.03 0.63 16 4 C -0.13 -0.96 9.19 -36.07 -0.33 -1.29 16 5 C -0.11 -0.76 10.82 28.97 0.31 -0.45 16 6 Cl -0.09 -0.81 26.97 -51.86 -1.40 -2.21 16 7 C 0.04 0.55 4.38 -3.82 -0.02 0.53 16 8 C 0.14 1.78 2.84 -66.95 -0.19 1.59 16 9 H 0.08 1.01 6.18 -51.93 -0.32 0.69 16 10 C -0.11 -1.02 6.34 -24.77 -0.16 -1.18 16 11 C -0.14 -1.15 7.09 -24.45 -0.17 -1.32 16 12 C 0.10 1.11 6.65 -2.53 -0.02 1.09 16 13 N -0.62 -9.08 3.06 -163.01 -0.50 -9.58 16 14 C 0.55 10.60 7.58 -10.99 -0.08 10.52 16 15 O -0.52 -11.78 15.03 5.56 0.08 -11.70 16 16 C -0.15 -3.04 5.25 36.01 0.19 -2.85 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 18 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H 0.03 0.36 8.10 -51.93 -0.42 -0.06 16 27 H 0.07 0.77 6.09 -51.93 -0.32 0.45 16 28 H 0.07 0.53 6.79 -51.93 -0.35 0.18 16 29 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.09 0.94 5.78 -51.93 -0.30 0.64 16 31 H 0.13 0.81 7.03 -52.49 -0.37 0.44 16 32 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.05 0.88 6.82 -51.93 -0.35 0.53 16 34 H 0.07 0.93 7.76 -51.93 -0.40 0.53 16 35 H 0.08 0.70 7.74 -51.93 -0.40 0.30 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.84 7.51 -51.93 -0.39 0.45 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.09 1.70 7.76 -51.92 -0.40 1.29 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -33.55 374.44 -10.07 -43.62 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.53 Total: -1.07 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 0.26 Total: -4.98 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.89 Total: -41.85 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.40 Total: -2.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.55 -10.07 -43.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328708267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.001 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds