Wall clock time and date at job start Tue Mar 31 2020 16:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00215 * 2 1 4 4 C 1.50699 * 109.47051 * 66.04558 * 3 2 1 5 5 C 1.31164 * 120.00214 * 124.99786 * 4 3 2 6 6 Cl 1.73603 * 119.99702 * 0.02562 * 5 4 3 7 7 C 1.46899 * 111.00048 * 236.04329 * 2 1 3 8 8 C 1.53004 * 109.47297 * 293.11765 * 7 2 1 9 9 H 1.09005 * 109.86863 * 52.31977 * 8 7 2 10 10 C 1.54320 * 109.88203 * 291.30250 * 8 7 2 11 11 C 1.55400 * 102.82874 * 218.48065 * 10 8 7 12 12 C 1.54910 * 101.66483 * 35.34030 * 11 10 8 13 13 N 1.47022 * 109.88054 * 173.33425 * 8 7 2 14 14 C 1.34771 * 125.65025 * 298.32379 * 13 8 7 15 15 O 1.21280 * 120.00268 * 354.94259 * 14 13 8 16 16 C 1.50706 * 119.99919 * 174.94703 * 14 13 8 17 17 S 1.81002 * 109.46825 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99598 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00586 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99966 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00039 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00270 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47103 * 89.99931 * 22 20 18 24 24 H 1.48498 * 109.47198 * 209.99854 * 22 20 18 25 25 H 1.48498 * 109.46827 * 330.00015 * 22 20 18 26 26 H 1.09003 * 109.47193 * 56.45847 * 1 2 3 27 27 H 1.08998 * 109.47489 * 176.45896 * 1 2 3 28 28 H 1.09000 * 109.47346 * 296.45970 * 1 2 3 29 29 H 1.08996 * 109.47001 * 306.04600 * 3 2 1 30 30 H 1.08997 * 109.47132 * 186.04540 * 3 2 1 31 31 H 1.08000 * 120.00039 * 305.00252 * 4 3 2 32 32 H 1.08001 * 120.00147 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.46902 * 53.11742 * 7 2 1 34 34 H 1.08999 * 109.47354 * 173.11880 * 7 2 1 35 35 H 1.08995 * 110.72059 * 336.75867 * 10 8 7 36 36 H 1.09006 * 110.71801 * 100.02584 * 10 8 7 37 37 H 1.09001 * 110.88993 * 277.26461 * 11 10 8 38 38 H 1.09001 * 111.06853 * 153.49155 * 11 10 8 39 39 H 1.08998 * 110.36519 * 204.23444 * 12 11 10 40 40 H 1.08997 * 110.46074 * 81.95809 * 12 11 10 41 41 H 1.08999 * 109.46631 * 299.99209 * 16 14 13 42 42 H 1.08996 * 109.47566 * 59.99559 * 16 14 13 43 43 H 0.97000 * 119.99589 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 2.5772 2.5782 2.0429 6 17 4.2347 2.5034 1.5320 7 6 1.9954 -0.7660 -1.1375 8 6 1.6495 -2.2458 -0.9598 9 1 0.5808 -2.3570 -0.7761 10 6 2.4492 -2.8335 0.2220 11 6 2.8187 -4.2554 -0.2846 12 6 3.0449 -4.0005 -1.7958 13 7 2.0304 -2.9966 -2.1651 14 6 1.5339 -2.8001 -3.4026 15 8 0.6335 -2.0063 -3.5757 16 6 2.0977 -3.5668 -4.5711 17 16 1.2284 -3.0857 -6.0841 18 6 2.0651 -4.1032 -7.2543 19 1 2.8562 -4.7624 -6.9287 20 6 1.7074 -4.0576 -8.5946 21 7 0.7435 -3.2539 -8.9917 22 14 2.5939 -5.1369 -9.8352 23 1 1.8916 -6.4404 -9.9484 24 1 2.6044 -4.4637 -11.1587 25 1 3.9904 -5.3645 -9.3845 26 1 -0.3634 0.5678 -0.8566 27 1 -0.3634 -1.0257 -0.0635 28 1 -0.3634 0.4579 0.9200 29 1 1.5612 1.9273 -0.8309 30 1 3.0797 1.3443 -0.1082 31 1 0.6058 2.0940 1.6161 32 1 2.3203 3.0621 2.9736 33 1 1.5498 -0.3971 -2.0613 34 1 3.0781 -0.6492 -1.1844 35 1 3.3477 -2.2458 0.4098 36 1 1.8295 -2.8893 1.1171 37 1 1.9951 -4.9512 -0.1246 38 1 3.7304 -4.6163 0.1915 39 1 2.8932 -4.9193 -2.3622 40 1 4.0470 -3.6091 -1.9704 41 1 3.1593 -3.3424 -4.6747 42 1 1.9670 -4.6355 -4.4016 43 1 0.4934 -3.2223 -9.9283 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328708267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:07 Heat of formation + Delta-G solvation = -36.405218 kcal Electronic energy + Delta-G solvation = -23888.939875 eV Core-core repulsion = 20313.964903 eV Total energy + Delta-G solvation = -3574.974972 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30445 -39.17551 -38.16849 -37.34881 -34.60907 -34.23138 -32.92887 -31.30383 -30.01703 -28.29904 -27.68739 -26.86624 -24.38094 -22.95865 -21.80858 -20.73208 -20.30555 -19.48885 -18.27079 -17.53934 -17.22505 -16.90419 -16.52999 -16.47961 -16.06321 -15.80971 -15.60650 -15.01784 -14.70233 -14.53362 -14.37734 -13.99907 -13.92404 -13.59956 -13.56256 -13.21406 -13.11343 -13.04342 -12.91089 -12.80668 -12.63333 -12.39194 -12.36867 -12.07168 -11.78292 -11.73663 -11.52617 -11.40369 -11.16222 -10.95776 -10.31146 -10.11480 -9.74382 -9.37571 -8.70538 -8.36865 -6.15696 0.95195 1.22082 1.41194 1.43132 1.47344 1.53411 1.55220 2.04964 2.25310 2.97263 2.98718 3.24300 3.56046 3.64168 3.78071 3.87715 3.96954 4.13840 4.18476 4.22689 4.27365 4.35093 4.40009 4.43208 4.50838 4.62061 4.63097 4.76402 4.76833 4.86657 4.96199 5.03238 5.08661 5.17737 5.20121 5.34473 5.39267 5.39644 5.45384 5.89052 5.94953 6.17577 6.40677 7.04173 7.10774 8.72501 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.002420 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.967996 B =11567.954867 C =12055.493687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.519 5.519 3 C 0.066 3.934 4 C -0.134 4.134 5 C -0.098 4.098 6 Cl -0.111 7.111 7 C 0.052 3.948 8 C 0.139 3.861 9 H 0.063 0.937 10 C -0.099 4.099 11 C -0.123 4.123 12 C 0.087 3.913 13 N -0.614 5.614 14 C 0.545 3.455 15 O -0.563 6.563 16 C -0.119 4.119 17 S -0.151 6.151 18 C -0.545 4.545 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.258 1.258 26 H 0.011 0.989 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.176 0.824 33 H 0.010 0.990 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.729 4.511 27.486 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.242 5.242 3 C -0.062 4.062 4 C -0.153 4.153 5 C -0.143 4.143 6 Cl -0.083 7.083 7 C -0.077 4.077 8 C 0.035 3.965 9 H 0.081 0.919 10 C -0.137 4.137 11 C -0.161 4.161 12 C -0.034 4.034 13 N -0.349 5.349 14 C 0.334 3.666 15 O -0.442 6.442 16 C -0.271 4.271 17 S 0.076 5.924 18 C -0.693 4.693 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.182 1.182 26 H 0.029 0.971 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.171 0.829 32 H 0.194 0.806 33 H 0.028 0.972 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.576 5.514 27.408 28.508 hybrid contribution 0.797 -0.718 -1.982 2.254 sum 6.373 4.796 25.426 26.648 Atomic orbital electron populations 1.22545 0.87024 1.02151 1.01224 1.62097 1.08266 1.12619 1.41248 1.21422 1.01282 0.88009 0.95447 1.23088 1.00173 0.96788 0.95231 1.24835 0.83038 1.04688 1.01690 1.98363 1.21859 1.97042 1.91078 1.22339 0.99981 0.94030 0.91375 1.21645 0.99695 0.90185 0.84943 0.91935 1.22563 1.00307 0.95400 0.95450 1.22864 1.03946 0.96942 0.92340 1.22683 0.91521 0.91392 0.97831 1.48567 1.42664 1.37432 1.06261 1.19774 0.81659 0.82055 0.83149 1.90671 1.30793 1.38054 1.84634 1.23313 1.04153 1.03521 0.96073 1.85565 1.50398 1.57955 0.98441 1.23182 1.23404 1.27853 0.94865 0.89952 1.26156 0.95911 0.97207 0.99916 1.70189 1.29435 1.37711 1.17489 0.84935 0.78753 0.77711 0.76468 1.19175 1.20254 1.18154 0.97074 0.91579 0.88631 0.94682 0.89519 0.82873 0.80639 0.97188 0.90442 0.89657 0.88559 0.90372 0.86907 0.90023 0.90006 0.87831 0.87625 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.19 127.69 1.17 1.55 16 2 N -0.52 -10.84 4.58 -927.07 -4.25 -15.08 16 3 C 0.07 1.27 5.26 85.56 0.45 1.72 16 4 C -0.13 -1.79 9.19 25.48 0.23 -1.55 16 5 C -0.10 -1.16 10.82 67.62 0.73 -0.43 16 6 Cl -0.11 -1.79 26.97 -2.72 -0.07 -1.87 16 7 C 0.05 1.35 4.38 86.30 0.38 1.73 16 8 C 0.14 3.37 2.84 45.34 0.13 3.50 16 9 H 0.06 1.70 6.18 -2.38 -0.01 1.69 16 10 C -0.10 -1.54 6.34 31.87 0.20 -1.33 16 11 C -0.12 -1.62 7.09 32.07 0.23 -1.39 16 12 C 0.09 1.70 6.65 86.85 0.58 2.28 16 13 N -0.61 -17.62 3.06 -788.05 -2.41 -20.04 16 14 C 0.55 21.65 7.58 87.66 0.66 22.32 16 15 O -0.56 -27.29 15.03 -3.03 -0.05 -27.34 16 16 C -0.12 -4.99 5.25 71.24 0.37 -4.62 16 17 S -0.15 -8.58 20.57 -56.49 -1.16 -9.75 16 18 C -0.55 -31.58 9.50 67.95 0.65 -30.93 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 22 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H 0.01 0.26 8.10 -2.39 -0.02 0.24 16 27 H 0.07 1.42 6.09 -2.39 -0.01 1.41 16 28 H 0.10 1.36 6.79 -2.39 -0.02 1.34 16 29 H 0.04 0.78 8.09 -2.39 -0.02 0.76 16 30 H 0.09 1.76 5.78 -2.39 -0.01 1.75 16 31 H 0.15 1.45 7.03 -2.91 -0.02 1.43 16 32 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.01 0.35 6.82 -2.39 -0.02 0.33 16 34 H 0.08 1.94 7.76 -2.39 -0.02 1.92 16 35 H 0.08 1.25 7.74 -2.39 -0.02 1.23 16 36 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.56 7.51 -2.39 -0.02 1.54 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.10 3.98 8.14 -2.40 -0.02 3.96 16 42 H 0.11 4.01 7.76 -2.40 -0.02 3.99 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -77.19 374.44 1.62 -75.57 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.00 Total: 14.86 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 6.25 Total: -5.96 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -6.38 Total: -91.46 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.07 Total: -1.87 kcal Total: -77.19 1.62 -75.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328708267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.163 kcal (2) G-P(sol) polarization free energy of solvation -77.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds