Wall clock time and date at job start Tue Mar 31 2020 16:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99969 * 2 1 4 4 C 1.50706 * 109.46862 * 66.04532 * 3 2 1 5 5 C 1.31166 * 119.99635 * 124.99710 * 4 3 2 6 6 Cl 1.73599 * 119.99683 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99960 * 236.04786 * 2 1 3 8 8 C 1.53002 * 109.47193 * 293.95437 * 7 2 1 9 9 H 1.09004 * 109.87516 * 64.29772 * 8 7 2 10 10 C 1.54325 * 109.88360 * 185.31629 * 8 7 2 11 11 C 1.55397 * 102.82924 * 141.51903 * 10 8 7 12 12 C 1.54913 * 101.66487 * 324.66224 * 11 10 8 13 13 N 1.47023 * 109.88293 * 303.28502 * 8 7 2 14 14 C 1.34778 * 125.64871 * 61.60335 * 13 8 7 15 15 O 1.21278 * 119.99972 * 0.02562 * 14 13 8 16 16 C 1.50699 * 119.99825 * 180.02562 * 14 13 8 17 17 S 1.81007 * 109.47077 * 179.97438 * 16 14 13 18 18 C 1.76192 * 99.99919 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00675 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00117 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99579 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00391 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47150 * 60.00069 * 22 20 18 24 24 H 1.48498 * 109.47373 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47112 * 299.99931 * 22 20 18 26 26 H 1.08996 * 109.47413 * 59.99769 * 1 2 3 27 27 H 1.09003 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46927 * 300.00158 * 1 2 3 29 29 H 1.08999 * 109.47294 * 306.04666 * 3 2 1 30 30 H 1.09000 * 109.47036 * 186.04345 * 3 2 1 31 31 H 1.07995 * 120.00167 * 304.72185 * 4 3 2 32 32 H 1.07999 * 120.00168 * 0.02562 * 5 4 3 33 33 H 1.09003 * 109.47299 * 53.95165 * 7 2 1 34 34 H 1.09000 * 109.47382 * 173.95471 * 7 2 1 35 35 H 1.09002 * 110.71960 * 259.97290 * 10 8 7 36 36 H 1.09002 * 110.71848 * 23.24467 * 10 8 7 37 37 H 1.08996 * 111.04177 * 206.53106 * 11 10 8 38 38 H 1.08998 * 110.92691 * 82.74464 * 11 10 8 39 39 H 1.09005 * 110.36923 * 278.08589 * 12 11 10 40 40 H 1.08997 * 110.36565 * 155.76482 * 12 11 10 41 41 H 1.08999 * 109.47388 * 300.00213 * 16 14 13 42 42 H 1.09009 * 109.46834 * 60.00590 * 16 14 13 43 43 H 0.96998 * 120.00062 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 6 2.5772 2.5782 2.0429 6 17 2.1641 3.3571 3.5383 7 6 1.9955 -0.7659 -1.1376 8 6 1.6315 -2.2426 -0.9704 9 1 0.5488 -2.3639 -1.0079 10 6 2.2921 -3.0759 -2.0888 11 6 2.7165 -4.3738 -1.3471 12 6 3.1123 -3.8235 0.0458 13 7 2.1463 -2.7423 0.3129 14 6 1.7942 -2.2868 1.5315 15 8 0.9859 -1.3883 1.6327 16 6 2.4048 -2.8941 2.7682 17 16 1.7358 -2.0737 4.2365 18 6 2.5957 -2.9542 5.4973 19 1 3.2911 -3.7365 5.2315 20 6 2.3795 -2.6423 6.8324 21 7 1.5323 -1.6883 7.1565 22 14 3.2906 -3.5761 8.1692 23 1 4.7535 -3.3943 7.9908 24 1 2.8854 -3.0566 9.5001 25 1 2.9567 -5.0203 8.0797 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.5611 1.9274 -0.8309 30 1 3.0797 1.3444 -0.1082 31 1 0.6053 2.0979 1.6139 32 1 3.6084 2.5317 1.7251 33 1 1.5611 -0.3872 -2.0628 34 1 3.0797 -0.6611 -1.1757 35 1 1.5751 -3.2975 -2.8793 36 1 3.1637 -2.5594 -2.4909 37 1 3.5685 -4.8442 -1.8378 38 1 1.8805 -5.0689 -1.2694 39 1 4.1278 -3.4279 0.0229 40 1 3.0256 -4.6047 0.8010 41 1 2.1679 -3.9573 2.8059 42 1 3.4867 -2.7635 2.7408 43 1 1.3808 -1.4706 8.0895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328708280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:13 Heat of formation + Delta-G solvation = 9.944191 kcal Electronic energy + Delta-G solvation = -24961.879021 eV Core-core repulsion = 21388.913911 eV Total energy + Delta-G solvation = -3572.965111 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98362 -37.37015 -36.82999 -36.16465 -33.09934 -32.33500 -31.55930 -30.09067 -28.50558 -26.92902 -25.75830 -25.37994 -23.19408 -21.47904 -21.07038 -19.71860 -18.64635 -17.54552 -16.67575 -16.49612 -15.75865 -15.32793 -15.08373 -14.72732 -14.56507 -14.14108 -13.82918 -13.68471 -13.50752 -13.33070 -12.77225 -12.75386 -12.50345 -12.27627 -11.99202 -11.75401 -11.67607 -11.42043 -11.36117 -11.31223 -11.27549 -10.97721 -10.93098 -10.81222 -10.69738 -10.68619 -10.44910 -9.70181 -8.96824 -8.81151 -8.79303 -8.38892 -8.08277 -7.62705 -6.35270 -6.12126 -3.80042 2.16513 2.69356 3.11456 3.28485 3.32219 3.35221 3.49878 3.79310 4.14778 4.30291 4.44289 4.63125 4.71701 4.95705 5.05051 5.20370 5.22579 5.26172 5.28707 5.34590 5.43235 5.45127 5.52270 5.55182 5.56951 5.69489 5.70947 5.75047 5.84168 5.91955 5.96060 6.09524 6.13947 6.31473 6.42157 6.54284 6.57114 6.72351 7.27343 7.37363 7.67919 8.03980 8.43987 9.03170 9.33064 10.94925 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.008453 B = 0.004945 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.468605 B = 5661.276236 C = 8422.755427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.499 5.499 3 C 0.089 3.911 4 C -0.120 4.120 5 C -0.101 4.101 6 Cl -0.094 7.094 7 C 0.046 3.954 8 C 0.144 3.856 9 H 0.070 0.930 10 C -0.126 4.126 11 C -0.132 4.132 12 C 0.102 3.898 13 N -0.618 5.618 14 C 0.544 3.456 15 O -0.466 6.466 16 C -0.144 4.144 17 S -0.053 6.053 18 C -0.535 4.535 19 H 0.069 0.931 20 C 0.075 3.925 21 N -0.867 5.867 22 Si 0.914 3.086 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.275 1.275 26 H -0.002 1.002 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 1.218 -20.962 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.223 5.223 3 C -0.038 4.038 4 C -0.140 4.140 5 C -0.146 4.146 6 Cl -0.065 7.065 7 C -0.083 4.083 8 C 0.039 3.961 9 H 0.088 0.912 10 C -0.165 4.165 11 C -0.170 4.170 12 C -0.022 4.022 13 N -0.358 5.358 14 C 0.331 3.669 15 O -0.335 6.335 16 C -0.295 4.295 17 S 0.174 5.826 18 C -0.684 4.684 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.502 5.502 22 Si 0.741 3.259 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.200 1.200 26 H 0.017 0.983 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.156 0.844 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.436 2.554 -19.983 20.196 hybrid contribution 1.432 -1.341 0.166 1.969 sum 2.868 1.213 -19.817 20.060 Atomic orbital electron populations 1.22176 0.86414 1.01955 0.98529 1.62353 1.08931 1.10648 1.40356 1.21056 0.99775 0.89352 0.93665 1.22897 0.99831 0.95404 0.95825 1.24167 0.99839 1.01973 0.88607 1.98371 1.94025 1.79826 1.34299 1.22599 1.00105 0.93816 0.91812 1.21497 0.98358 0.92312 0.83924 0.91189 1.22692 1.00919 0.95989 0.96896 1.22797 1.01814 0.97053 0.95332 1.22203 0.93022 0.90235 0.96742 1.48437 1.44958 1.37697 1.04681 1.19705 0.82613 0.82495 0.82073 1.90726 1.31880 1.26403 1.84497 1.23500 1.03567 1.03638 0.98795 1.85315 1.57172 1.48258 0.91878 1.22843 1.29493 1.23124 0.92895 0.91319 1.24944 0.95344 0.95281 0.97864 1.70012 1.33238 1.28580 1.18403 0.86298 0.79838 0.79762 0.80039 1.20025 1.20879 1.20048 0.98346 0.91153 0.91137 0.94403 0.90951 0.86130 0.84428 0.94861 0.91062 0.90363 0.90646 0.90178 0.90698 0.92002 0.90724 0.90297 0.90227 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 7.13 60.07 0.43 1.24 16 2 N -0.50 -7.07 2.09 -244.37 -0.51 -7.58 16 3 C 0.09 1.13 5.41 -4.97 -0.03 1.10 16 4 C -0.12 -1.74 8.91 -36.07 -0.32 -2.06 16 5 C -0.10 -1.47 10.43 28.97 0.30 -1.17 16 6 Cl -0.09 -1.53 29.10 -51.86 -1.51 -3.03 16 7 C 0.05 0.52 4.54 -3.82 -0.02 0.50 16 8 C 0.14 1.63 2.89 -66.95 -0.19 1.43 16 9 H 0.07 0.86 6.70 -51.93 -0.35 0.51 16 10 C -0.13 -0.98 6.50 -24.77 -0.16 -1.14 16 11 C -0.13 -1.03 7.09 -24.45 -0.17 -1.21 16 12 C 0.10 1.10 6.69 -2.53 -0.02 1.09 16 13 N -0.62 -8.67 3.07 -163.01 -0.50 -9.17 16 14 C 0.54 10.13 7.44 -10.99 -0.08 10.04 16 15 O -0.47 -9.60 10.04 5.56 0.06 -9.54 16 16 C -0.14 -3.02 5.16 36.01 0.19 -2.83 16 17 S -0.05 -1.45 20.57 -107.50 -2.21 -3.66 16 18 C -0.54 -15.53 9.50 30.94 0.29 -15.24 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.17 5.49 -17.43 -0.10 2.08 16 21 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 22 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 27 H 0.07 1.08 5.50 -51.93 -0.29 0.79 16 28 H 0.07 1.14 6.58 -51.93 -0.34 0.80 16 29 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.07 0.85 7.58 -51.93 -0.39 0.46 16 31 H 0.12 1.87 6.96 -52.49 -0.37 1.51 16 32 H 0.14 1.74 7.84 -52.49 -0.41 1.33 16 33 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.52 7.80 -51.93 -0.40 0.11 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 41 H 0.08 1.57 7.85 -51.92 -0.41 1.17 16 42 H 0.08 1.62 8.14 -51.91 -0.42 1.19 16 43 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -33.39 369.50 -9.95 -43.34 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.68 Total: -0.78 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 0.12 Total: -6.16 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.28 Total: -42.57 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.06 Total: -9.54 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -1.51 Total: -3.03 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.39 -9.95 -43.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328708280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.286 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds