Wall clock time and date at job start Tue Mar 31 2020 16:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99969 * 2 1 4 4 C 1.50706 * 109.46862 * 66.04532 * 3 2 1 5 5 C 1.31166 * 119.99635 * 124.99710 * 4 3 2 6 6 Cl 1.73599 * 119.99683 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99960 * 236.04786 * 2 1 3 8 8 C 1.53002 * 109.47193 * 293.95437 * 7 2 1 9 9 H 1.09004 * 109.87516 * 64.29772 * 8 7 2 10 10 C 1.54325 * 109.88360 * 185.31629 * 8 7 2 11 11 C 1.55397 * 102.82924 * 141.51903 * 10 8 7 12 12 C 1.54913 * 101.66487 * 324.66224 * 11 10 8 13 13 N 1.47023 * 109.88293 * 303.28502 * 8 7 2 14 14 C 1.34778 * 125.64871 * 61.60335 * 13 8 7 15 15 O 1.21278 * 119.99972 * 0.02562 * 14 13 8 16 16 C 1.50699 * 119.99825 * 180.02562 * 14 13 8 17 17 S 1.81007 * 109.47077 * 179.97438 * 16 14 13 18 18 C 1.76192 * 99.99919 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00675 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00117 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99579 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00391 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47150 * 60.00069 * 22 20 18 24 24 H 1.48498 * 109.47373 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47112 * 299.99931 * 22 20 18 26 26 H 1.08996 * 109.47413 * 59.99769 * 1 2 3 27 27 H 1.09003 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46927 * 300.00158 * 1 2 3 29 29 H 1.08999 * 109.47294 * 306.04666 * 3 2 1 30 30 H 1.09000 * 109.47036 * 186.04345 * 3 2 1 31 31 H 1.07995 * 120.00167 * 304.72185 * 4 3 2 32 32 H 1.07999 * 120.00168 * 0.02562 * 5 4 3 33 33 H 1.09003 * 109.47299 * 53.95165 * 7 2 1 34 34 H 1.09000 * 109.47382 * 173.95471 * 7 2 1 35 35 H 1.09002 * 110.71960 * 259.97290 * 10 8 7 36 36 H 1.09002 * 110.71848 * 23.24467 * 10 8 7 37 37 H 1.08996 * 111.04177 * 206.53106 * 11 10 8 38 38 H 1.08998 * 110.92691 * 82.74464 * 11 10 8 39 39 H 1.09005 * 110.36923 * 278.08589 * 12 11 10 40 40 H 1.08997 * 110.36565 * 155.76482 * 12 11 10 41 41 H 1.08999 * 109.47388 * 300.00213 * 16 14 13 42 42 H 1.09009 * 109.46834 * 60.00590 * 16 14 13 43 43 H 0.96998 * 120.00062 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 6 2.5772 2.5782 2.0429 6 17 2.1641 3.3571 3.5383 7 6 1.9955 -0.7659 -1.1376 8 6 1.6315 -2.2426 -0.9704 9 1 0.5488 -2.3639 -1.0079 10 6 2.2921 -3.0759 -2.0888 11 6 2.7165 -4.3738 -1.3471 12 6 3.1123 -3.8235 0.0458 13 7 2.1463 -2.7423 0.3129 14 6 1.7942 -2.2868 1.5315 15 8 0.9859 -1.3883 1.6327 16 6 2.4048 -2.8941 2.7682 17 16 1.7358 -2.0737 4.2365 18 6 2.5957 -2.9542 5.4973 19 1 3.2911 -3.7365 5.2315 20 6 2.3795 -2.6423 6.8324 21 7 1.5323 -1.6883 7.1565 22 14 3.2906 -3.5761 8.1692 23 1 4.7535 -3.3943 7.9908 24 1 2.8854 -3.0566 9.5001 25 1 2.9567 -5.0203 8.0797 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.5611 1.9274 -0.8309 30 1 3.0797 1.3444 -0.1082 31 1 0.6053 2.0979 1.6139 32 1 3.6084 2.5317 1.7251 33 1 1.5611 -0.3872 -2.0628 34 1 3.0797 -0.6611 -1.1757 35 1 1.5751 -3.2975 -2.8793 36 1 3.1637 -2.5594 -2.4909 37 1 3.5685 -4.8442 -1.8378 38 1 1.8805 -5.0689 -1.2694 39 1 4.1278 -3.4279 0.0229 40 1 3.0256 -4.6047 0.8010 41 1 2.1679 -3.9573 2.8059 42 1 3.4867 -2.7635 2.7408 43 1 1.3808 -1.4706 8.0895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328708280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:12 Heat of formation + Delta-G solvation = -9.554642 kcal Electronic energy + Delta-G solvation = -24962.724554 eV Core-core repulsion = 21388.913911 eV Total energy + Delta-G solvation = -3573.810644 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07144 -38.52105 -37.97893 -37.36822 -34.54955 -34.20494 -32.67861 -31.02649 -29.97024 -28.03379 -27.59577 -26.67103 -24.23496 -22.47381 -21.93908 -20.83437 -20.07605 -19.26695 -17.96250 -17.52523 -16.92598 -16.85138 -16.46808 -16.12257 -16.00597 -15.69036 -15.13423 -14.82469 -14.61737 -14.42865 -14.17750 -13.86918 -13.69007 -13.44349 -13.22817 -13.08056 -12.99286 -12.86750 -12.83943 -12.60169 -12.51973 -12.31575 -12.21477 -12.01497 -11.75778 -11.68002 -11.64886 -11.46466 -11.10156 -10.23367 -10.16121 -9.99047 -9.49055 -8.67067 -8.55692 -8.30788 -6.05400 1.00763 1.30307 1.42460 1.47959 1.50817 1.61441 2.05481 2.28482 2.40328 3.02449 3.20193 3.38056 3.71237 3.81181 3.88600 3.97822 4.14995 4.24655 4.30367 4.34987 4.38953 4.40456 4.50524 4.54869 4.58124 4.67366 4.69404 4.74360 4.84003 4.93593 5.03251 5.15489 5.19955 5.27480 5.38065 5.42177 5.42808 5.43242 5.70806 6.21841 6.29208 6.37485 6.79037 7.10255 7.65233 8.77446 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.008453 B = 0.004945 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.468605 B = 5661.276236 C = 8422.755427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.526 5.526 3 C 0.095 3.905 4 C -0.122 4.122 5 C -0.109 4.109 6 Cl -0.116 7.116 7 C 0.048 3.952 8 C 0.137 3.863 9 H 0.057 0.943 10 C -0.114 4.114 11 C -0.121 4.121 12 C 0.090 3.910 13 N -0.613 5.613 14 C 0.541 3.459 15 O -0.493 6.493 16 C -0.119 4.119 17 S -0.130 6.130 18 C -0.550 4.550 19 H 0.074 0.926 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.991 3.009 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.263 1.263 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.160 0.840 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 -0.430 -23.479 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.250 5.250 3 C -0.033 4.033 4 C -0.142 4.142 5 C -0.154 4.154 6 Cl -0.088 7.088 7 C -0.080 4.080 8 C 0.034 3.966 9 H 0.075 0.925 10 C -0.152 4.152 11 C -0.159 4.159 12 C -0.032 4.032 13 N -0.351 5.351 14 C 0.327 3.673 15 O -0.365 6.365 16 C -0.271 4.271 17 S 0.098 5.902 18 C -0.698 4.698 19 H 0.092 0.908 20 C -0.188 4.188 21 N -0.545 5.545 22 Si 0.813 3.187 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.187 1.187 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.178 0.822 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.393 0.879 -22.557 22.827 hybrid contribution 0.814 -0.870 0.812 1.441 sum 4.206 0.009 -21.745 22.148 Atomic orbital electron populations 1.21924 0.87098 1.00745 0.97993 1.62220 1.08604 1.11702 1.42508 1.21053 1.00541 0.88818 0.92856 1.23038 0.98950 0.95243 0.96943 1.24466 1.00952 1.02250 0.87735 1.98363 1.94233 1.80316 1.35904 1.22637 1.00487 0.93217 0.91668 1.21770 0.98080 0.93224 0.83568 0.92468 1.22701 1.01744 0.95011 0.95760 1.22782 1.02835 0.97076 0.93205 1.22496 0.92795 0.89245 0.98690 1.48311 1.44746 1.37857 1.04143 1.19280 0.82649 0.82501 0.82916 1.90738 1.33063 1.27616 1.85126 1.23315 1.03477 1.03255 0.97051 1.85419 1.58741 1.50327 0.95760 1.23179 1.29622 1.23295 0.93678 0.90751 1.26029 0.96101 0.96128 1.00545 1.70179 1.34965 1.30389 1.19007 0.85109 0.78636 0.78534 0.76388 1.18823 1.20318 1.18725 0.96212 0.92671 0.94153 0.92314 0.89664 0.88033 0.82224 0.92586 0.90297 0.88303 0.88899 0.87417 0.90827 0.90969 0.91463 0.89530 0.89663 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.02 7.13 127.69 0.91 2.93 16 2 N -0.53 -14.38 2.09 -927.04 -1.94 -16.32 16 3 C 0.09 2.27 5.41 85.56 0.46 2.73 16 4 C -0.12 -3.60 8.91 25.48 0.23 -3.37 16 5 C -0.11 -3.24 10.43 67.62 0.71 -2.53 16 6 Cl -0.12 -3.95 29.10 -2.72 -0.08 -4.03 16 7 C 0.05 0.96 4.54 86.30 0.39 1.35 16 8 C 0.14 2.77 2.89 45.34 0.13 2.90 16 9 H 0.06 1.32 6.70 -2.38 -0.02 1.31 16 10 C -0.11 -1.27 6.50 31.87 0.21 -1.06 16 11 C -0.12 -1.42 7.09 32.07 0.23 -1.19 16 12 C 0.09 1.73 6.69 86.86 0.58 2.31 16 13 N -0.61 -16.25 3.07 -788.04 -2.42 -18.67 16 14 C 0.54 20.18 7.44 87.66 0.65 20.83 16 15 O -0.49 -20.93 10.04 -3.02 -0.03 -20.96 16 16 C -0.12 -5.05 5.16 71.24 0.37 -4.68 16 17 S -0.13 -7.34 20.57 -56.49 -1.16 -8.51 16 18 C -0.55 -32.43 9.50 67.95 0.65 -31.79 16 19 H 0.07 4.14 7.80 -2.91 -0.02 4.11 16 20 C 0.02 0.99 5.49 84.86 0.47 1.45 16 21 N -0.91 -57.16 13.22 21.65 0.29 -56.87 16 22 Si 0.99 44.93 29.55 68.60 2.03 46.96 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 26 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.05 1.73 5.50 -2.39 -0.01 1.71 16 28 H 0.04 1.37 6.58 -2.39 -0.02 1.36 16 29 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 30 H 0.09 1.81 7.58 -2.39 -0.02 1.79 16 31 H 0.10 3.36 6.96 -2.91 -0.02 3.34 16 32 H 0.16 3.93 7.84 -2.91 -0.02 3.90 16 33 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 34 H 0.08 1.47 7.86 -2.39 -0.02 1.45 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.78 7.80 -2.39 -0.02 0.76 16 37 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.07 1.39 7.48 -2.39 -0.02 1.37 16 41 H 0.09 3.47 7.85 -2.40 -0.02 3.45 16 42 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 43 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -75.80 369.50 3.66 -72.14 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.99 Total: 16.37 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 5.98 Total: -10.11 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -4.07 Total: -91.86 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.03 Total: -20.96 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -7.34 SS G_CDS: -1.16 Total: -8.51 kcal Atomic # 17 Polarization: -3.95 SS G_CDS: -0.08 Total: -4.03 kcal Total: -75.80 3.66 -72.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328708280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.588 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds