Wall clock time and date at job start Tue Mar 31 2020 16:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.50702 * 109.46939 * 293.95226 * 3 2 1 5 5 C 1.31166 * 119.99872 * 125.00103 * 4 3 2 6 6 Cl 1.73597 * 119.99999 * 180.02562 * 5 4 3 7 7 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 8 8 C 1.53000 * 109.46769 * 66.05138 * 7 2 1 9 9 H 1.09000 * 109.87286 * 295.69608 * 8 7 2 10 10 C 1.54325 * 109.87799 * 174.68430 * 8 7 2 11 11 C 1.55405 * 102.82526 * 218.47794 * 10 8 7 12 12 C 1.54909 * 101.66665 * 35.33788 * 11 10 8 13 13 N 1.47020 * 109.88328 * 56.71573 * 8 7 2 14 14 C 1.34771 * 125.64889 * 298.31812 * 13 8 7 15 15 O 1.21284 * 120.00204 * 0.02562 * 14 13 8 16 16 C 1.50695 * 120.00112 * 180.02562 * 14 13 8 17 17 S 1.80999 * 109.47327 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00273 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00162 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99851 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99937 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47278 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47452 * 120.00099 * 22 20 18 25 25 H 1.48509 * 109.47085 * 240.00175 * 22 20 18 26 26 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 27 27 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 28 28 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 29 29 H 1.09003 * 109.47188 * 53.95311 * 3 2 1 30 30 H 1.08993 * 109.47221 * 173.95234 * 3 2 1 31 31 H 1.08000 * 119.99919 * 305.00212 * 4 3 2 32 32 H 1.08000 * 119.99716 * 359.97438 * 5 4 3 33 33 H 1.09002 * 109.47401 * 306.04845 * 7 2 1 34 34 H 1.09001 * 109.46874 * 186.04858 * 7 2 1 35 35 H 1.08993 * 110.72433 * 336.74774 * 10 8 7 36 36 H 1.09000 * 110.71758 * 100.02924 * 10 8 7 37 37 H 1.08997 * 110.89294 * 277.26529 * 11 10 8 38 38 H 1.08999 * 111.06984 * 153.49322 * 11 10 8 39 39 H 1.08996 * 110.36664 * 204.23319 * 12 11 10 40 40 H 1.09003 * 110.45807 * 81.95963 * 12 11 10 41 41 H 1.09007 * 109.47328 * 300.00274 * 16 14 13 42 42 H 1.09000 * 109.47571 * 59.99966 * 16 14 13 43 43 H 0.97000 * 119.99826 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 0.9894 3.1878 -1.2873 6 17 0.5758 3.9657 -2.7831 7 6 1.9954 -0.7659 1.1377 8 6 1.6315 -2.2425 0.9704 9 1 0.5490 -2.3639 1.0079 10 6 2.2922 -3.0758 2.0888 11 6 2.7167 -4.3737 1.3471 12 6 3.1124 -3.8234 -0.0458 13 7 2.1465 -2.7422 -0.3128 14 6 1.7933 -2.2877 -1.5315 15 8 0.9846 -1.3896 -1.6328 16 6 2.4033 -2.8954 -2.7682 17 16 1.7329 -2.0764 -4.2365 18 6 2.5923 -2.9573 -5.4975 19 1 3.2877 -3.7398 -5.2315 20 6 2.3750 -2.6463 -6.8327 21 7 1.5272 -1.6930 -7.1568 22 14 3.2856 -3.5807 -8.1695 23 1 4.1736 -4.5952 -7.5472 24 1 2.3052 -4.2584 -9.0553 25 1 4.1015 -2.6315 -8.9688 26 1 -0.3633 0.4513 0.9233 27 1 -0.3634 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0708 29 1 1.5610 1.9274 0.8309 30 1 3.0796 1.3445 0.1083 31 1 1.9130 1.5921 -2.2382 32 1 0.7129 3.6425 -0.3476 33 1 1.5611 -0.3871 2.0629 34 1 3.0797 -0.6609 1.1757 35 1 3.1637 -2.5594 2.4909 36 1 1.5752 -3.2975 2.8793 37 1 1.8802 -5.0683 1.2695 38 1 3.5685 -4.8447 1.8377 39 1 3.0258 -4.6046 -0.8010 40 1 4.1280 -3.4281 -0.0247 41 1 3.4852 -2.7646 -2.7417 42 1 2.1668 -3.9588 -2.8051 43 1 1.3756 -1.4754 -8.0898 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328708282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:15 Heat of formation + Delta-G solvation = 8.636055 kcal Electronic energy + Delta-G solvation = -24834.617929 eV Core-core repulsion = 21261.596093 eV Total energy + Delta-G solvation = -3573.021836 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.99884 -37.42259 -36.85730 -36.26671 -33.14957 -32.36157 -31.57413 -30.05473 -28.52376 -27.06106 -25.71434 -25.40836 -23.15772 -21.44747 -21.07395 -19.86116 -18.66106 -17.56364 -16.69043 -16.39877 -15.92038 -15.48503 -14.79710 -14.74189 -14.64398 -14.17730 -14.03767 -13.66418 -13.52292 -13.37808 -12.83389 -12.68434 -12.36415 -12.29785 -12.19237 -11.71806 -11.61647 -11.49570 -11.40468 -11.34560 -11.30374 -11.02616 -10.92683 -10.89351 -10.75634 -10.69485 -10.54269 -9.70807 -9.00780 -8.89152 -8.79207 -8.42521 -8.11032 -7.66934 -6.38832 -6.15157 -3.83295 2.06524 2.54559 3.09456 3.25006 3.31381 3.35643 3.47437 3.77029 4.10580 4.27725 4.43512 4.60291 4.70997 4.98662 5.00716 5.16070 5.19989 5.23290 5.27147 5.29931 5.42711 5.45808 5.52102 5.55935 5.57242 5.69147 5.70778 5.75004 5.82696 5.92200 5.97478 6.08518 6.12761 6.29657 6.39725 6.50344 6.57877 6.70902 7.26590 7.37007 7.66259 8.02330 8.42007 9.01035 9.30559 10.92098 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.007693 B = 0.004846 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.763258 B = 5776.881131 C = 9044.657149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.499 5.499 3 C 0.088 3.912 4 C -0.107 4.107 5 C -0.126 4.126 6 Cl -0.096 7.096 7 C 0.046 3.954 8 C 0.144 3.856 9 H 0.070 0.930 10 C -0.127 4.127 11 C -0.132 4.132 12 C 0.102 3.898 13 N -0.618 5.618 14 C 0.544 3.456 15 O -0.467 6.467 16 C -0.144 4.144 17 S -0.056 6.056 18 C -0.534 4.534 19 H 0.070 0.930 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.915 3.085 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.280 1.280 26 H -0.003 1.003 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.114 1.224 21.267 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.223 5.223 3 C -0.040 4.040 4 C -0.126 4.126 5 C -0.171 4.171 6 Cl -0.068 7.068 7 C -0.083 4.083 8 C 0.039 3.961 9 H 0.088 0.912 10 C -0.165 4.165 11 C -0.170 4.170 12 C -0.022 4.022 13 N -0.357 5.357 14 C 0.331 3.669 15 O -0.336 6.336 16 C -0.295 4.295 17 S 0.170 5.830 18 C -0.682 4.682 19 H 0.088 0.912 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.742 3.258 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.015 0.985 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.896 2.552 20.298 20.477 hybrid contribution 1.376 -1.257 -0.122 1.868 sum 2.272 1.295 20.175 20.344 Atomic orbital electron populations 1.22180 0.86289 1.02540 0.98023 1.62284 1.08975 1.10568 1.40478 1.21093 1.00181 0.89542 0.93200 1.23224 0.95157 0.93347 1.00911 1.24214 1.05042 0.97928 0.89929 1.98370 1.92506 1.81265 1.34636 1.22601 1.00131 0.93795 0.91771 1.21490 0.98375 0.92305 0.83910 0.91195 1.22693 1.00925 0.95990 0.96894 1.22797 1.01821 0.97052 0.95321 1.22205 0.93029 0.90224 0.96753 1.48430 1.44909 1.37700 1.04678 1.19709 0.82569 0.82521 0.82092 1.90737 1.31845 1.26531 1.84520 1.23500 1.03598 1.03685 0.98702 1.85295 1.57252 1.48388 0.92027 1.22925 1.29356 1.23090 0.92821 0.91161 1.24959 0.95339 0.95302 0.97920 1.70031 1.33285 1.28716 1.18265 0.86176 0.79333 0.79443 0.80897 1.19682 1.20646 1.20628 0.98459 0.91256 0.90847 0.95242 0.90002 0.84602 0.84659 0.94857 0.90980 0.90627 0.90362 0.90699 0.90160 0.90725 0.91950 0.90144 0.90235 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 7.20 60.07 0.43 1.26 16 2 N -0.50 -7.01 2.09 -244.36 -0.51 -7.52 16 3 C 0.09 1.10 5.41 -4.97 -0.03 1.07 16 4 C -0.11 -1.54 8.29 -36.07 -0.30 -1.84 16 5 C -0.13 -1.64 10.43 28.97 0.30 -1.34 16 6 Cl -0.10 -1.41 29.10 -51.86 -1.51 -2.92 16 7 C 0.05 0.52 4.54 -3.82 -0.02 0.50 16 8 C 0.14 1.61 2.89 -66.95 -0.19 1.42 16 9 H 0.07 0.86 6.79 -51.93 -0.35 0.51 16 10 C -0.13 -0.97 6.50 -24.76 -0.16 -1.13 16 11 C -0.13 -1.02 7.09 -24.45 -0.17 -1.19 16 12 C 0.10 1.08 6.69 -2.53 -0.02 1.07 16 13 N -0.62 -8.53 3.06 -163.02 -0.50 -9.03 16 14 C 0.54 9.97 7.44 -10.99 -0.08 9.88 16 15 O -0.47 -9.51 9.99 5.55 0.06 -9.45 16 16 C -0.14 -2.96 5.16 36.00 0.19 -2.78 16 17 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 18 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 22 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 27 H 0.07 1.15 7.17 -51.93 -0.37 0.77 16 28 H 0.07 1.15 5.48 -51.93 -0.28 0.87 16 29 H 0.03 0.32 7.77 -51.93 -0.40 -0.08 16 30 H 0.08 0.96 7.93 -51.93 -0.41 0.55 16 31 H 0.14 2.43 8.06 -52.49 -0.42 2.00 16 32 H 0.14 1.42 7.84 -52.49 -0.41 1.01 16 33 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 35 H 0.08 0.51 7.80 -51.93 -0.40 0.11 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.60 8.14 -51.91 -0.42 1.18 16 42 H 0.08 1.56 7.85 -51.92 -0.41 1.16 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -32.72 370.65 -10.00 -42.72 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.77 Total: -0.58 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 0.15 Total: -6.08 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.28 Total: -42.21 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.06 Total: -9.45 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.51 Total: -2.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.72 -10.00 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328708282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.356 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds