Wall clock time and date at job start Tue Mar 31 2020 16:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.50702 * 109.46939 * 293.95226 * 3 2 1 5 5 C 1.31166 * 119.99872 * 125.00103 * 4 3 2 6 6 Cl 1.73597 * 119.99999 * 180.02562 * 5 4 3 7 7 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 8 8 C 1.53000 * 109.46769 * 66.05138 * 7 2 1 9 9 H 1.09000 * 109.87286 * 295.69608 * 8 7 2 10 10 C 1.54325 * 109.87799 * 174.68430 * 8 7 2 11 11 C 1.55405 * 102.82526 * 218.47794 * 10 8 7 12 12 C 1.54909 * 101.66665 * 35.33788 * 11 10 8 13 13 N 1.47020 * 109.88328 * 56.71573 * 8 7 2 14 14 C 1.34771 * 125.64889 * 298.31812 * 13 8 7 15 15 O 1.21284 * 120.00204 * 0.02562 * 14 13 8 16 16 C 1.50695 * 120.00112 * 180.02562 * 14 13 8 17 17 S 1.80999 * 109.47327 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00273 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.38802 * 120.00162 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99851 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99937 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47278 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47452 * 120.00099 * 22 20 18 25 25 H 1.48509 * 109.47085 * 240.00175 * 22 20 18 26 26 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 27 27 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 28 28 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 29 29 H 1.09003 * 109.47188 * 53.95311 * 3 2 1 30 30 H 1.08993 * 109.47221 * 173.95234 * 3 2 1 31 31 H 1.08000 * 119.99919 * 305.00212 * 4 3 2 32 32 H 1.08000 * 119.99716 * 359.97438 * 5 4 3 33 33 H 1.09002 * 109.47401 * 306.04845 * 7 2 1 34 34 H 1.09001 * 109.46874 * 186.04858 * 7 2 1 35 35 H 1.08993 * 110.72433 * 336.74774 * 10 8 7 36 36 H 1.09000 * 110.71758 * 100.02924 * 10 8 7 37 37 H 1.08997 * 110.89294 * 277.26529 * 11 10 8 38 38 H 1.08999 * 111.06984 * 153.49322 * 11 10 8 39 39 H 1.08996 * 110.36664 * 204.23319 * 12 11 10 40 40 H 1.09003 * 110.45807 * 81.95963 * 12 11 10 41 41 H 1.09007 * 109.47328 * 300.00274 * 16 14 13 42 42 H 1.09000 * 109.47571 * 59.99966 * 16 14 13 43 43 H 0.97000 * 119.99826 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 0.9894 3.1878 -1.2873 6 17 0.5758 3.9657 -2.7831 7 6 1.9954 -0.7659 1.1377 8 6 1.6315 -2.2425 0.9704 9 1 0.5490 -2.3639 1.0079 10 6 2.2922 -3.0758 2.0888 11 6 2.7167 -4.3737 1.3471 12 6 3.1124 -3.8234 -0.0458 13 7 2.1465 -2.7422 -0.3128 14 6 1.7933 -2.2877 -1.5315 15 8 0.9846 -1.3896 -1.6328 16 6 2.4033 -2.8954 -2.7682 17 16 1.7329 -2.0764 -4.2365 18 6 2.5923 -2.9573 -5.4975 19 1 3.2877 -3.7398 -5.2315 20 6 2.3750 -2.6463 -6.8327 21 7 1.5272 -1.6930 -7.1568 22 14 3.2856 -3.5807 -8.1695 23 1 4.1736 -4.5952 -7.5472 24 1 2.3052 -4.2584 -9.0553 25 1 4.1015 -2.6315 -8.9688 26 1 -0.3633 0.4513 0.9233 27 1 -0.3634 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0708 29 1 1.5610 1.9274 0.8309 30 1 3.0796 1.3445 0.1083 31 1 1.9130 1.5921 -2.2382 32 1 0.7129 3.6425 -0.3476 33 1 1.5611 -0.3871 2.0629 34 1 3.0797 -0.6609 1.1757 35 1 3.1637 -2.5594 2.4909 36 1 1.5752 -3.2975 2.8793 37 1 1.8802 -5.0683 1.2695 38 1 3.5685 -4.8447 1.8377 39 1 3.0258 -4.6046 -0.8010 40 1 4.1280 -3.4281 -0.0247 41 1 3.4852 -2.7646 -2.7417 42 1 2.1668 -3.9588 -2.8051 43 1 1.3756 -1.4754 -8.0898 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328708282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:14 Heat of formation + Delta-G solvation = -10.431195 kcal Electronic energy + Delta-G solvation = -24835.444747 eV Core-core repulsion = 21261.596093 eV Total energy + Delta-G solvation = -3573.848654 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07964 -38.55061 -38.00152 -37.38721 -34.56731 -34.21794 -32.68334 -30.98377 -29.97326 -28.15636 -27.61960 -26.60325 -24.19032 -22.41854 -21.95186 -20.94572 -20.09035 -19.27669 -17.94310 -17.45718 -17.02213 -16.86957 -16.54967 -16.13970 -15.80344 -15.70092 -15.26882 -14.83577 -14.62984 -14.52301 -14.17570 -13.84635 -13.54851 -13.40116 -13.33769 -13.08045 -13.01701 -12.88412 -12.67359 -12.60799 -12.57118 -12.50757 -12.24322 -12.01548 -11.82208 -11.66351 -11.63044 -11.46945 -11.14196 -10.23294 -10.17644 -10.00033 -9.51000 -8.69782 -8.58257 -8.32887 -6.07761 0.96409 1.29871 1.39622 1.44602 1.48617 1.61224 2.04217 2.27116 2.39207 3.00766 3.16470 3.36127 3.70705 3.79692 3.94976 3.96611 4.11761 4.20699 4.29110 4.35080 4.39801 4.44832 4.51275 4.54937 4.58647 4.66783 4.69328 4.75458 4.85062 4.93516 5.03166 5.15586 5.20285 5.27703 5.36292 5.39070 5.42473 5.42925 5.70130 6.20951 6.30631 6.37289 6.78328 7.08627 7.64222 8.76059 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.007693 B = 0.004846 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.763258 B = 5776.881131 C = 9044.657149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.527 5.527 3 C 0.095 3.905 4 C -0.121 4.121 5 C -0.112 4.112 6 Cl -0.116 7.116 7 C 0.049 3.951 8 C 0.137 3.863 9 H 0.057 0.943 10 C -0.114 4.114 11 C -0.121 4.121 12 C 0.090 3.910 13 N -0.613 5.613 14 C 0.540 3.460 15 O -0.494 6.494 16 C -0.119 4.119 17 S -0.134 6.134 18 C -0.547 4.547 19 H 0.075 0.925 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.994 3.006 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.274 1.274 26 H 0.020 0.980 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -0.006 24.060 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.252 5.252 3 C -0.032 4.032 4 C -0.141 4.141 5 C -0.156 4.156 6 Cl -0.088 7.088 7 C -0.080 4.080 8 C 0.034 3.966 9 H 0.075 0.925 10 C -0.152 4.152 11 C -0.159 4.159 12 C -0.032 4.032 13 N -0.350 5.350 14 C 0.326 3.674 15 O -0.367 6.367 16 C -0.270 4.270 17 S 0.093 5.907 18 C -0.695 4.695 19 H 0.093 0.907 20 C -0.189 4.189 21 N -0.547 5.547 22 Si 0.816 3.184 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.199 1.199 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.189 0.811 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.462 1.295 23.143 23.310 hybrid contribution 0.899 -0.898 -0.883 1.547 sum 3.362 0.398 22.260 22.516 Atomic orbital electron populations 1.21897 0.87026 1.00933 0.97647 1.62136 1.08573 1.11796 1.42645 1.21054 1.00664 0.89012 0.92499 1.23091 0.96565 0.94090 1.00336 1.24570 1.03677 0.97257 0.90109 1.98369 1.92573 1.81503 1.36358 1.22639 1.00487 0.93207 0.91641 1.21765 0.98073 0.93243 0.83564 0.92507 1.22702 1.01746 0.95012 0.95752 1.22782 1.02841 0.97074 0.93195 1.22499 0.92794 0.89234 0.98708 1.48308 1.44704 1.37868 1.04140 1.19290 0.82619 0.82523 0.82946 1.90750 1.33048 1.27722 1.85148 1.23313 1.03518 1.03287 0.96919 1.85414 1.58818 1.50493 0.95945 1.23246 1.29474 1.23217 0.93598 0.90673 1.26054 0.96102 0.96158 1.00609 1.70190 1.35018 1.30528 1.18975 0.84980 0.78063 0.78133 0.77242 1.18209 1.19848 1.19917 0.96186 0.94379 0.92701 0.92634 0.89257 0.89134 0.81140 0.92524 0.90283 0.88885 0.88291 0.90826 0.87396 0.91447 0.90939 0.89552 0.89448 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.12 7.20 127.69 0.92 3.04 16 2 N -0.53 -14.48 2.09 -927.03 -1.94 -16.42 16 3 C 0.10 2.28 5.41 85.56 0.46 2.74 16 4 C -0.12 -3.59 8.29 25.48 0.21 -3.37 16 5 C -0.11 -2.89 10.43 67.62 0.71 -2.18 16 6 Cl -0.12 -3.52 29.10 -2.72 -0.08 -3.60 16 7 C 0.05 0.97 4.54 86.30 0.39 1.36 16 8 C 0.14 2.77 2.89 45.34 0.13 2.90 16 9 H 0.06 1.32 6.79 -2.39 -0.02 1.30 16 10 C -0.11 -1.27 6.50 31.87 0.21 -1.06 16 11 C -0.12 -1.42 7.09 32.07 0.23 -1.19 16 12 C 0.09 1.73 6.69 86.86 0.58 2.31 16 13 N -0.61 -16.27 3.06 -788.07 -2.41 -18.68 16 14 C 0.54 20.18 7.44 87.66 0.65 20.83 16 15 O -0.49 -21.04 9.99 -3.04 -0.03 -21.07 16 16 C -0.12 -5.01 5.16 71.23 0.37 -4.64 16 17 S -0.13 -7.58 20.57 -56.49 -1.16 -8.74 16 18 C -0.55 -32.23 9.50 67.95 0.65 -31.58 16 19 H 0.08 4.19 7.80 -2.91 -0.02 4.16 16 20 C 0.02 0.90 5.49 84.86 0.47 1.37 16 21 N -0.91 -57.16 13.22 21.65 0.29 -56.87 16 22 Si 0.99 44.86 29.55 68.60 2.03 46.89 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.04 1.31 7.17 -2.38 -0.02 1.30 16 28 H 0.05 1.77 5.48 -2.39 -0.01 1.76 16 29 H 0.06 1.05 7.77 -2.39 -0.02 1.03 16 30 H 0.09 1.97 7.93 -2.39 -0.02 1.95 16 31 H 0.09 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.17 3.20 7.84 -2.91 -0.02 3.18 16 33 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 34 H 0.08 1.48 7.86 -2.39 -0.02 1.46 16 35 H 0.09 0.78 7.80 -2.39 -0.02 0.76 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 0.75 8.14 -2.39 -0.02 0.74 16 39 H 0.07 1.39 7.48 -2.39 -0.02 1.37 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.09 3.49 7.85 -2.39 -0.02 3.47 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -75.70 370.65 3.64 -72.06 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.99 Total: 15.92 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 5.97 Total: -9.48 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -4.07 Total: -91.98 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.03 Total: -21.07 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.74 kcal Atomic # 17 Polarization: -3.52 SS G_CDS: -0.08 Total: -3.60 kcal Total: -75.70 3.64 -72.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328708282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.632 kcal (2) G-P(sol) polarization free energy of solvation -75.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds