Wall clock time and date at job start Tue Mar 31 2020 16:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35492 * 126.98350 * 2 1 4 4 N 1.30521 * 107.30725 * 179.84081 * 3 2 1 5 5 N 1.28594 * 109.67257 * 0.43601 * 4 3 2 6 6 C 1.30517 * 109.67231 * 359.72368 * 5 4 3 7 7 C 1.50707 * 126.34670 * 180.02562 * 6 5 4 8 8 H 1.09001 * 110.88382 * 177.53141 * 7 6 5 9 9 C 1.55162 * 111.00175 * 53.61225 * 7 6 5 10 10 C 1.54318 * 102.93956 * 206.42449 * 9 7 6 11 11 N 1.47026 * 107.27672 * 22.19341 * 10 9 7 12 12 C 1.34775 * 125.65240 * 181.09862 * 11 10 9 13 13 O 1.21759 * 119.99824 * 179.97438 * 12 11 10 14 14 C 1.46236 * 119.99900 * 359.95449 * 12 11 10 15 15 S 1.75671 * 125.22726 * 359.69583 * 14 12 11 16 16 C 1.75473 * 92.08852 * 179.97438 * 15 14 12 17 17 C 1.32762 * 111.36612 * 0.32574 * 16 15 14 18 18 C 1.39545 * 125.22880 * 180.02562 * 14 12 11 19 19 C 1.40542 * 123.71216 * 359.97438 * 18 14 12 20 20 H 1.08001 * 119.99751 * 23.51490 * 19 18 14 21 21 C 1.40299 * 119.99786 * 203.51367 * 19 18 14 22 22 N 1.30639 * 120.00603 * 9.82519 * 21 19 18 23 23 Si 1.86810 * 120.00021 * 189.83222 * 21 19 18 24 24 H 1.48500 * 109.46605 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47278 * 119.99564 * 23 21 19 26 26 H 1.48492 * 109.47041 * 239.99817 * 23 21 19 27 27 C 1.47430 * 108.69578 * 1.05553 * 11 10 9 28 28 H 1.09003 * 109.46715 * 269.69109 * 1 2 3 29 29 H 1.09002 * 109.46817 * 29.68455 * 1 2 3 30 30 H 1.08996 * 109.47372 * 149.68951 * 1 2 3 31 31 H 1.08002 * 126.34411 * 359.97367 * 3 2 1 32 32 H 1.09002 * 110.71822 * 324.78213 * 9 7 6 33 33 H 1.08993 * 110.72171 * 88.06028 * 9 7 6 34 34 H 1.08998 * 109.88591 * 262.77269 * 10 9 7 35 35 H 1.09006 * 110.01202 * 141.68182 * 10 9 7 36 36 H 1.08009 * 124.31725 * 180.08417 * 16 15 14 37 37 H 1.08000 * 122.79015 * 179.78132 * 17 16 15 38 38 H 0.96993 * 120.00370 * 179.97438 * 22 21 19 39 39 H 1.09001 * 110.36310 * 217.03319 * 27 11 10 40 40 H 1.09003 * 110.45563 * 94.76344 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 0.0035 5 7 3.5090 -0.6431 -0.0036 6 6 2.2800 -1.0824 -0.0060 7 6 1.8475 -2.5261 -0.0133 8 1 0.7614 -2.6065 0.0300 9 6 2.5110 -3.3113 1.1489 10 6 2.5399 -4.7591 0.6156 11 7 2.4608 -4.6859 -0.8507 12 6 2.4373 -5.7404 -1.6897 13 8 2.3697 -5.5604 -2.8920 14 6 2.4936 -7.1008 -1.1561 15 16 2.6009 -7.5175 0.5471 16 6 2.6110 -9.2359 0.1920 17 6 2.5455 -9.4601 -1.1149 18 6 2.4769 -8.2672 -1.9219 19 6 2.4020 -8.2780 -3.3253 20 1 2.7277 -7.4169 -3.8900 21 6 1.9042 -9.4073 -3.9925 22 7 1.3343 -10.3680 -3.3151 23 14 2.0565 -9.5374 -5.8499 24 1 2.7358 -8.3266 -6.3767 25 1 2.8512 -10.7425 -6.1982 26 1 0.7031 -9.6462 -6.4510 27 6 2.4104 -3.2680 -1.2511 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3633 0.8928 -0.5089 30 1 -0.3634 -0.8871 -0.5186 31 1 1.9702 2.1169 -0.0004 32 1 3.5221 -2.9476 1.3322 33 1 1.9064 -3.2454 2.0534 34 1 1.6871 -5.3149 1.0055 35 1 3.4678 -5.2477 0.9128 36 1 2.6676 -10.0121 0.9409 37 1 2.5432 -10.4536 -1.5385 38 1 0.9898 -11.1485 -3.7765 39 1 1.7461 -3.1385 -2.1056 40 1 3.4097 -2.9038 -1.4899 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363280802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:18 Heat of formation + Delta-G solvation = 75.027107 kcal Electronic energy + Delta-G solvation = -25539.919752 eV Core-core repulsion = 21868.669355 eV Total energy + Delta-G solvation = -3671.250397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.27286 -39.13148 -36.96659 -35.67738 -35.23680 -33.04552 -32.41322 -29.82359 -29.25947 -28.36572 -27.87635 -26.21596 -23.77367 -22.67982 -22.11562 -21.71825 -20.11761 -19.56139 -18.60590 -17.48890 -17.06222 -16.45076 -16.05607 -15.86905 -15.31547 -15.20169 -14.69751 -13.97423 -13.94794 -13.76330 -13.59748 -13.33566 -13.09978 -12.98325 -12.43584 -12.12666 -11.94299 -11.82714 -11.61366 -11.47978 -11.45352 -11.37198 -11.03837 -11.01971 -10.81052 -10.39766 -10.38113 -10.30219 -10.10062 -9.59745 -9.30380 -9.13500 -8.47320 -7.92712 -7.47477 -7.09628 -7.04027 -4.51690 1.61191 2.17274 2.24038 2.76270 2.95212 2.99951 3.10387 3.19010 3.64877 3.69895 3.80161 3.86491 4.16225 4.26751 4.36053 4.40791 4.57324 4.67302 4.68457 4.88423 5.01283 5.21733 5.28678 5.39024 5.47403 5.68540 5.80597 5.90248 5.97068 6.08354 6.12326 6.23485 6.30330 6.42146 6.62925 6.83062 7.06980 7.19672 7.26519 7.51210 7.73023 8.33409 8.43337 8.61083 8.62003 8.76664 9.52908 9.86679 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003151 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.116502 B = 8884.889125 C = 9941.242154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.478 5.478 3 C 0.143 3.857 4 N -0.297 5.297 5 N -0.285 5.285 6 C 0.195 3.805 7 C -0.022 4.022 8 H 0.099 0.901 9 C -0.112 4.112 10 C 0.103 3.897 11 N -0.634 5.634 12 C 0.617 3.383 13 O -0.560 6.560 14 C -0.428 4.428 15 S -0.033 6.033 16 C -0.221 4.221 17 C -0.100 4.100 18 C 0.142 3.858 19 C -0.377 4.377 20 H 0.112 0.888 21 C 0.068 3.932 22 N -0.777 5.777 23 Si 0.923 3.077 24 H -0.253 1.253 25 H -0.269 1.269 26 H -0.270 1.270 27 C 0.132 3.868 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.217 0.783 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.287 0.713 39 H 0.073 0.927 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 13.160 7.731 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.168 5.168 3 C -0.145 4.145 4 N -0.136 5.136 5 N -0.125 5.125 6 C -0.072 4.072 7 C -0.043 4.043 8 H 0.117 0.883 9 C -0.151 4.151 10 C -0.022 4.022 11 N -0.371 5.371 12 C 0.417 3.583 13 O -0.443 6.443 14 C -0.546 4.546 15 S 0.223 5.777 16 C -0.355 4.355 17 C -0.132 4.132 18 C 0.131 3.869 19 C -0.408 4.408 20 H 0.129 0.871 21 C -0.154 4.154 22 N -0.402 5.402 23 Si 0.746 3.254 24 H -0.176 1.176 25 H -0.194 1.194 26 H -0.195 1.195 27 C 0.007 3.993 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.234 0.766 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.856 13.765 8.328 16.544 hybrid contribution -1.728 -0.899 -1.763 2.628 sum -5.584 12.867 6.565 15.486 Atomic orbital electron populations 1.22151 0.75325 1.05530 1.04300 1.46217 1.09254 1.06778 1.54597 1.26407 0.87353 0.94824 1.05878 1.74278 1.18051 1.03411 1.17858 1.74276 1.16867 1.02900 1.18460 1.24554 0.87265 0.91566 1.03849 1.20785 1.00653 0.84070 0.98831 0.88321 1.22682 1.02193 0.93895 0.96335 1.21892 1.03080 0.95500 0.81708 1.48177 1.78168 1.04677 1.06066 1.16556 0.75287 0.82010 0.84424 1.90671 1.54045 1.85123 1.14451 1.22495 1.45353 0.94376 0.92412 1.82947 1.84468 1.00107 1.10201 1.25232 1.11292 0.99356 0.99585 1.21685 0.99275 1.00392 0.91881 1.17916 0.87257 0.88298 0.93445 1.20084 1.29348 0.99977 0.91425 0.87064 1.26375 0.92357 0.94104 1.02577 1.69682 1.24616 1.06776 1.39111 0.85983 0.79232 0.79783 0.80368 1.17570 1.19449 1.19534 1.21853 1.01118 0.81696 0.94641 0.89792 0.88854 0.88773 0.76629 0.89337 0.90099 0.90757 0.90571 0.84799 0.84001 0.90175 0.90819 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 10.91 59.85 0.65 0.98 16 2 N -0.48 -4.49 3.15 -122.69 -0.39 -4.87 16 3 C 0.14 1.40 12.74 -89.95 -1.15 0.25 16 4 N -0.30 -4.29 12.21 29.69 0.36 -3.93 16 5 N -0.29 -4.47 11.93 32.80 0.39 -4.08 16 6 C 0.20 2.48 6.69 -154.98 -1.04 1.45 16 7 C -0.02 -0.27 3.40 -89.62 -0.30 -0.58 16 8 H 0.10 1.02 7.04 -51.93 -0.37 0.66 16 9 C -0.11 -1.40 6.41 -24.90 -0.16 -1.56 16 10 C 0.10 1.66 5.17 -3.07 -0.02 1.65 16 11 N -0.63 -12.55 3.33 -172.21 -0.57 -13.12 16 12 C 0.62 15.36 7.80 -13.05 -0.10 15.26 16 13 O -0.56 -15.57 14.70 5.14 0.08 -15.50 16 14 C -0.43 -10.84 6.44 -35.88 -0.23 -11.07 16 15 S -0.03 -0.69 18.49 -107.50 -1.99 -2.68 16 16 C -0.22 -4.81 11.07 28.86 0.32 -4.49 16 17 C -0.10 -2.45 9.05 -39.12 -0.35 -2.80 16 18 C 0.14 3.80 5.68 -106.21 -0.60 3.20 16 19 C -0.38 -10.23 8.51 -37.94 -0.32 -10.56 16 20 H 0.11 3.18 6.04 -52.49 -0.32 2.87 16 21 C 0.07 1.65 5.39 -17.28 -0.09 1.56 16 22 N -0.78 -18.79 10.81 55.57 0.60 -18.19 16 23 Si 0.92 18.59 29.57 -169.99 -5.03 13.56 16 24 H -0.25 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 26 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 27 C 0.13 2.20 6.37 -2.53 -0.02 2.19 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.44 7.26 -51.93 -0.38 0.06 16 31 H 0.22 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.09 1.18 7.86 -51.93 -0.41 0.77 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.21 6.82 -51.93 -0.35 0.85 16 35 H 0.08 1.29 6.94 -51.93 -0.36 0.93 16 36 H 0.13 2.48 8.06 -52.48 -0.42 2.06 16 37 H 0.14 3.45 6.40 -52.49 -0.34 3.12 16 38 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 39 H 0.07 1.27 8.04 -51.93 -0.42 0.86 16 40 H 0.07 1.27 7.96 -51.93 -0.41 0.85 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -33.80 344.34 -9.36 -43.16 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.60 Total: 4.98 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -3.41 Total: -4.53 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.40 Total: -44.19 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.08 Total: -15.50 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -1.99 Total: -2.68 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.80 -9.36 -43.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363280802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.192 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds