Wall clock time and date at job start Tue Mar 31 2020 16:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35492 * 126.98350 * 2 1 4 4 N 1.30521 * 107.30725 * 179.84081 * 3 2 1 5 5 N 1.28594 * 109.67257 * 0.43601 * 4 3 2 6 6 C 1.30517 * 109.67231 * 359.72368 * 5 4 3 7 7 C 1.50707 * 126.34670 * 180.02562 * 6 5 4 8 8 H 1.09001 * 110.88382 * 177.53141 * 7 6 5 9 9 C 1.55162 * 111.00175 * 53.61225 * 7 6 5 10 10 C 1.54318 * 102.93956 * 206.42449 * 9 7 6 11 11 N 1.47026 * 107.27672 * 22.19341 * 10 9 7 12 12 C 1.34775 * 125.65240 * 181.09862 * 11 10 9 13 13 O 1.21759 * 119.99824 * 179.97438 * 12 11 10 14 14 C 1.46236 * 119.99900 * 359.95449 * 12 11 10 15 15 S 1.75671 * 125.22726 * 359.69583 * 14 12 11 16 16 C 1.75473 * 92.08852 * 179.97438 * 15 14 12 17 17 C 1.32762 * 111.36612 * 0.32574 * 16 15 14 18 18 C 1.39545 * 125.22880 * 180.02562 * 14 12 11 19 19 C 1.40542 * 123.71216 * 359.97438 * 18 14 12 20 20 H 1.08001 * 119.99751 * 23.51490 * 19 18 14 21 21 C 1.40299 * 119.99786 * 203.51367 * 19 18 14 22 22 N 1.30639 * 120.00603 * 9.82519 * 21 19 18 23 23 Si 1.86810 * 120.00021 * 189.83222 * 21 19 18 24 24 H 1.48500 * 109.46605 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47278 * 119.99564 * 23 21 19 26 26 H 1.48492 * 109.47041 * 239.99817 * 23 21 19 27 27 C 1.47430 * 108.69578 * 1.05553 * 11 10 9 28 28 H 1.09003 * 109.46715 * 269.69109 * 1 2 3 29 29 H 1.09002 * 109.46817 * 29.68455 * 1 2 3 30 30 H 1.08996 * 109.47372 * 149.68951 * 1 2 3 31 31 H 1.08002 * 126.34411 * 359.97367 * 3 2 1 32 32 H 1.09002 * 110.71822 * 324.78213 * 9 7 6 33 33 H 1.08993 * 110.72171 * 88.06028 * 9 7 6 34 34 H 1.08998 * 109.88591 * 262.77269 * 10 9 7 35 35 H 1.09006 * 110.01202 * 141.68182 * 10 9 7 36 36 H 1.08009 * 124.31725 * 180.08417 * 16 15 14 37 37 H 1.08000 * 122.79015 * 179.78132 * 17 16 15 38 38 H 0.96993 * 120.00370 * 179.97438 * 22 21 19 39 39 H 1.09001 * 110.36310 * 217.03319 * 27 11 10 40 40 H 1.09003 * 110.45563 * 94.76344 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 0.0035 5 7 3.5090 -0.6431 -0.0036 6 6 2.2800 -1.0824 -0.0060 7 6 1.8475 -2.5261 -0.0133 8 1 0.7614 -2.6065 0.0300 9 6 2.5110 -3.3113 1.1489 10 6 2.5399 -4.7591 0.6156 11 7 2.4608 -4.6859 -0.8507 12 6 2.4373 -5.7404 -1.6897 13 8 2.3697 -5.5604 -2.8920 14 6 2.4936 -7.1008 -1.1561 15 16 2.6009 -7.5175 0.5471 16 6 2.6110 -9.2359 0.1920 17 6 2.5455 -9.4601 -1.1149 18 6 2.4769 -8.2672 -1.9219 19 6 2.4020 -8.2780 -3.3253 20 1 2.7277 -7.4169 -3.8900 21 6 1.9042 -9.4073 -3.9925 22 7 1.3343 -10.3680 -3.3151 23 14 2.0565 -9.5374 -5.8499 24 1 2.7358 -8.3266 -6.3767 25 1 2.8512 -10.7425 -6.1982 26 1 0.7031 -9.6462 -6.4510 27 6 2.4104 -3.2680 -1.2511 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3633 0.8928 -0.5089 30 1 -0.3634 -0.8871 -0.5186 31 1 1.9702 2.1169 -0.0004 32 1 3.5221 -2.9476 1.3322 33 1 1.9064 -3.2454 2.0534 34 1 1.6871 -5.3149 1.0055 35 1 3.4678 -5.2477 0.9128 36 1 2.6676 -10.0121 0.9409 37 1 2.5432 -10.4536 -1.5385 38 1 0.9898 -11.1485 -3.7765 39 1 1.7461 -3.1385 -2.1056 40 1 3.4097 -2.9038 -1.4899 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363280802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:18 Heat of formation + Delta-G solvation = 54.535915 kcal Electronic energy + Delta-G solvation = -25540.808317 eV Core-core repulsion = 21868.669355 eV Total energy + Delta-G solvation = -3672.138962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.13221 -40.70595 -38.65647 -37.49006 -35.98851 -34.90116 -33.72918 -31.03503 -30.94813 -29.75465 -28.46647 -27.93096 -25.27844 -23.75555 -23.39697 -23.04347 -21.39365 -21.00299 -20.45487 -18.75624 -18.25510 -17.81911 -17.24102 -17.18895 -16.93810 -16.43668 -16.10859 -15.51636 -15.35497 -15.04075 -14.68986 -14.40121 -14.24050 -14.18091 -13.88129 -13.69429 -13.54608 -13.29746 -13.14775 -13.06197 -12.77545 -12.69095 -12.59265 -12.50951 -12.02188 -11.97338 -11.91491 -11.33612 -11.29217 -11.08753 -10.94650 -10.43876 -10.22201 -9.63766 -9.30348 -8.88463 -8.85713 -6.43898 0.31834 0.79650 1.31550 1.33476 1.44221 1.48576 1.55211 1.79980 1.84915 1.96818 2.17335 2.24550 2.49147 3.14918 3.30659 3.44702 3.56840 3.75118 3.88849 3.95639 4.21991 4.25409 4.35257 4.39631 4.42424 4.54405 4.68421 4.71699 4.78370 4.83005 4.90403 4.96781 4.99891 5.13482 5.20225 5.28472 5.39758 5.53316 5.65250 5.87470 5.95382 6.37569 6.56709 6.71145 6.89520 7.64403 7.73251 8.07643 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003151 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.116502 B = 8884.889125 C = 9941.242154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.470 5.470 3 C 0.166 3.834 4 N -0.351 5.351 5 N -0.331 5.331 6 C 0.186 3.814 7 C -0.002 4.002 8 H 0.129 0.871 9 C -0.097 4.097 10 C 0.098 3.902 11 N -0.633 5.633 12 C 0.605 3.395 13 O -0.605 6.605 14 C -0.466 4.466 15 S 0.041 5.959 16 C -0.210 4.210 17 C -0.132 4.132 18 C 0.114 3.886 19 C -0.420 4.420 20 H 0.081 0.919 21 C 0.037 3.963 22 N -0.792 5.792 23 Si 0.988 3.012 24 H -0.273 1.273 25 H -0.247 1.247 26 H -0.257 1.257 27 C 0.129 3.871 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.265 0.735 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.173 0.827 37 H 0.137 0.863 38 H 0.301 0.699 39 H 0.062 0.938 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 14.202 9.800 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.160 5.160 3 C -0.122 4.122 4 N -0.190 5.190 5 N -0.171 5.171 6 C -0.084 4.084 7 C -0.024 4.024 8 H 0.147 0.853 9 C -0.136 4.136 10 C -0.025 4.025 11 N -0.368 5.368 12 C 0.404 3.596 13 O -0.492 6.492 14 C -0.584 4.584 15 S 0.298 5.702 16 C -0.344 4.344 17 C -0.164 4.164 18 C 0.102 3.898 19 C -0.451 4.451 20 H 0.099 0.901 21 C -0.183 4.183 22 N -0.417 5.417 23 Si 0.807 3.193 24 H -0.197 1.197 25 H -0.171 1.171 26 H -0.181 1.181 27 C 0.004 3.996 28 H 0.124 0.876 29 H 0.140 0.860 30 H 0.113 0.887 31 H 0.281 0.719 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.190 0.810 37 H 0.154 0.846 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.764 14.828 10.473 19.046 hybrid contribution -1.172 -1.069 -2.282 2.779 sum -6.936 13.759 8.191 17.450 Atomic orbital electron populations 1.22576 0.72258 1.07065 1.06198 1.46447 1.10911 1.05507 1.53151 1.27280 0.86150 0.96534 1.02279 1.74174 1.20924 1.03157 1.20706 1.74163 1.18977 1.03977 1.19977 1.24336 0.87326 0.92129 1.04599 1.20625 1.01996 0.83780 0.95968 0.85328 1.22635 1.02690 0.90767 0.97528 1.22103 1.02752 0.98332 0.79349 1.48106 1.76288 1.04890 1.07473 1.16773 0.75217 0.83228 0.84395 1.90624 1.55992 1.86064 1.16495 1.22990 1.45153 0.94602 0.95675 1.82487 1.83119 0.98659 1.05937 1.25777 1.07930 1.01227 0.99445 1.21549 1.02633 0.99459 0.92799 1.18361 0.87493 0.89865 0.94036 1.20031 1.32288 1.00563 0.92189 0.90134 1.27018 0.91519 0.93192 1.06606 1.69656 1.24136 1.07120 1.40788 0.85072 0.79762 0.79494 0.74933 1.19697 1.17100 1.18101 1.21914 1.00246 0.80588 0.96810 0.87624 0.86008 0.88738 0.71942 0.90200 0.86106 0.90166 0.91429 0.81007 0.84572 0.88801 0.91952 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 10.91 127.77 1.39 1.70 16 2 N -0.47 -7.43 3.15 -542.07 -1.71 -9.14 16 3 C 0.17 2.79 12.74 180.11 2.30 5.08 16 4 N -0.35 -9.87 12.21 -59.99 -0.73 -10.60 16 5 N -0.33 -10.34 11.93 -50.15 -0.60 -10.94 16 6 C 0.19 4.45 6.69 137.98 0.92 5.37 16 7 C 0.00 -0.05 3.40 -10.15 -0.03 -0.09 16 8 H 0.13 2.25 7.04 -2.39 -0.02 2.24 16 9 C -0.10 -2.22 6.41 31.78 0.20 -2.02 16 10 C 0.10 3.07 5.17 86.73 0.45 3.51 16 11 N -0.63 -25.63 3.33 -816.95 -2.72 -28.35 16 12 C 0.60 31.55 7.80 86.32 0.67 32.22 16 13 O -0.61 -36.09 14.70 -4.54 -0.07 -36.16 16 14 C -0.47 -24.34 6.44 24.67 0.16 -24.18 16 15 S 0.04 1.68 18.49 -56.49 -1.04 0.63 16 16 C -0.21 -8.83 11.07 66.64 0.74 -8.10 16 17 C -0.13 -6.55 9.05 22.60 0.20 -6.34 16 18 C 0.11 6.36 5.68 -20.89 -0.12 6.24 16 19 C -0.42 -24.18 8.51 23.33 0.20 -23.98 16 20 H 0.08 5.02 6.04 -2.91 -0.02 5.00 16 21 C 0.04 1.85 5.39 85.37 0.46 2.31 16 22 N -0.79 -38.95 10.81 21.89 0.24 -38.71 16 23 Si 0.99 39.20 29.57 68.60 2.03 41.23 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 25 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 26 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 27 C 0.13 4.43 6.37 86.85 0.55 4.98 16 28 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.09 0.53 7.26 -2.39 -0.02 0.52 16 31 H 0.26 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.08 2.02 7.86 -2.39 -0.02 2.00 16 33 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 2.43 6.82 -2.39 -0.02 2.41 16 35 H 0.07 2.24 6.94 -2.38 -0.02 2.22 16 36 H 0.17 5.80 8.06 -2.91 -0.02 5.77 16 37 H 0.14 6.77 6.40 -2.91 -0.02 6.76 16 38 H 0.30 12.92 8.29 -92.71 -0.77 12.15 16 39 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 40 H 0.05 1.94 7.96 -2.39 -0.02 1.92 16 Total: -1.00 -81.25 344.34 4.58 -76.67 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.09 Total: 18.66 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 8.10 Total: -3.29 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -5.52 Total: -97.74 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.07 Total: -36.16 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.04 Total: 0.63 kcal Total: -81.25 4.58 -76.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363280802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.202 kcal (2) G-P(sol) polarization free energy of solvation -81.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds