Wall clock time and date at job start Tue Mar 31 2020 16:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00224 * 2 1 4 4 C 1.53000 * 109.46991 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47136 * 65.00335 * 4 3 2 6 6 C 1.36910 * 119.99605 * 269.99768 * 5 4 3 7 7 H 1.08002 * 119.99741 * 139.08352 * 6 5 4 8 8 C 1.39020 * 119.99974 * 319.07688 * 6 5 4 9 9 N 1.31385 * 119.99456 * 165.43245 * 8 6 5 10 10 Si 1.86793 * 120.00061 * 345.43398 * 8 6 5 11 11 H 1.48506 * 109.46978 * 95.03411 * 10 8 6 12 12 H 1.48498 * 109.46998 * 215.03507 * 10 8 6 13 13 H 1.48503 * 109.47636 * 335.03624 * 10 8 6 14 14 C 1.34775 * 120.00199 * 89.99646 * 5 4 3 15 15 O 1.21644 * 119.99970 * 4.48609 * 14 5 4 16 16 C 1.47328 * 119.99872 * 184.48855 * 14 5 4 17 17 C 1.39788 * 120.21198 * 313.62645 * 16 14 5 18 18 C 1.37740 * 119.91602 * 180.02562 * 17 16 14 19 19 C 1.38625 * 120.36071 * 0.02562 * 18 17 16 20 20 C 1.37980 * 120.43167 * 0.25057 * 19 18 17 21 21 C 1.50696 * 119.96332 * 179.72672 * 20 19 18 22 22 F 1.39901 * 109.47144 * 0.02562 * 21 20 19 23 23 F 1.39901 * 109.46904 * 119.99861 * 21 20 19 24 24 F 1.39899 * 109.47333 * 240.00158 * 21 20 19 25 25 C 1.38936 * 120.06759 * 359.49417 * 20 19 18 26 26 N 1.38878 * 120.17469 * 180.25715 * 25 20 19 27 27 H 1.09004 * 109.47362 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47632 * 300.00790 * 1 2 3 29 29 H 1.09007 * 109.46790 * 60.00185 * 1 2 3 30 30 H 1.09001 * 109.47231 * 59.99834 * 3 2 1 31 31 H 1.08994 * 109.47202 * 299.99421 * 3 2 1 32 32 H 1.08998 * 109.47387 * 305.00128 * 4 3 2 33 33 H 1.09005 * 109.47212 * 184.99727 * 4 3 2 34 34 H 0.96998 * 119.99536 * 179.97438 * 9 8 6 35 35 H 1.07992 * 120.04523 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.81652 * 179.97438 * 18 17 16 37 37 H 1.07996 * 119.78442 * 179.97438 * 19 18 17 38 38 H 0.97003 * 120.00203 * 185.19436 * 26 25 20 39 39 H 0.97004 * 120.00480 * 5.19150 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0977 -0.7973 -1.3344 7 1 3.7726 -1.3147 -2.2250 8 6 4.6391 -1.5134 -0.2730 9 7 4.4985 -2.8187 -0.2216 10 14 5.5665 -0.6199 1.0801 11 1 4.6431 -0.3340 2.2075 12 1 6.6845 -1.4716 1.5596 13 1 6.1091 0.6564 0.5489 14 6 4.2633 1.3328 -2.3200 15 8 4.2348 2.5450 -2.2226 16 6 4.6112 0.7052 -3.6067 17 6 5.5305 -0.3470 -3.6504 18 6 5.8516 -0.9290 -4.8568 19 6 5.2684 -0.4768 -6.0302 20 6 4.3635 0.5646 -6.0048 21 6 3.7404 1.0518 -7.2875 22 9 4.2312 0.2990 -8.3597 23 9 2.3507 0.9080 -7.2148 24 9 4.0604 2.4002 -7.4786 25 6 4.0225 1.1611 -4.7972 26 7 3.1079 2.2058 -4.7684 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8507 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 4.8766 -3.3184 0.5188 35 1 5.9889 -0.7026 -2.7396 36 1 6.5624 -1.7415 -4.8887 37 1 5.5273 -0.9396 -6.9710 38 1 2.9281 2.6702 -3.9359 39 1 2.6489 2.4713 -5.5807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001450854513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:31 Heat of formation + Delta-G solvation = -186.736139 kcal Electronic energy + Delta-G solvation = -30000.194008 eV Core-core repulsion = 25300.690342 eV Total energy + Delta-G solvation = -4699.503666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.02832 -47.54574 -47.46085 -39.88693 -38.21907 -37.01464 -35.16459 -34.11873 -32.06806 -31.69778 -29.61080 -28.47706 -25.94055 -25.56796 -24.97397 -23.45823 -22.06264 -21.48076 -19.48123 -18.41728 -18.32905 -18.18701 -17.08763 -16.61108 -16.47049 -16.16588 -15.81725 -15.41846 -14.83538 -14.59009 -14.45105 -14.39917 -14.27907 -13.93650 -13.86074 -13.83366 -13.64147 -13.59881 -13.35785 -12.83958 -12.79876 -12.49399 -12.37047 -11.93153 -11.75101 -11.63781 -11.30353 -10.96088 -10.89949 -10.85717 -10.46632 -10.14894 -9.93588 -9.31228 -9.16236 -8.79320 -8.59467 -7.89429 -7.33805 -6.44602 -4.08950 1.38347 1.84370 2.87466 3.02442 3.17814 3.21858 3.46560 3.89213 3.99507 4.10120 4.18348 4.20171 4.29862 4.41917 4.67002 4.96578 5.19667 5.51023 5.52433 5.56386 5.68764 5.73714 5.74710 5.82027 5.85227 5.96288 6.00307 6.11463 6.23878 6.31958 6.43902 6.73325 6.95317 7.16983 7.25441 7.62368 7.71990 7.92522 8.05893 8.23871 8.87421 9.24632 9.53504 10.65014 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.004587 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.097905 B = 6103.405791 C = 6857.007952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.056 3.944 4 C 0.098 3.902 5 N -0.442 5.442 6 C -0.331 4.331 7 H 0.108 0.892 8 C 0.073 3.927 9 N -0.856 5.856 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.525 3.475 15 O -0.603 6.603 16 C -0.175 4.175 17 C 0.025 3.975 18 C -0.194 4.194 19 C -0.019 4.019 20 C -0.291 4.291 21 C 0.516 3.484 22 F -0.180 7.180 23 F -0.184 7.184 24 F -0.183 7.183 25 C 0.302 3.698 26 N -0.857 5.857 27 H 0.081 0.919 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.274 0.726 35 H 0.150 0.850 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.414 0.586 39 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 4.945 -6.996 8.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.022 4.022 4 C -0.025 4.025 5 N -0.160 5.160 6 C -0.458 4.458 7 H 0.125 0.875 8 C -0.135 4.135 9 N -0.491 5.491 10 Si 0.702 3.298 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.186 1.186 14 C 0.316 3.684 15 O -0.490 6.490 16 C -0.182 4.182 17 C 0.006 3.994 18 C -0.214 4.214 19 C -0.038 4.038 20 C -0.297 4.297 21 C 0.462 3.538 22 F -0.162 7.162 23 F -0.165 7.165 24 F -0.164 7.164 25 C 0.191 3.809 26 N -0.396 5.396 27 H 0.100 0.900 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.168 0.832 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.248 0.752 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.111 5.177 -6.808 8.809 hybrid contribution -0.327 0.696 0.639 0.999 sum -2.438 5.872 -6.169 8.859 Atomic orbital electron populations 1.22665 0.82923 1.02203 0.98721 1.88227 1.17755 1.26424 1.94997 1.22851 0.94746 0.85380 0.99254 1.21795 0.92323 0.99188 0.89150 1.43527 1.56204 1.07259 1.09005 1.19027 1.41701 0.78943 1.06112 0.87506 1.25262 0.95787 0.95094 0.97318 1.69680 1.41459 1.06324 1.31665 0.86990 0.79899 0.80446 0.82492 1.20072 1.21500 1.18633 1.17945 0.79956 0.85853 0.84665 1.90609 1.58957 1.13966 1.85508 1.19227 1.05083 1.02376 0.91560 1.21645 0.90658 0.88545 0.98588 1.20829 1.05014 1.03887 0.91684 1.20739 0.91785 0.92042 0.99253 1.19120 1.12044 1.08722 0.89843 1.18230 0.75951 0.74922 0.84696 1.93123 1.87698 1.76360 1.58975 1.93183 1.31379 1.95431 1.96507 1.93191 1.92550 1.34745 1.95910 1.17171 0.86656 0.85778 0.91285 1.42723 1.45382 1.36422 1.15120 0.90001 0.95145 0.94924 0.93753 0.93523 0.90859 0.89349 0.91518 0.83215 0.85280 0.85242 0.75224 0.77971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.33 10.18 -35.23 -0.36 -7.69 16 3 C 0.06 1.04 6.28 37.16 0.23 1.28 16 4 C 0.10 2.07 4.54 -4.04 -0.02 2.05 16 5 N -0.44 -10.10 2.13 -116.06 -0.25 -10.35 16 6 C -0.33 -8.14 6.61 -14.99 -0.10 -8.24 16 7 H 0.11 2.85 6.95 -52.49 -0.36 2.49 16 8 C 0.07 1.84 5.40 -17.45 -0.09 1.74 16 9 N -0.86 -22.73 13.96 55.50 0.77 -21.96 16 10 Si 0.87 19.64 24.72 -169.99 -4.20 15.44 16 11 H -0.27 -6.04 6.79 56.52 0.38 -5.66 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.26 -5.88 7.01 56.52 0.40 -5.49 16 14 C 0.53 11.68 6.78 -12.56 -0.09 11.59 16 15 O -0.60 -13.86 14.82 5.24 0.08 -13.78 16 16 C -0.17 -3.54 5.15 -104.80 -0.54 -4.08 16 17 C 0.03 0.47 7.92 -39.18 -0.31 0.16 16 18 C -0.19 -3.08 10.02 -39.62 -0.40 -3.48 16 19 C -0.02 -0.29 9.42 -39.53 -0.37 -0.66 16 20 C -0.29 -4.74 5.38 -104.46 -0.56 -5.31 16 21 C 0.52 7.59 2.80 36.00 0.10 7.69 16 22 F -0.18 -2.49 15.96 2.25 0.04 -2.45 16 23 F -0.18 -2.70 16.13 2.25 0.04 -2.67 16 24 F -0.18 -2.66 16.37 2.25 0.04 -2.62 16 25 C 0.30 5.51 6.64 -83.59 -0.55 4.96 16 26 N -0.86 -14.20 8.67 32.56 0.28 -13.91 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.61 3.12 -51.93 -0.16 1.45 16 33 H 0.09 1.77 7.36 -51.93 -0.38 1.38 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.15 2.99 6.71 -52.49 -0.35 2.63 16 36 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 1.60 7.13 -52.49 -0.37 1.23 16 38 H 0.41 7.23 6.50 -40.82 -0.27 6.96 16 39 H 0.39 5.65 6.27 -40.82 -0.26 5.39 16 LS Contribution 332.92 15.07 5.02 5.02 Total: -1.00 -28.00 332.92 -3.99 -31.99 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -3.85 Total: 13.68 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -1.59 Total: 9.32 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.81 Total: -46.23 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.28 Total: -21.47 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 0.11 Total: -7.74 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.20 Total: 15.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.00 -3.99 -31.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001450854513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.747 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds