Wall clock time and date at job start Tue Mar 31 2020 16:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00224 * 2 1 4 4 C 1.53000 * 109.46991 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47136 * 65.00335 * 4 3 2 6 6 C 1.36910 * 119.99605 * 269.99768 * 5 4 3 7 7 H 1.08002 * 119.99741 * 139.08352 * 6 5 4 8 8 C 1.39020 * 119.99974 * 319.07688 * 6 5 4 9 9 N 1.31385 * 119.99456 * 165.43245 * 8 6 5 10 10 Si 1.86793 * 120.00061 * 345.43398 * 8 6 5 11 11 H 1.48506 * 109.46978 * 95.03411 * 10 8 6 12 12 H 1.48498 * 109.46998 * 215.03507 * 10 8 6 13 13 H 1.48503 * 109.47636 * 335.03624 * 10 8 6 14 14 C 1.34775 * 120.00199 * 89.99646 * 5 4 3 15 15 O 1.21644 * 119.99970 * 4.48609 * 14 5 4 16 16 C 1.47328 * 119.99872 * 184.48855 * 14 5 4 17 17 C 1.39788 * 120.21198 * 313.62645 * 16 14 5 18 18 C 1.37740 * 119.91602 * 180.02562 * 17 16 14 19 19 C 1.38625 * 120.36071 * 0.02562 * 18 17 16 20 20 C 1.37980 * 120.43167 * 0.25057 * 19 18 17 21 21 C 1.50696 * 119.96332 * 179.72672 * 20 19 18 22 22 F 1.39901 * 109.47144 * 0.02562 * 21 20 19 23 23 F 1.39901 * 109.46904 * 119.99861 * 21 20 19 24 24 F 1.39899 * 109.47333 * 240.00158 * 21 20 19 25 25 C 1.38936 * 120.06759 * 359.49417 * 20 19 18 26 26 N 1.38878 * 120.17469 * 180.25715 * 25 20 19 27 27 H 1.09004 * 109.47362 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47632 * 300.00790 * 1 2 3 29 29 H 1.09007 * 109.46790 * 60.00185 * 1 2 3 30 30 H 1.09001 * 109.47231 * 59.99834 * 3 2 1 31 31 H 1.08994 * 109.47202 * 299.99421 * 3 2 1 32 32 H 1.08998 * 109.47387 * 305.00128 * 4 3 2 33 33 H 1.09005 * 109.47212 * 184.99727 * 4 3 2 34 34 H 0.96998 * 119.99536 * 179.97438 * 9 8 6 35 35 H 1.07992 * 120.04523 * 359.97438 * 17 16 14 36 36 H 1.08001 * 119.81652 * 179.97438 * 18 17 16 37 37 H 1.07996 * 119.78442 * 179.97438 * 19 18 17 38 38 H 0.97003 * 120.00203 * 185.19436 * 26 25 20 39 39 H 0.97004 * 120.00480 * 5.19150 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0977 -0.7973 -1.3344 7 1 3.7726 -1.3147 -2.2250 8 6 4.6391 -1.5134 -0.2730 9 7 4.4985 -2.8187 -0.2216 10 14 5.5665 -0.6199 1.0801 11 1 4.6431 -0.3340 2.2075 12 1 6.6845 -1.4716 1.5596 13 1 6.1091 0.6564 0.5489 14 6 4.2633 1.3328 -2.3200 15 8 4.2348 2.5450 -2.2226 16 6 4.6112 0.7052 -3.6067 17 6 5.5305 -0.3470 -3.6504 18 6 5.8516 -0.9290 -4.8568 19 6 5.2684 -0.4768 -6.0302 20 6 4.3635 0.5646 -6.0048 21 6 3.7404 1.0518 -7.2875 22 9 4.2312 0.2990 -8.3597 23 9 2.3507 0.9080 -7.2148 24 9 4.0604 2.4002 -7.4786 25 6 4.0225 1.1611 -4.7972 26 7 3.1079 2.2058 -4.7684 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8507 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 4.8766 -3.3184 0.5188 35 1 5.9889 -0.7026 -2.7396 36 1 6.5624 -1.7415 -4.8887 37 1 5.5273 -0.9396 -6.9710 38 1 2.9281 2.6702 -3.9359 39 1 2.6489 2.4713 -5.5807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001450854513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:31 Heat of formation + Delta-G solvation = -204.647121 kcal Electronic energy + Delta-G solvation = -30000.970687 eV Core-core repulsion = 25300.690342 eV Total energy + Delta-G solvation = -4700.280345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.19441 -48.69028 -48.63435 -41.44811 -39.71911 -38.51720 -36.85961 -35.53581 -33.93547 -33.12355 -31.09801 -29.87821 -27.30052 -26.91717 -26.69775 -24.96422 -23.53808 -22.81414 -21.11927 -19.73660 -19.62418 -19.49644 -18.65058 -18.04730 -17.97769 -17.56758 -17.37909 -16.95084 -16.40769 -16.07206 -15.85821 -15.70688 -15.57529 -15.33340 -15.25949 -15.08400 -14.84451 -14.79382 -14.73706 -14.44801 -14.39510 -14.04375 -13.75554 -13.56499 -13.22624 -13.12549 -12.77484 -12.59826 -12.42382 -12.22614 -11.99024 -11.71591 -11.65394 -11.10295 -10.65045 -10.45650 -10.05268 -9.71699 -8.69575 -8.37757 -6.02777 0.00423 0.47027 1.22812 1.34396 1.42140 1.65421 1.84973 2.23252 2.45266 2.67158 2.73030 2.87257 2.91845 3.04140 3.19074 3.46514 3.85562 4.02543 4.11650 4.18999 4.26316 4.35761 4.47209 4.49287 4.53256 4.56846 4.61172 4.73227 4.82885 4.85899 5.05772 5.38072 5.46077 5.58876 5.81290 6.13151 6.22454 6.30854 6.37686 6.64981 7.00771 7.39885 7.72128 8.75378 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.004587 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.097905 B = 6103.405791 C = 6857.007952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.060 3.940 4 C 0.089 3.911 5 N -0.454 5.454 6 C -0.312 4.312 7 H 0.079 0.921 8 C 0.038 3.962 9 N -0.896 5.896 10 Si 0.921 3.079 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.265 1.265 14 C 0.526 3.474 15 O -0.614 6.614 16 C -0.210 4.210 17 C 0.012 3.988 18 C -0.190 4.190 19 C -0.005 4.005 20 C -0.295 4.295 21 C 0.524 3.476 22 F -0.171 7.171 23 F -0.183 7.183 24 F -0.181 7.181 25 C 0.294 3.706 26 N -0.852 5.852 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.276 0.724 35 H 0.130 0.870 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.410 0.590 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 5.544 -7.999 10.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.018 4.018 4 C -0.033 4.033 5 N -0.172 5.172 6 C -0.440 4.440 7 H 0.096 0.904 8 C -0.166 4.166 9 N -0.534 5.534 10 Si 0.748 3.252 11 H -0.192 1.192 12 H -0.214 1.214 13 H -0.189 1.189 14 C 0.318 3.682 15 O -0.502 6.502 16 C -0.218 4.218 17 C -0.008 4.008 18 C -0.210 4.210 19 C -0.023 4.023 20 C -0.302 4.302 21 C 0.470 3.530 22 F -0.152 7.152 23 F -0.165 7.165 24 F -0.162 7.162 25 C 0.182 3.818 26 N -0.391 5.391 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.242 0.758 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.258 5.798 -7.825 9.997 hybrid contribution -0.325 0.550 0.815 1.035 sum -2.583 6.347 -7.010 9.803 Atomic orbital electron populations 1.22852 0.80540 1.03090 1.00396 1.88155 1.20532 1.27541 1.95341 1.22817 0.93034 0.85164 1.00747 1.21936 0.94339 0.99062 0.87971 1.43590 1.57054 1.06637 1.09931 1.18671 1.40689 0.79641 1.04950 0.90382 1.25692 0.96435 0.95429 0.99047 1.69752 1.43317 1.07482 1.32806 0.86224 0.78957 0.79257 0.80712 1.19206 1.21409 1.18907 1.18305 0.78934 0.85767 0.85204 1.90579 1.59321 1.14398 1.85902 1.19226 1.07156 1.04021 0.91378 1.21580 0.91033 0.88902 0.99256 1.21101 1.05141 1.03988 0.90768 1.21149 0.90033 0.90827 1.00298 1.19364 1.12106 1.08774 0.89926 1.17940 0.75825 0.75004 0.84218 1.93145 1.87569 1.76123 1.58353 1.93189 1.31331 1.95436 1.96500 1.93200 1.92535 1.34607 1.95854 1.17269 0.86905 0.86202 0.91389 1.42668 1.45137 1.35962 1.15367 0.89627 0.92512 0.94077 0.90360 0.93702 0.91809 0.88590 0.91402 0.85185 0.82543 0.81747 0.75786 0.76797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.14 10.18 -148.98 -1.52 -17.66 16 3 C 0.06 2.18 6.28 71.98 0.45 2.64 16 4 C 0.09 3.74 4.54 86.38 0.39 4.13 16 5 N -0.45 -20.99 2.13 -639.34 -1.36 -22.35 16 6 C -0.31 -15.73 6.61 84.09 0.56 -15.17 16 7 H 0.08 4.35 6.95 -2.91 -0.02 4.33 16 8 C 0.04 1.94 5.40 84.95 0.46 2.40 16 9 N -0.90 -48.70 13.96 21.68 0.30 -48.40 16 10 Si 0.92 40.88 24.72 68.60 1.70 42.58 16 11 H -0.27 -11.34 6.79 99.48 0.68 -10.66 16 12 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.26 -11.70 7.01 99.48 0.70 -11.00 16 14 C 0.53 23.68 6.78 86.64 0.59 24.27 16 15 O -0.61 -28.30 14.82 -4.17 -0.06 -28.36 16 16 C -0.21 -8.58 5.15 -19.98 -0.10 -8.68 16 17 C 0.01 0.45 7.92 22.53 0.18 0.63 16 18 C -0.19 -5.73 10.02 22.24 0.22 -5.51 16 19 C 0.00 -0.13 9.42 22.30 0.21 0.08 16 20 C -0.29 -9.04 5.38 -19.76 -0.11 -9.15 16 21 C 0.52 14.10 2.80 71.23 0.20 14.30 16 22 F -0.17 -4.15 15.96 44.97 0.72 -3.43 16 23 F -0.18 -5.00 16.13 44.97 0.73 -4.28 16 24 F -0.18 -4.85 16.37 44.97 0.74 -4.11 16 25 C 0.29 10.52 6.64 38.72 0.26 10.78 16 26 N -0.85 -27.65 8.67 -50.91 -0.44 -28.09 16 27 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 2.77 3.12 -2.39 -0.01 2.77 16 33 H 0.10 3.79 7.36 -2.38 -0.02 3.77 16 34 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 35 H 0.13 5.39 6.71 -2.91 -0.02 5.37 16 36 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.17 3.35 7.13 -2.91 -0.02 3.33 16 38 H 0.41 14.21 6.50 -92.71 -0.60 13.61 16 39 H 0.40 11.11 6.27 -92.71 -0.58 10.53 16 Total: -1.00 -60.54 332.92 5.27 -55.27 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.08 Total: 36.04 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: 4.55 Total: 22.78 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -1.50 Total: -98.84 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -1.58 Total: -46.02 kcal Atomic # 9 Polarization: -14.00 SS G_CDS: 2.18 Total: -11.82 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.70 Total: 42.58 kcal Total: -60.54 5.27 -55.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001450854513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.373 kcal (2) G-P(sol) polarization free energy of solvation -60.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds