Wall clock time and date at job start Tue Mar 31 2020 16:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 119.99979 * 2 1 4 4 H 1.08001 * 119.99886 * 201.82093 * 3 2 1 5 5 C 1.38811 * 120.00140 * 21.81586 * 3 2 1 6 6 N 1.31622 * 119.99947 * 15.24106 * 5 3 2 7 7 Si 1.86801 * 120.00005 * 195.23852 * 5 3 2 8 8 H 1.48499 * 109.47323 * 60.00263 * 7 5 3 9 9 H 1.48500 * 109.47157 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47051 * 299.99899 * 7 5 3 11 11 C 1.46504 * 119.99671 * 179.97438 * 2 1 3 12 12 C 1.50693 * 109.47400 * 273.78013 * 11 2 1 13 13 C 1.38256 * 119.99962 * 357.99173 * 12 11 2 14 14 C 1.38213 * 120.00161 * 180.27620 * 13 12 11 15 15 C 1.38256 * 119.99693 * 359.48671 * 14 13 12 16 16 C 1.38213 * 120.00169 * 0.49341 * 15 14 13 17 17 C 1.38203 * 120.00320 * 178.00943 * 12 11 2 18 18 C 1.50709 * 120.00079 * 359.97438 * 17 12 11 19 19 N 1.46501 * 109.46810 * 75.39315 * 18 17 12 20 20 C 1.34778 * 119.99736 * 180.02562 * 19 18 17 21 21 O 1.21598 * 120.00165 * 0.02562 * 20 19 18 22 22 C 1.47448 * 120.00016 * 179.97438 * 20 19 18 23 23 C 1.37976 * 124.15822 * 179.97438 * 22 20 19 24 24 S 1.72102 * 104.03743 * 179.97438 * 23 22 20 25 25 N 1.56403 * 96.15028 * 359.97438 * 24 23 22 26 26 N 1.27417 * 109.87875 * 359.74722 * 25 24 23 27 27 H 1.08999 * 109.46904 * 273.49787 * 1 2 3 28 28 H 1.09000 * 109.46976 * 33.49912 * 1 2 3 29 29 H 1.09001 * 109.47328 * 153.49592 * 1 2 3 30 30 H 0.96996 * 120.00019 * 179.97438 * 6 5 3 31 31 H 1.09003 * 109.46512 * 153.78386 * 11 2 1 32 32 H 1.08994 * 109.46720 * 33.78535 * 11 2 1 33 33 H 1.08004 * 119.99887 * 359.97438 * 13 12 11 34 34 H 1.07998 * 120.00174 * 179.72071 * 14 13 12 35 35 H 1.08008 * 119.99858 * 180.25033 * 15 14 13 36 36 H 1.07995 * 120.00242 * 179.76805 * 16 15 14 37 37 H 1.08995 * 109.47066 * 195.39545 * 18 17 12 38 38 H 1.08999 * 109.46735 * 315.40058 * 18 17 12 39 39 H 0.97007 * 120.00259 * 0.02562 * 19 18 17 40 40 H 1.08001 * 127.97873 * 359.95940 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1717 1.2194 -0.3477 5 6 1.5302 2.3450 0.4467 6 7 0.4146 2.2693 1.1411 7 14 2.2799 4.0123 0.0625 8 1 2.3588 4.1922 -1.4094 9 1 1.4330 5.0826 0.6478 10 1 3.6441 4.0875 0.6443 11 6 2.1975 -1.2688 0.0006 12 6 2.3675 -1.7501 1.4184 13 6 1.8950 -0.9859 2.4692 14 6 2.0560 -1.4245 3.7699 15 6 2.6802 -2.6326 4.0197 16 6 3.1522 -3.3968 2.9693 17 6 2.9961 -2.9552 1.6685 18 6 3.5111 -3.7884 0.5231 19 7 4.7409 -3.1899 -0.0019 20 6 5.3829 -3.7673 -1.0367 21 8 4.9412 -4.7848 -1.5349 22 6 6.6204 -3.1646 -1.5654 23 6 7.3456 -3.6825 -2.6188 24 16 8.6625 -2.5889 -2.7966 25 7 8.2453 -1.6333 -1.6309 26 7 7.1703 -2.0527 -1.0905 27 1 -0.3633 0.0627 1.0258 28 1 -0.3633 0.8570 -0.5672 29 1 -0.3634 -0.9197 -0.4586 30 1 -0.0181 3.0792 1.4536 31 1 3.1776 -1.1226 -0.4535 32 1 1.6394 -2.0107 -0.5706 33 1 1.4043 -0.0437 2.2739 34 1 1.6909 -0.8254 4.5910 35 1 2.8024 -2.9773 5.0360 36 1 3.6431 -4.3387 3.1646 37 1 3.7199 -4.7990 0.8740 38 1 2.7597 -3.8256 -0.2657 39 1 5.0931 -2.3780 0.3953 40 1 7.1355 -4.5697 -3.1978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484555859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:21 Heat of formation + Delta-G solvation = 92.165910 kcal Electronic energy + Delta-G solvation = -25665.268668 eV Core-core repulsion = 21994.761464 eV Total energy + Delta-G solvation = -3670.507203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.25632 -39.62513 -38.70218 -35.55440 -34.94284 -32.46338 -31.91990 -30.97326 -29.86008 -27.55343 -26.47733 -25.91003 -25.42256 -23.34550 -22.14424 -20.98709 -20.84971 -19.95318 -19.36652 -17.13533 -16.73518 -16.25416 -16.09411 -15.98144 -15.41154 -15.36298 -14.69879 -14.34654 -14.26698 -13.80762 -13.61563 -13.17517 -12.95387 -12.82869 -12.59833 -12.42024 -12.29828 -12.13979 -11.55208 -11.30724 -10.86573 -10.76750 -10.63975 -10.50569 -10.45039 -10.33777 -10.31443 -10.25956 -10.16078 -10.04101 -9.84334 -9.09106 -8.56209 -8.29947 -8.00442 -6.84514 -5.77132 -3.21658 -0.17962 0.66793 1.27261 1.29592 1.73069 2.02240 3.02529 3.15603 3.39307 3.44362 3.46304 3.67016 4.36881 4.47973 4.49456 4.72151 4.94557 5.12434 5.24884 5.33410 5.46113 5.55536 5.60070 5.76016 5.83510 6.03088 6.24763 6.31342 6.38029 6.47249 6.58156 6.73720 6.76612 6.92983 7.17512 7.22529 7.34680 7.40496 7.52187 7.68068 7.72079 7.81749 8.01198 8.35732 9.20296 9.82238 10.31140 11.28181 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.004045 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.396687 B = 6920.353300 C = 8779.256018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.597 5.597 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.907 5.907 7 Si 0.901 3.099 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.180 3.820 12 C -0.074 4.074 13 C -0.086 4.086 14 C -0.119 4.119 15 C -0.140 4.140 16 C -0.113 4.113 17 C -0.130 4.130 18 C 0.168 3.832 19 N -0.697 5.697 20 C 0.603 3.397 21 O -0.531 6.531 22 C -0.019 4.019 23 C -0.237 4.237 24 S 0.452 5.548 25 N -0.285 5.285 26 N -0.205 5.205 27 H 0.030 0.970 28 H 0.045 0.955 29 H -0.002 1.002 30 H 0.254 0.746 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.162 0.838 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.415 0.585 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.419 -13.564 -3.664 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.319 5.319 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.193 4.193 6 N -0.552 5.552 7 Si 0.731 3.269 8 H -0.212 1.212 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.053 3.947 12 C -0.078 4.078 13 C -0.104 4.104 14 C -0.137 4.137 15 C -0.159 4.159 16 C -0.131 4.131 17 C -0.131 4.131 18 C 0.045 3.955 19 N -0.348 5.348 20 C 0.384 3.616 21 O -0.407 6.407 22 C -0.167 4.167 23 C -0.394 4.394 24 S 0.588 5.412 25 N -0.265 5.265 26 N -0.075 5.075 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.016 0.984 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.180 0.820 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.251 0.749 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 13.192 -12.688 -3.787 18.691 hybrid contribution -0.658 0.333 0.343 0.813 sum 12.534 -12.354 -3.444 17.933 Atomic orbital electron populations 1.20839 0.82376 0.95886 0.99342 1.43945 1.01907 1.00461 1.85626 1.19147 0.97726 0.85073 1.36411 0.91456 1.24917 0.97929 0.98265 0.98174 1.70023 1.19925 1.27280 1.37947 0.86382 0.78449 0.83954 0.78089 1.21180 1.21644 1.20913 1.19934 0.96500 0.88298 0.90006 1.21294 0.94467 0.92353 0.99641 1.21798 0.96708 1.01084 0.90775 1.21295 0.99061 0.95920 0.97453 1.20972 1.00909 0.95801 0.98172 1.20814 1.00709 0.99527 0.92090 1.19586 1.03305 0.96678 0.93567 1.20213 0.85225 0.95437 0.94587 1.45999 1.26073 1.29774 1.32929 1.16623 0.81232 0.83492 0.80241 1.90827 1.66340 1.23974 1.59598 1.22725 1.01008 0.94638 0.98303 1.28862 1.00554 1.08079 1.01941 1.81522 1.22143 1.08272 1.29242 1.78722 1.12033 1.24754 1.10999 1.71569 1.02570 1.10451 1.22929 0.95172 0.93638 0.98368 0.93606 0.92085 0.93157 0.82018 0.86841 0.87072 0.86993 0.90737 0.90123 0.74867 0.77463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.83 8.61 59.85 0.52 4.34 16 2 N -0.60 -14.43 1.74 -182.50 -0.32 -14.74 16 3 C -0.25 -6.75 9.17 -15.06 -0.14 -6.88 16 4 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 5 C 0.01 0.15 5.04 -17.43 -0.09 0.06 16 6 N -0.91 -25.15 10.78 55.49 0.60 -24.55 16 7 Si 0.90 21.65 29.58 -169.99 -5.03 16.62 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.18 3.65 5.00 -5.19 -0.03 3.63 16 12 C -0.07 -1.40 5.88 -104.63 -0.62 -2.02 16 13 C -0.09 -1.77 9.14 -39.58 -0.36 -2.13 16 14 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 15 C -0.14 -2.13 10.05 -39.58 -0.40 -2.53 16 16 C -0.11 -1.65 9.67 -39.58 -0.38 -2.03 16 17 C -0.13 -2.06 5.25 -104.62 -0.55 -2.61 16 18 C 0.17 2.35 5.16 -5.19 -0.03 2.32 16 19 N -0.70 -9.84 5.02 -62.55 -0.31 -10.16 16 20 C 0.60 8.59 7.81 -12.51 -0.10 8.50 16 21 O -0.53 -8.49 16.80 5.28 0.09 -8.40 16 22 C -0.02 -0.24 6.87 -83.78 -0.58 -0.82 16 23 C -0.24 -2.15 11.21 30.64 0.34 -1.81 16 24 S 0.45 3.48 23.38 -107.50 -2.51 0.97 16 25 N -0.28 -3.53 12.49 60.35 0.75 -2.78 16 26 N -0.20 -2.84 11.24 32.74 0.37 -2.47 16 27 H 0.03 0.76 6.81 -51.93 -0.35 0.41 16 28 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 29 H 0.00 -0.05 7.89 -51.93 -0.41 -0.46 16 30 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.06 1.23 7.51 -51.93 -0.39 0.84 16 32 H 0.05 0.96 7.30 -51.93 -0.38 0.58 16 33 H 0.16 3.98 5.75 -52.48 -0.30 3.68 16 34 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 35 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.11 1.36 8.00 -52.49 -0.42 0.94 16 37 H 0.07 0.95 7.95 -51.93 -0.41 0.54 16 38 H 0.08 1.17 7.22 -51.93 -0.37 0.80 16 39 H 0.41 6.03 8.05 -40.82 -0.33 5.71 16 40 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -30.59 355.25 -8.37 -38.96 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.56 Total: 5.65 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.80 Total: -4.46 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 1.09 Total: -54.70 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -2.51 Total: 0.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.59 -8.37 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484555859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.126 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds