Wall clock time and date at job start Tue Mar 31 2020 16:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 119.99979 * 2 1 4 4 H 1.08001 * 119.99886 * 201.82093 * 3 2 1 5 5 C 1.38811 * 120.00140 * 21.81586 * 3 2 1 6 6 N 1.31622 * 119.99947 * 15.24106 * 5 3 2 7 7 Si 1.86801 * 120.00005 * 195.23852 * 5 3 2 8 8 H 1.48499 * 109.47323 * 60.00263 * 7 5 3 9 9 H 1.48500 * 109.47157 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47051 * 299.99899 * 7 5 3 11 11 C 1.46504 * 119.99671 * 179.97438 * 2 1 3 12 12 C 1.50693 * 109.47400 * 273.78013 * 11 2 1 13 13 C 1.38256 * 119.99962 * 357.99173 * 12 11 2 14 14 C 1.38213 * 120.00161 * 180.27620 * 13 12 11 15 15 C 1.38256 * 119.99693 * 359.48671 * 14 13 12 16 16 C 1.38213 * 120.00169 * 0.49341 * 15 14 13 17 17 C 1.38203 * 120.00320 * 178.00943 * 12 11 2 18 18 C 1.50709 * 120.00079 * 359.97438 * 17 12 11 19 19 N 1.46501 * 109.46810 * 75.39315 * 18 17 12 20 20 C 1.34778 * 119.99736 * 180.02562 * 19 18 17 21 21 O 1.21598 * 120.00165 * 0.02562 * 20 19 18 22 22 C 1.47448 * 120.00016 * 179.97438 * 20 19 18 23 23 C 1.37976 * 124.15822 * 179.97438 * 22 20 19 24 24 S 1.72102 * 104.03743 * 179.97438 * 23 22 20 25 25 N 1.56403 * 96.15028 * 359.97438 * 24 23 22 26 26 N 1.27417 * 109.87875 * 359.74722 * 25 24 23 27 27 H 1.08999 * 109.46904 * 273.49787 * 1 2 3 28 28 H 1.09000 * 109.46976 * 33.49912 * 1 2 3 29 29 H 1.09001 * 109.47328 * 153.49592 * 1 2 3 30 30 H 0.96996 * 120.00019 * 179.97438 * 6 5 3 31 31 H 1.09003 * 109.46512 * 153.78386 * 11 2 1 32 32 H 1.08994 * 109.46720 * 33.78535 * 11 2 1 33 33 H 1.08004 * 119.99887 * 359.97438 * 13 12 11 34 34 H 1.07998 * 120.00174 * 179.72071 * 14 13 12 35 35 H 1.08008 * 119.99858 * 180.25033 * 15 14 13 36 36 H 1.07995 * 120.00242 * 179.76805 * 16 15 14 37 37 H 1.08995 * 109.47066 * 195.39545 * 18 17 12 38 38 H 1.08999 * 109.46735 * 315.40058 * 18 17 12 39 39 H 0.97007 * 120.00259 * 0.02562 * 19 18 17 40 40 H 1.08001 * 127.97873 * 359.95940 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1717 1.2194 -0.3477 5 6 1.5302 2.3450 0.4467 6 7 0.4146 2.2693 1.1411 7 14 2.2799 4.0123 0.0625 8 1 2.3588 4.1922 -1.4094 9 1 1.4330 5.0826 0.6478 10 1 3.6441 4.0875 0.6443 11 6 2.1975 -1.2688 0.0006 12 6 2.3675 -1.7501 1.4184 13 6 1.8950 -0.9859 2.4692 14 6 2.0560 -1.4245 3.7699 15 6 2.6802 -2.6326 4.0197 16 6 3.1522 -3.3968 2.9693 17 6 2.9961 -2.9552 1.6685 18 6 3.5111 -3.7884 0.5231 19 7 4.7409 -3.1899 -0.0019 20 6 5.3829 -3.7673 -1.0367 21 8 4.9412 -4.7848 -1.5349 22 6 6.6204 -3.1646 -1.5654 23 6 7.3456 -3.6825 -2.6188 24 16 8.6625 -2.5889 -2.7966 25 7 8.2453 -1.6333 -1.6309 26 7 7.1703 -2.0527 -1.0905 27 1 -0.3633 0.0627 1.0258 28 1 -0.3633 0.8570 -0.5672 29 1 -0.3634 -0.9197 -0.4586 30 1 -0.0181 3.0792 1.4536 31 1 3.1776 -1.1226 -0.4535 32 1 1.6394 -2.0107 -0.5706 33 1 1.4043 -0.0437 2.2739 34 1 1.6909 -0.8254 4.5910 35 1 2.8024 -2.9773 5.0360 36 1 3.6431 -4.3387 3.1646 37 1 3.7199 -4.7990 0.8740 38 1 2.7597 -3.8256 -0.2657 39 1 5.0931 -2.3780 0.3953 40 1 7.1355 -4.5697 -3.1978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484555859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:20 Heat of formation + Delta-G solvation = 73.168471 kcal Electronic energy + Delta-G solvation = -25666.092458 eV Core-core repulsion = 21994.761464 eV Total energy + Delta-G solvation = -3671.330994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.14562 -40.82229 -39.92615 -37.37404 -36.09987 -33.75457 -33.31523 -32.24990 -31.47569 -28.51673 -28.04914 -27.58823 -26.88045 -24.35557 -23.84883 -22.26759 -21.87408 -21.41688 -20.34518 -18.73617 -18.08707 -17.28893 -17.20931 -17.12179 -16.81515 -16.38900 -16.23508 -15.64637 -15.52835 -15.49345 -14.98654 -14.78111 -14.57730 -14.01065 -13.65623 -13.61587 -13.56213 -13.28847 -13.05885 -12.99067 -12.78461 -12.59294 -12.31063 -12.07943 -11.98163 -11.84262 -11.62084 -11.52979 -11.26213 -11.16114 -10.90000 -10.61761 -10.19912 -9.62504 -9.38628 -8.83110 -7.83109 -5.28994 -0.92508 -0.03452 0.32464 0.40938 0.56246 0.68130 1.45350 1.46202 1.52566 2.00634 2.12834 2.50568 2.75456 3.05903 3.31139 3.63436 3.66773 3.74439 3.90347 4.08452 4.20834 4.36540 4.38802 4.42089 4.60548 4.72693 4.76326 4.80689 4.82435 5.04042 5.21169 5.23261 5.29757 5.38906 5.60912 5.65129 5.68782 5.86775 5.98687 6.21567 6.28544 6.34557 6.53659 6.93618 7.15541 7.85355 8.29800 9.20061 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.004045 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.396687 B = 6920.353300 C = 8779.256018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.608 5.608 3 C -0.258 4.258 4 H 0.062 0.938 5 C -0.040 4.040 6 N -0.928 5.928 7 Si 0.956 3.044 8 H -0.283 1.283 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.184 3.816 12 C -0.090 4.090 13 C -0.117 4.117 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.103 4.103 17 C -0.120 4.120 18 C 0.172 3.828 19 N -0.698 5.698 20 C 0.605 3.395 21 O -0.553 6.553 22 C -0.047 4.047 23 C -0.232 4.232 24 S 0.561 5.439 25 N -0.336 5.336 26 N -0.239 5.239 27 H 0.008 0.992 28 H 0.019 0.981 29 H 0.024 0.976 30 H 0.248 0.752 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.412 0.588 40 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.642 -15.884 -4.051 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.330 5.330 3 C -0.388 4.388 4 H 0.080 0.920 5 C -0.236 4.236 6 N -0.574 5.574 7 Si 0.785 3.215 8 H -0.209 1.209 9 H -0.218 1.218 10 H -0.207 1.207 11 C 0.058 3.942 12 C -0.093 4.093 13 C -0.135 4.135 14 C -0.147 4.147 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.121 4.121 18 C 0.049 3.951 19 N -0.348 5.348 20 C 0.388 3.612 21 O -0.431 6.431 22 C -0.195 4.195 23 C -0.389 4.389 24 S 0.696 5.304 25 N -0.317 5.317 26 N -0.108 5.108 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.248 0.752 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 15.430 -15.019 -4.170 21.933 hybrid contribution -1.207 0.930 0.379 1.570 sum 14.223 -14.089 -3.791 20.375 Atomic orbital electron populations 1.20567 0.82605 0.95902 0.97796 1.44046 1.02009 1.01260 1.85729 1.19303 0.97578 0.86289 1.35614 0.92023 1.25528 0.98623 1.00914 0.98549 1.70175 1.20990 1.27311 1.38963 0.85513 0.77626 0.80578 0.77746 1.20895 1.21838 1.20709 1.19939 0.95948 0.86909 0.91385 1.20996 0.96408 0.93913 0.97984 1.21479 0.98906 1.00263 0.92889 1.21397 0.99709 0.97345 0.96266 1.21334 0.98894 0.94247 1.00209 1.21245 0.99307 1.00506 0.91050 1.19677 1.02013 0.95314 0.95058 1.20204 0.85133 0.95947 0.93780 1.45990 1.26024 1.29662 1.33127 1.16790 0.81555 0.83124 0.79770 1.90803 1.67166 1.24871 1.60215 1.22594 1.01339 0.95481 1.00064 1.29291 1.00333 1.08723 1.00566 1.81095 1.19038 1.05019 1.25254 1.78332 1.12365 1.27348 1.13643 1.71601 1.03473 1.11316 1.24398 0.97331 0.96200 0.95750 0.94264 0.92441 0.92043 0.86676 0.86329 0.83492 0.83212 0.88627 0.90754 0.75203 0.74972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.77 8.61 127.77 1.10 9.87 16 2 N -0.61 -30.42 1.74 -731.31 -1.27 -31.69 16 3 C -0.26 -14.16 9.17 84.03 0.77 -13.39 16 4 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16 5 C -0.04 -2.24 5.04 84.86 0.43 -1.82 16 6 N -0.93 -53.76 10.78 21.65 0.23 -53.52 16 7 Si 0.96 45.67 29.58 68.60 2.03 47.70 16 8 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 9 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 C 0.18 7.62 5.00 85.63 0.43 8.05 16 12 C -0.09 -3.44 5.88 -19.87 -0.12 -3.55 16 13 C -0.12 -4.98 9.14 22.27 0.20 -4.77 16 14 C -0.13 -4.50 10.05 22.27 0.22 -4.27 16 15 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 16 C -0.10 -2.66 9.67 22.27 0.22 -2.44 16 17 C -0.12 -3.59 5.25 -19.86 -0.10 -3.69 16 18 C 0.17 4.51 5.16 85.64 0.44 4.95 16 19 N -0.70 -19.11 5.02 -470.08 -2.36 -21.47 16 20 C 0.61 16.65 7.81 86.67 0.68 17.33 16 21 O -0.55 -16.89 16.80 -4.02 -0.07 -16.96 16 22 C -0.05 -1.13 6.87 41.36 0.28 -0.85 16 23 C -0.23 -3.63 11.21 67.76 0.76 -2.88 16 24 S 0.56 7.09 23.38 -56.49 -1.32 5.77 16 25 N -0.34 -7.97 12.49 37.02 0.46 -7.51 16 26 N -0.24 -6.52 11.24 -50.34 -0.57 -7.09 16 27 H 0.01 0.46 6.81 -2.39 -0.02 0.44 16 28 H 0.02 1.05 7.21 -2.39 -0.02 1.03 16 29 H 0.02 1.05 7.89 -2.39 -0.02 1.03 16 30 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.06 2.38 7.51 -2.39 -0.02 2.36 16 32 H 0.06 2.35 7.30 -2.39 -0.02 2.34 16 33 H 0.12 6.04 5.75 -2.91 -0.02 6.02 16 34 H 0.12 3.88 8.06 -2.91 -0.02 3.85 16 35 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.15 2.83 8.00 -2.91 -0.02 2.80 16 37 H 0.10 2.14 7.95 -2.39 -0.02 2.12 16 38 H 0.07 2.07 7.22 -2.39 -0.02 2.05 16 39 H 0.41 11.92 8.05 -92.70 -0.75 11.17 16 40 H 0.23 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -69.70 355.25 3.02 -66.68 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.35 Total: 18.87 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 5.53 Total: -0.78 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -3.50 Total: -121.28 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.07 Total: -16.96 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 7.09 SS G_CDS: -1.32 Total: 5.77 kcal Total: -69.70 3.02 -66.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484555859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.844 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds