Wall clock time and date at job start Tue Mar 31 2020 16:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00225 * 2 1 4 4 C 1.50699 * 109.46785 * 66.04545 * 3 2 1 5 5 C 1.31160 * 119.99900 * 124.99869 * 4 3 2 6 6 Cl 1.73599 * 120.00113 * 0.02562 * 5 4 3 7 7 C 1.46902 * 110.99973 * 236.04755 * 2 1 3 8 8 C 1.53009 * 109.47085 * 199.55375 * 7 2 1 9 9 H 1.09004 * 110.88250 * 300.58126 * 8 7 2 10 10 C 1.55155 * 111.00345 * 176.66287 * 8 7 2 11 11 C 1.54318 * 102.86144 * 206.22840 * 10 8 7 12 12 N 1.47027 * 107.27634 * 22.52217 * 11 10 8 13 13 C 1.34770 * 125.64954 * 180.96894 * 12 11 10 14 14 O 1.21287 * 120.00121 * 179.68913 * 13 12 11 15 15 C 1.50705 * 120.00089 * 359.69479 * 13 12 11 16 16 S 1.81000 * 109.47252 * 179.97438 * 15 13 12 17 17 C 1.76192 * 100.00035 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99837 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00370 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99553 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00578 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47576 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47094 * 299.99971 * 21 19 17 24 24 H 1.48507 * 109.47260 * 59.99369 * 21 19 17 25 25 C 1.47427 * 108.70008 * 0.70574 * 12 11 10 26 26 H 1.08998 * 109.46773 * 188.23598 * 1 2 3 27 27 H 1.08992 * 109.46725 * 308.23426 * 1 2 3 28 28 H 1.09002 * 109.46889 * 68.23648 * 1 2 3 29 29 H 1.09003 * 109.47137 * 186.04415 * 3 2 1 30 30 H 1.09000 * 109.47226 * 306.04754 * 3 2 1 31 31 H 1.07998 * 120.00137 * 305.00284 * 4 3 2 32 32 H 1.08003 * 119.99944 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47102 * 79.55669 * 7 2 1 34 34 H 1.08993 * 109.47081 * 319.55024 * 7 2 1 35 35 H 1.09001 * 110.71586 * 324.77774 * 10 8 7 36 36 H 1.08993 * 110.72242 * 88.05660 * 10 8 7 37 37 H 1.08994 * 109.98736 * 263.04908 * 11 10 8 38 38 H 1.08995 * 109.77650 * 141.88193 * 11 10 8 39 39 H 1.09000 * 109.46992 * 59.99653 * 15 13 12 40 40 H 1.08994 * 109.46730 * 299.99639 * 15 13 12 41 41 H 0.97008 * 120.00082 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.36712 * 94.93710 * 25 12 11 43 43 H 1.09003 * 110.36401 * 217.25995 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 6 2.5772 2.5782 2.0428 6 17 4.2347 2.5034 1.5320 7 6 1.9954 -0.7660 -1.1376 8 6 3.4473 -1.1603 -0.8588 9 1 4.0668 -0.2770 -0.7033 10 6 4.0132 -2.0431 -2.0024 11 6 5.1121 -2.8618 -1.2927 12 7 4.7887 -2.8756 0.1415 13 6 5.5173 -3.4727 1.1053 14 8 5.1566 -3.4150 2.2618 15 6 6.7805 -4.2120 0.7460 16 16 7.5262 -4.8970 2.2462 17 6 8.9416 -5.6841 1.5525 18 1 9.1164 -5.6399 0.4876 19 6 9.8315 -6.3618 2.3742 20 7 9.6182 -6.4161 3.6720 21 14 11.3326 -7.1957 1.6388 22 1 12.1169 -7.8457 2.7193 23 1 10.8977 -8.2220 0.6575 24 1 12.1761 -6.1829 0.9547 25 6 3.5387 -2.1228 0.3515 26 1 -0.3633 -1.0171 0.1472 27 1 -0.3632 0.6360 0.8072 28 1 -0.3633 0.3810 -0.9544 29 1 3.0798 1.3444 -0.1082 30 1 1.5612 1.9274 -0.8309 31 1 0.6058 2.0939 1.6161 32 1 2.3202 3.0627 2.9732 33 1 1.9517 -0.1544 -2.0388 34 1 1.3956 -1.6649 -1.2791 35 1 3.2389 -2.6969 -2.4040 36 1 4.4440 -1.4248 -2.7898 37 1 6.0843 -2.3944 -1.4489 38 1 5.1215 -3.8804 -1.6804 39 1 7.4819 -3.5245 0.2733 40 1 6.5438 -5.0213 0.0554 41 1 10.2403 -6.8894 4.2464 42 1 2.6850 -2.8004 0.3625 43 1 3.5878 -1.5579 1.2825 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494119921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:25 Heat of formation + Delta-G solvation = -16.435787 kcal Electronic energy + Delta-G solvation = -23675.151976 eV Core-core repulsion = 20101.042943 eV Total energy + Delta-G solvation = -3574.109032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.87528 -38.46721 -37.11910 -36.53043 -33.56619 -32.38696 -32.03596 -29.53582 -29.10775 -27.41808 -26.16908 -25.39597 -23.55622 -22.16664 -20.53536 -19.99692 -19.18004 -17.64994 -16.83119 -16.60850 -16.44393 -15.66919 -15.31503 -14.92080 -14.76783 -14.58052 -14.17177 -13.95127 -13.79509 -13.55854 -13.14434 -12.84040 -12.74012 -12.53236 -12.42999 -12.32815 -12.17567 -11.91379 -11.71555 -11.61682 -11.18736 -11.04656 -11.00694 -10.97903 -10.82611 -10.72635 -10.64478 -9.77578 -9.47499 -9.28403 -9.01718 -8.65344 -8.35325 -8.17475 -6.44646 -6.17005 -3.87173 1.54055 2.10156 3.02971 3.18986 3.26349 3.29528 3.32698 3.55805 3.71177 4.24761 4.34479 4.43549 4.49937 4.54890 4.76776 4.85911 4.98060 5.05357 5.08706 5.16536 5.17782 5.20139 5.27277 5.38494 5.44809 5.46361 5.54704 5.60200 5.64449 5.71996 5.79920 5.84501 5.94975 6.01853 6.11527 6.13288 6.21237 6.57774 6.64293 6.67526 7.63386 7.81857 8.39431 8.69003 9.27848 10.90397 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.002484 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.171448 B =11268.359208 C =12046.006975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.535 5.535 3 C 0.068 3.932 4 C -0.139 4.139 5 C -0.099 4.099 6 Cl -0.087 7.087 7 C 0.068 3.932 8 C -0.098 4.098 9 H 0.084 0.916 10 C -0.126 4.126 11 C 0.103 3.897 12 N -0.629 5.629 13 C 0.547 3.453 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.071 0.929 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.283 1.283 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.128 3.872 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.269 0.731 42 H 0.062 0.938 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.230 18.003 -13.123 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C -0.060 4.060 4 C -0.158 4.158 5 C -0.144 4.144 6 Cl -0.059 7.059 7 C -0.060 4.060 8 C -0.118 4.118 9 H 0.102 0.898 10 C -0.164 4.164 11 C -0.021 4.021 12 N -0.366 5.366 13 C 0.336 3.664 14 O -0.390 6.390 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.208 1.208 23 H -0.200 1.200 24 H -0.200 1.200 25 C 0.006 3.994 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.356 17.726 -10.765 28.368 hybrid contribution 1.136 -0.196 -2.583 2.828 sum -18.220 17.530 -13.348 28.590 Atomic orbital electron populations 1.22451 0.87209 1.02755 1.00231 1.61981 1.07792 1.12684 1.43387 1.21449 1.02105 0.88143 0.94259 1.23020 0.98959 0.97196 0.96633 1.24510 0.84589 1.04493 1.00807 1.98381 1.19919 1.96906 1.90678 1.22073 0.95004 0.97887 0.91041 1.22376 0.95762 0.98309 0.95317 0.89767 1.22669 0.98140 0.98224 0.97388 1.21949 0.98494 1.00450 0.81191 1.48546 1.25717 1.55257 1.07102 1.19975 0.84137 0.78091 0.84229 1.90709 1.70373 1.59293 1.18594 1.23506 0.96812 1.02123 1.07252 1.85395 1.27095 1.66841 1.04071 1.22824 1.10116 1.39275 0.96092 0.91038 1.24987 0.98096 0.95804 0.94700 1.70016 1.36660 1.40434 1.03199 0.86231 0.81303 0.79374 0.78619 1.20822 1.19965 1.19959 1.21993 0.86062 0.92781 0.98614 0.91041 0.91270 0.95660 0.88676 0.93594 0.84913 0.83455 0.94007 0.90197 0.90439 0.90145 0.91434 0.91380 0.89449 0.89431 0.92164 0.92003 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.38 60.06 0.56 0.70 16 2 N -0.53 -4.29 4.46 -244.37 -1.09 -5.38 16 3 C 0.07 0.52 5.09 -4.97 -0.03 0.49 16 4 C -0.14 -0.99 9.20 -36.07 -0.33 -1.32 16 5 C -0.10 -0.77 10.82 28.97 0.31 -0.46 16 6 Cl -0.09 -0.88 26.96 -51.86 -1.40 -2.28 16 7 C 0.07 0.50 4.45 -3.82 -0.02 0.48 16 8 C -0.10 -0.91 3.05 -88.47 -0.27 -1.18 16 9 H 0.08 0.85 6.86 -51.93 -0.36 0.49 16 10 C -0.13 -1.01 6.42 -24.90 -0.16 -1.17 16 11 C 0.10 1.17 6.48 -3.06 -0.02 1.15 16 12 N -0.63 -9.79 3.33 -170.52 -0.57 -10.35 16 13 C 0.55 11.28 7.87 -10.99 -0.09 11.19 16 14 O -0.52 -12.69 16.12 5.55 0.09 -12.60 16 15 C -0.15 -3.16 5.35 36.01 0.19 -2.96 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.53 -15.59 9.50 30.94 0.29 -15.29 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.64 13.22 55.49 0.73 -25.91 16 21 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.13 1.70 6.16 -2.53 -0.02 1.68 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.38 6.36 -51.93 -0.33 0.05 16 28 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.10 0.84 4.52 -51.93 -0.23 0.61 16 30 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.13 0.70 6.81 -52.49 -0.36 0.35 16 32 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.04 0.27 8.00 -51.93 -0.42 -0.15 16 34 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 35 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 40 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 41 H 0.27 7.66 8.31 -40.82 -0.34 7.33 16 42 H 0.06 0.81 8.03 -51.93 -0.42 0.39 16 43 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -35.35 378.65 -10.12 -45.48 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.70 Total: -2.82 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.34 Total: -4.65 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.92 Total: -41.64 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.40 Total: -2.28 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.35 -10.12 -45.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494119921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.042 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds