Wall clock time and date at job start Tue Mar 31 2020 16:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00225 * 2 1 4 4 C 1.50699 * 109.46785 * 66.04545 * 3 2 1 5 5 C 1.31160 * 119.99900 * 124.99869 * 4 3 2 6 6 Cl 1.73599 * 120.00113 * 0.02562 * 5 4 3 7 7 C 1.46902 * 110.99973 * 236.04755 * 2 1 3 8 8 C 1.53009 * 109.47085 * 199.55375 * 7 2 1 9 9 H 1.09004 * 110.88250 * 300.58126 * 8 7 2 10 10 C 1.55155 * 111.00345 * 176.66287 * 8 7 2 11 11 C 1.54318 * 102.86144 * 206.22840 * 10 8 7 12 12 N 1.47027 * 107.27634 * 22.52217 * 11 10 8 13 13 C 1.34770 * 125.64954 * 180.96894 * 12 11 10 14 14 O 1.21287 * 120.00121 * 179.68913 * 13 12 11 15 15 C 1.50705 * 120.00089 * 359.69479 * 13 12 11 16 16 S 1.81000 * 109.47252 * 179.97438 * 15 13 12 17 17 C 1.76192 * 100.00035 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99837 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00370 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99553 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00578 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47576 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47094 * 299.99971 * 21 19 17 24 24 H 1.48507 * 109.47260 * 59.99369 * 21 19 17 25 25 C 1.47427 * 108.70008 * 0.70574 * 12 11 10 26 26 H 1.08998 * 109.46773 * 188.23598 * 1 2 3 27 27 H 1.08992 * 109.46725 * 308.23426 * 1 2 3 28 28 H 1.09002 * 109.46889 * 68.23648 * 1 2 3 29 29 H 1.09003 * 109.47137 * 186.04415 * 3 2 1 30 30 H 1.09000 * 109.47226 * 306.04754 * 3 2 1 31 31 H 1.07998 * 120.00137 * 305.00284 * 4 3 2 32 32 H 1.08003 * 119.99944 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47102 * 79.55669 * 7 2 1 34 34 H 1.08993 * 109.47081 * 319.55024 * 7 2 1 35 35 H 1.09001 * 110.71586 * 324.77774 * 10 8 7 36 36 H 1.08993 * 110.72242 * 88.05660 * 10 8 7 37 37 H 1.08994 * 109.98736 * 263.04908 * 11 10 8 38 38 H 1.08995 * 109.77650 * 141.88193 * 11 10 8 39 39 H 1.09000 * 109.46992 * 59.99653 * 15 13 12 40 40 H 1.08994 * 109.46730 * 299.99639 * 15 13 12 41 41 H 0.97008 * 120.00082 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.36712 * 94.93710 * 25 12 11 43 43 H 1.09003 * 110.36401 * 217.25995 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 6 2.5772 2.5782 2.0428 6 17 4.2347 2.5034 1.5320 7 6 1.9954 -0.7660 -1.1376 8 6 3.4473 -1.1603 -0.8588 9 1 4.0668 -0.2770 -0.7033 10 6 4.0132 -2.0431 -2.0024 11 6 5.1121 -2.8618 -1.2927 12 7 4.7887 -2.8756 0.1415 13 6 5.5173 -3.4727 1.1053 14 8 5.1566 -3.4150 2.2618 15 6 6.7805 -4.2120 0.7460 16 16 7.5262 -4.8970 2.2462 17 6 8.9416 -5.6841 1.5525 18 1 9.1164 -5.6399 0.4876 19 6 9.8315 -6.3618 2.3742 20 7 9.6182 -6.4161 3.6720 21 14 11.3326 -7.1957 1.6388 22 1 12.1169 -7.8457 2.7193 23 1 10.8977 -8.2220 0.6575 24 1 12.1761 -6.1829 0.9547 25 6 3.5387 -2.1228 0.3515 26 1 -0.3633 -1.0171 0.1472 27 1 -0.3632 0.6360 0.8072 28 1 -0.3633 0.3810 -0.9544 29 1 3.0798 1.3444 -0.1082 30 1 1.5612 1.9274 -0.8309 31 1 0.6058 2.0939 1.6161 32 1 2.3202 3.0627 2.9732 33 1 1.9517 -0.1544 -2.0388 34 1 1.3956 -1.6649 -1.2791 35 1 3.2389 -2.6969 -2.4040 36 1 4.4440 -1.4248 -2.7898 37 1 6.0843 -2.3944 -1.4489 38 1 5.1215 -3.8804 -1.6804 39 1 7.4819 -3.5245 0.2733 40 1 6.5438 -5.0213 0.0554 41 1 10.2403 -6.8894 4.2464 42 1 2.6850 -2.8004 0.3625 43 1 3.5878 -1.5579 1.2825 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494119921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:24 Heat of formation + Delta-G solvation = -39.916496 kcal Electronic energy + Delta-G solvation = -23676.170175 eV Core-core repulsion = 20101.042943 eV Total energy + Delta-G solvation = -3575.127232 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07835 -39.38495 -38.11374 -37.33168 -34.59477 -34.29645 -33.06646 -30.84953 -30.19581 -27.97694 -27.73033 -26.94582 -24.53811 -22.89269 -21.27796 -20.73577 -20.54012 -19.55691 -18.03079 -17.57314 -17.38962 -16.88882 -16.66902 -16.34629 -15.93864 -15.78260 -15.48739 -14.97961 -14.64024 -14.55850 -14.32679 -14.20295 -13.82586 -13.54030 -13.34726 -13.29421 -13.16306 -13.03883 -12.86734 -12.78010 -12.63511 -12.55283 -12.24985 -11.98244 -11.79603 -11.73281 -11.54419 -11.32570 -11.13349 -10.95650 -10.29720 -10.08983 -9.66139 -9.19084 -8.69333 -8.34810 -6.14179 0.96735 1.23919 1.43929 1.44763 1.47785 1.55203 1.57375 2.13310 2.27182 2.98872 2.98928 3.26004 3.61055 3.64916 3.78237 3.89169 3.99143 4.18203 4.22692 4.31345 4.34838 4.41875 4.45284 4.47462 4.58571 4.65706 4.71671 4.75669 4.79947 4.87113 4.96116 5.00083 5.09044 5.13766 5.25104 5.31917 5.40197 5.40348 5.44752 6.09738 6.15234 6.18982 6.43152 7.05578 7.13324 8.74443 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.002484 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.171448 B =11268.359208 C =12046.006975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.556 5.556 3 C 0.067 3.933 4 C -0.134 4.134 5 C -0.114 4.114 6 Cl -0.114 7.114 7 C 0.072 3.928 8 C -0.086 4.086 9 H 0.075 0.925 10 C -0.111 4.111 11 C 0.088 3.912 12 N -0.620 5.620 13 C 0.542 3.458 14 O -0.570 6.570 15 C -0.118 4.118 16 S -0.152 6.152 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.278 1.278 23 H -0.261 1.261 24 H -0.262 1.262 25 C 0.126 3.874 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.272 0.728 42 H 0.066 0.934 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.944 18.345 -16.507 31.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.280 5.280 3 C -0.060 4.060 4 C -0.152 4.152 5 C -0.158 4.158 6 Cl -0.086 7.086 7 C -0.055 4.055 8 C -0.105 4.105 9 H 0.094 0.906 10 C -0.149 4.149 11 C -0.034 4.034 12 N -0.355 5.355 13 C 0.330 3.670 14 O -0.449 6.449 15 C -0.269 4.269 16 S 0.075 5.925 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.203 1.203 23 H -0.185 1.185 24 H -0.186 1.186 25 C 0.004 3.996 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.172 0.828 32 H 0.182 0.818 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.103 18.098 -14.216 30.557 hybrid contribution 1.208 -0.233 -1.580 2.002 sum -18.895 17.865 -15.795 30.425 Atomic orbital electron populations 1.22467 0.86004 1.02915 1.01142 1.61950 1.09007 1.12895 1.44113 1.21423 1.01331 0.88347 0.94897 1.23278 0.99760 0.96011 0.96200 1.24813 0.83289 1.05813 1.01921 1.98372 1.22189 1.97096 1.90982 1.22051 0.93396 0.98553 0.91548 1.22305 0.97470 0.97045 0.93709 0.90629 1.22689 0.97394 0.97927 0.96911 1.22367 1.00317 1.02086 0.78593 1.48546 1.25435 1.53225 1.08269 1.19803 0.84282 0.78522 0.84362 1.90682 1.71652 1.61622 1.20906 1.23294 0.97270 1.02746 1.03617 1.85604 1.28743 1.68083 1.10073 1.23155 1.10157 1.39479 0.96664 0.89918 1.26169 1.01714 0.96286 0.95033 1.70189 1.38165 1.41451 1.05004 0.84975 0.76514 0.78389 0.77924 1.20294 1.18518 1.18615 1.22128 0.84914 0.93167 0.99373 0.91227 0.90719 0.94426 0.90157 0.92294 0.82804 0.81768 0.91997 0.89307 0.88421 0.87411 0.90867 0.90251 0.87824 0.87554 0.91941 0.91617 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.38 127.69 1.20 1.42 16 2 N -0.56 -7.84 4.46 -927.04 -4.13 -11.98 16 3 C 0.07 0.92 5.09 85.56 0.44 1.35 16 4 C -0.13 -1.72 9.20 25.49 0.23 -1.48 16 5 C -0.11 -1.72 10.82 67.62 0.73 -0.99 16 6 Cl -0.11 -2.36 26.96 -2.72 -0.07 -2.43 16 7 C 0.07 0.86 4.45 86.31 0.38 1.24 16 8 C -0.09 -1.40 3.05 -9.40 -0.03 -1.43 16 9 H 0.08 1.41 6.86 -2.38 -0.02 1.40 16 10 C -0.11 -1.36 6.42 31.78 0.20 -1.16 16 11 C 0.09 1.78 6.48 86.73 0.56 2.35 16 12 N -0.62 -18.94 3.33 -811.81 -2.70 -21.65 16 13 C 0.54 22.80 7.87 87.66 0.69 23.49 16 14 O -0.57 -29.46 16.12 -3.05 -0.05 -29.51 16 15 C -0.12 -5.12 5.35 71.24 0.38 -4.74 16 16 S -0.15 -8.87 20.57 -56.49 -1.16 -10.04 16 17 C -0.55 -32.14 9.50 67.95 0.65 -31.49 16 18 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 19 C 0.01 0.74 5.49 84.86 0.47 1.20 16 20 N -0.91 -57.27 13.22 21.65 0.29 -56.98 16 21 Si 1.00 44.32 29.55 68.60 2.03 46.35 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 C 0.13 3.30 6.16 86.85 0.54 3.84 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.64 6.36 -2.39 -0.02 0.63 16 28 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.08 1.36 4.52 -2.39 -0.01 1.35 16 30 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 31 H 0.15 1.29 6.81 -2.91 -0.02 1.27 16 32 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.06 0.53 8.00 -2.39 -0.02 0.51 16 34 H 0.09 0.92 7.93 -2.39 -0.02 0.90 16 35 H 0.10 0.89 8.04 -2.39 -0.02 0.87 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 4.11 8.14 -2.40 -0.02 4.09 16 40 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16 41 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 42 H 0.07 1.67 8.03 -2.39 -0.02 1.65 16 43 H 0.05 1.61 8.04 -2.39 -0.02 1.59 16 Total: -1.00 -80.97 378.65 1.62 -79.35 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.99 Total: 13.30 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 6.44 Total: -6.41 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -6.55 Total: -90.61 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.05 Total: -29.51 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.04 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.07 Total: -2.43 kcal Total: -80.97 1.62 -79.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494119921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.430 kcal (2) G-P(sol) polarization free energy of solvation -80.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds