Wall clock time and date at job start Tue Mar 31 2020 16:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31167 * 1 3 3 Cl 1.73602 * 119.99927 * 2 1 4 4 C 1.50693 * 119.99607 * 179.97438 * 2 1 3 5 5 N 1.46902 * 109.47096 * 115.23969 * 4 2 1 6 6 C 1.46898 * 111.00334 * 160.17103 * 5 4 2 7 7 C 1.46901 * 110.99837 * 284.12889 * 5 4 2 8 8 C 1.53047 * 109.45972 * 174.99731 * 7 5 4 9 9 C 1.53192 * 109.31274 * 181.38391 * 8 7 5 10 10 N 1.46930 * 108.89136 * 305.29327 * 9 8 7 11 11 C 1.34776 * 120.63060 * 233.67960 * 10 9 8 12 12 O 1.21278 * 119.99930 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00184 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47344 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00215 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00103 * 359.97438 * 15 14 13 17 17 C 1.38794 * 120.00396 * 180.02562 * 15 14 13 18 18 N 1.31635 * 119.99738 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00461 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47373 * 89.99549 * 19 17 15 21 21 H 1.48503 * 109.47040 * 209.99731 * 19 17 15 22 22 H 1.48503 * 109.46920 * 329.99490 * 19 17 15 23 23 C 1.47203 * 118.55671 * 53.54034 * 10 9 8 24 24 C 1.53042 * 109.45588 * 295.06192 * 7 5 4 25 25 H 1.07994 * 119.99707 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00005 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47504 * 355.23803 * 4 2 1 28 28 H 1.09002 * 109.47228 * 235.23314 * 4 2 1 29 29 H 1.09000 * 109.47171 * 184.33831 * 6 5 4 30 30 H 1.08995 * 109.46980 * 304.33480 * 6 5 4 31 31 H 1.09000 * 109.47339 * 64.33567 * 6 5 4 32 32 H 1.08992 * 109.45203 * 55.03350 * 7 5 4 33 33 H 1.09000 * 109.49847 * 61.43275 * 8 7 5 34 34 H 1.09002 * 109.52167 * 301.35464 * 8 7 5 35 35 H 1.08997 * 109.58243 * 65.14916 * 9 8 7 36 36 H 1.08996 * 109.58496 * 185.43882 * 9 8 7 37 37 H 1.09006 * 109.46964 * 300.00400 * 13 11 10 38 38 H 1.08996 * 109.47435 * 59.99732 * 13 11 10 39 39 H 0.97002 * 120.00024 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.53621 * 186.67728 * 23 10 9 41 41 H 1.09000 * 109.67992 * 66.36552 * 23 10 9 42 42 H 1.08999 * 109.50281 * 298.56642 * 24 7 5 43 43 H 1.08994 * 109.49705 * 58.66822 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3117 0.0000 0.0000 3 17 2.1797 1.5034 0.0000 4 6 2.0650 -1.3051 0.0006 5 7 2.8213 -1.4345 -1.2521 6 6 3.9061 -2.4153 -1.1134 7 6 1.9339 -1.7854 -2.3690 8 6 2.7335 -1.7888 -3.6739 9 6 1.7979 -2.1213 -4.8405 10 7 1.1112 -3.3881 -4.5535 11 6 1.1470 -4.4043 -5.4381 12 8 1.7505 -4.2782 -6.4824 13 6 0.4372 -5.6973 -5.1295 14 16 0.6701 -6.8557 -6.5006 15 6 -0.2370 -8.2378 -5.8911 16 1 -0.7218 -8.1831 -4.9275 17 6 -0.3277 -9.3972 -6.6486 18 7 0.2636 -9.4641 -7.8228 19 14 -1.2888 -10.8627 -6.0021 20 1 -2.7032 -10.7605 -6.4427 21 1 -0.6949 -12.1167 -6.5314 22 1 -1.2323 -10.8761 -4.5182 23 6 0.3872 -3.5230 -3.2790 24 6 1.3386 -3.1749 -2.1298 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.3598 -2.1317 0.0863 28 1 2.7542 -1.3264 0.8448 29 1 4.4971 -2.4354 -2.0291 30 1 4.5441 -2.1351 -0.2753 31 1 3.4820 -3.4030 -0.9329 32 1 1.1299 -1.0528 -2.4377 33 1 3.5224 -2.5387 -3.6153 34 1 3.1770 -0.8058 -3.8319 35 1 1.0625 -1.3253 -4.9572 36 1 2.3784 -2.2200 -5.7577 37 1 0.8479 -6.1283 -4.2164 38 1 -0.6268 -5.5042 -4.9933 39 1 0.2000 -10.2742 -8.3524 40 1 0.0372 -4.5491 -3.1654 41 1 -0.4646 -2.8430 -3.2669 42 1 2.1406 -3.9117 -2.0857 43 1 0.7888 -3.1781 -1.1887 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506954248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:05 Heat of formation + Delta-G solvation = -13.987059 kcal Electronic energy + Delta-G solvation = -24179.548792 eV Core-core repulsion = 20605.545945 eV Total energy + Delta-G solvation = -3574.002848 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.35074 -38.76267 -37.01481 -35.88895 -33.59263 -32.44826 -31.93534 -31.10691 -28.97460 -27.54724 -25.84318 -25.44080 -23.56410 -22.97282 -20.67991 -20.02693 -18.93156 -17.73329 -17.04220 -16.43236 -15.76283 -15.69970 -15.35924 -15.14239 -14.94930 -14.82396 -14.34504 -14.12098 -13.92178 -13.54750 -13.05785 -12.93205 -12.84991 -12.63985 -12.44254 -12.25154 -12.10411 -11.96674 -11.85129 -11.54999 -11.33164 -11.08502 -11.05867 -11.01532 -10.98920 -10.78357 -10.62129 -9.82389 -9.53580 -9.36873 -9.08631 -8.67135 -8.52267 -8.24216 -6.52129 -6.23459 -3.94224 1.48252 1.98430 2.91604 3.03460 3.20419 3.24093 3.28353 3.55028 3.58490 4.18133 4.23334 4.41998 4.51346 4.70916 4.82404 4.85626 4.97821 5.02124 5.08111 5.11468 5.11639 5.19960 5.24425 5.28865 5.39700 5.53410 5.53888 5.60624 5.67556 5.69650 5.73596 5.81761 5.84719 5.88241 5.93978 6.06555 6.08746 6.62292 6.63987 6.68515 7.54191 7.57548 8.32984 8.55100 9.21693 10.83940 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.002363 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.088388 B =11845.305775 C =12359.723042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.054 4.054 3 Cl -0.080 7.080 4 C 0.082 3.918 5 N -0.528 5.528 6 C 0.017 3.983 7 C 0.085 3.915 8 C -0.124 4.124 9 C 0.114 3.886 10 N -0.620 5.620 11 C 0.535 3.465 12 O -0.516 6.516 13 C -0.150 4.150 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.115 3.885 24 C -0.171 4.171 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.268 0.732 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.037 19.472 18.897 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.081 4.081 3 Cl -0.052 7.052 4 C -0.045 4.045 5 N -0.250 5.250 6 C -0.130 4.130 7 C -0.023 4.023 8 C -0.163 4.163 9 C -0.009 4.009 10 N -0.357 5.357 11 C 0.323 3.677 12 O -0.390 6.390 13 C -0.301 4.301 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.009 4.009 24 C -0.211 4.211 25 H 0.139 0.861 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.300 20.122 17.072 26.594 hybrid contribution -1.718 -1.748 1.958 3.137 sum 1.582 18.374 19.030 26.500 Atomic orbital electron populations 1.24058 0.93901 1.03744 1.00271 1.23243 0.93399 0.88144 1.03315 1.98376 1.78248 1.31833 1.96708 1.21341 0.97400 0.92236 0.93565 1.62202 1.11597 1.47977 1.03212 1.22499 0.94015 0.93494 1.03032 1.21759 0.94877 0.94852 0.90838 1.21978 0.98319 1.02845 0.93112 1.21501 0.95454 0.85123 0.98863 1.48178 1.54032 1.14438 1.19051 1.20310 0.80036 0.84236 0.83070 1.90691 1.42426 1.81410 1.24523 1.23545 1.02508 0.97117 1.06893 1.85418 1.69902 1.07749 1.20349 1.22847 1.38060 1.00059 1.07364 0.91002 1.24994 0.95627 0.98304 0.94668 1.70020 1.41147 1.28313 1.10748 0.86172 0.79661 0.80706 0.78978 1.20253 1.20733 1.19727 1.21621 0.93860 1.02989 0.82456 1.22636 1.00539 0.99194 0.98708 0.86135 0.86941 0.91758 0.89302 0.90536 0.91410 0.94829 0.89677 0.91201 0.89954 0.91834 0.88621 0.89436 0.89345 0.92167 0.89237 0.91480 0.90677 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 14.02 28.97 0.41 -0.65 16 2 C -0.05 -0.38 5.31 -36.07 -0.19 -0.57 16 3 Cl -0.08 -0.67 28.99 -51.86 -1.50 -2.18 16 4 C 0.08 0.55 5.20 -4.98 -0.03 0.52 16 5 N -0.53 -4.14 4.67 -236.29 -1.10 -5.24 16 6 C 0.02 0.13 8.77 60.06 0.53 0.66 16 7 C 0.09 0.71 2.10 -67.67 -0.14 0.57 16 8 C -0.12 -1.20 5.11 -26.61 -0.14 -1.33 16 9 C 0.11 1.35 6.42 -3.71 -0.02 1.33 16 10 N -0.62 -8.55 2.98 -172.54 -0.51 -9.06 16 11 C 0.54 10.09 7.72 -10.99 -0.08 10.01 16 12 O -0.52 -11.76 15.27 5.56 0.08 -11.67 16 13 C -0.15 -3.02 4.51 36.00 0.16 -2.86 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 16 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 19 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.11 1.19 6.35 -3.55 -0.02 1.16 16 24 C -0.17 -1.44 4.69 -26.61 -0.12 -1.56 16 25 H 0.12 0.54 7.84 -52.49 -0.41 0.13 16 26 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 27 H 0.06 0.38 5.51 -51.93 -0.29 0.09 16 28 H 0.09 0.55 7.82 -51.93 -0.41 0.15 16 29 H 0.08 0.62 6.38 -51.93 -0.33 0.29 16 30 H 0.07 0.45 7.97 -51.93 -0.41 0.03 16 31 H 0.03 0.25 6.29 -51.93 -0.33 -0.07 16 32 H 0.09 0.73 7.51 -51.93 -0.39 0.34 16 33 H 0.07 0.75 6.51 -51.93 -0.34 0.41 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.33 7.00 -51.93 -0.36 0.97 16 37 H 0.09 1.63 7.70 -51.91 -0.40 1.23 16 38 H 0.09 1.65 7.96 -51.92 -0.41 1.23 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.09 0.97 5.97 -51.93 -0.31 0.66 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.73 6.46 -51.93 -0.34 0.39 16 43 H 0.07 0.50 6.19 -51.93 -0.32 0.18 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -33.41 367.49 -9.74 -43.15 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.28 Total: -1.98 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 0.54 Total: -5.58 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.88 Total: -39.63 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.41 -9.74 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506954248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.163 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds