Wall clock time and date at job start Tue Mar 31 2020 16:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31167 * 1 3 3 Cl 1.73602 * 119.99927 * 2 1 4 4 C 1.50693 * 119.99607 * 179.97438 * 2 1 3 5 5 N 1.46902 * 109.47096 * 115.23969 * 4 2 1 6 6 C 1.46898 * 111.00334 * 160.17103 * 5 4 2 7 7 C 1.46901 * 110.99837 * 284.12889 * 5 4 2 8 8 C 1.53047 * 109.45972 * 174.99731 * 7 5 4 9 9 C 1.53192 * 109.31274 * 181.38391 * 8 7 5 10 10 N 1.46930 * 108.89136 * 305.29327 * 9 8 7 11 11 C 1.34776 * 120.63060 * 233.67960 * 10 9 8 12 12 O 1.21278 * 119.99930 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00184 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47344 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00215 * 180.02562 * 14 13 11 16 16 H 1.08005 * 120.00103 * 359.97438 * 15 14 13 17 17 C 1.38794 * 120.00396 * 180.02562 * 15 14 13 18 18 N 1.31635 * 119.99738 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00461 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47373 * 89.99549 * 19 17 15 21 21 H 1.48503 * 109.47040 * 209.99731 * 19 17 15 22 22 H 1.48503 * 109.46920 * 329.99490 * 19 17 15 23 23 C 1.47203 * 118.55671 * 53.54034 * 10 9 8 24 24 C 1.53042 * 109.45588 * 295.06192 * 7 5 4 25 25 H 1.07994 * 119.99707 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00005 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47504 * 355.23803 * 4 2 1 28 28 H 1.09002 * 109.47228 * 235.23314 * 4 2 1 29 29 H 1.09000 * 109.47171 * 184.33831 * 6 5 4 30 30 H 1.08995 * 109.46980 * 304.33480 * 6 5 4 31 31 H 1.09000 * 109.47339 * 64.33567 * 6 5 4 32 32 H 1.08992 * 109.45203 * 55.03350 * 7 5 4 33 33 H 1.09000 * 109.49847 * 61.43275 * 8 7 5 34 34 H 1.09002 * 109.52167 * 301.35464 * 8 7 5 35 35 H 1.08997 * 109.58243 * 65.14916 * 9 8 7 36 36 H 1.08996 * 109.58496 * 185.43882 * 9 8 7 37 37 H 1.09006 * 109.46964 * 300.00400 * 13 11 10 38 38 H 1.08996 * 109.47435 * 59.99732 * 13 11 10 39 39 H 0.97002 * 120.00024 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.53621 * 186.67728 * 23 10 9 41 41 H 1.09000 * 109.67992 * 66.36552 * 23 10 9 42 42 H 1.08999 * 109.50281 * 298.56642 * 24 7 5 43 43 H 1.08994 * 109.49705 * 58.66822 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3117 0.0000 0.0000 3 17 2.1797 1.5034 0.0000 4 6 2.0650 -1.3051 0.0006 5 7 2.8213 -1.4345 -1.2521 6 6 3.9061 -2.4153 -1.1134 7 6 1.9339 -1.7854 -2.3690 8 6 2.7335 -1.7888 -3.6739 9 6 1.7979 -2.1213 -4.8405 10 7 1.1112 -3.3881 -4.5535 11 6 1.1470 -4.4043 -5.4381 12 8 1.7505 -4.2782 -6.4824 13 6 0.4372 -5.6973 -5.1295 14 16 0.6701 -6.8557 -6.5006 15 6 -0.2370 -8.2378 -5.8911 16 1 -0.7218 -8.1831 -4.9275 17 6 -0.3277 -9.3972 -6.6486 18 7 0.2636 -9.4641 -7.8228 19 14 -1.2888 -10.8627 -6.0021 20 1 -2.7032 -10.7605 -6.4427 21 1 -0.6949 -12.1167 -6.5314 22 1 -1.2323 -10.8761 -4.5182 23 6 0.3872 -3.5230 -3.2790 24 6 1.3386 -3.1749 -2.1298 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.3598 -2.1317 0.0863 28 1 2.7542 -1.3264 0.8448 29 1 4.4971 -2.4354 -2.0291 30 1 4.5441 -2.1351 -0.2753 31 1 3.4820 -3.4030 -0.9329 32 1 1.1299 -1.0528 -2.4377 33 1 3.5224 -2.5387 -3.6153 34 1 3.1770 -0.8058 -3.8319 35 1 1.0625 -1.3253 -4.9572 36 1 2.3784 -2.2200 -5.7577 37 1 0.8479 -6.1283 -4.2164 38 1 -0.6268 -5.5042 -4.9933 39 1 0.2000 -10.2742 -8.3524 40 1 0.0372 -4.5491 -3.1654 41 1 -0.4646 -2.8430 -3.2669 42 1 2.1406 -3.9117 -2.0857 43 1 0.7888 -3.1781 -1.1887 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506954248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:04 Heat of formation + Delta-G solvation = -35.682182 kcal Electronic energy + Delta-G solvation = -24180.489563 eV Core-core repulsion = 20605.545945 eV Total energy + Delta-G solvation = -3574.943619 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.36710 -39.79484 -37.69603 -36.81657 -34.58922 -34.22880 -32.91405 -31.95623 -30.38027 -28.08425 -27.69598 -26.56528 -24.40064 -23.84232 -21.51486 -20.70224 -20.13491 -19.44660 -18.24015 -17.26290 -16.98993 -16.87517 -16.68809 -16.20223 -15.93145 -15.77592 -15.51100 -15.17298 -15.02503 -14.52420 -14.44591 -14.10308 -13.87846 -13.46340 -13.39243 -13.16964 -13.15630 -13.03577 -12.89387 -12.69184 -12.59865 -12.51325 -12.27255 -12.04265 -11.79887 -11.71886 -11.58663 -11.38178 -11.14643 -10.87548 -10.26915 -10.03260 -9.71873 -9.21134 -8.68153 -8.34869 -6.13506 1.02451 1.25199 1.42403 1.45806 1.48924 1.56027 1.57249 2.09934 2.27061 2.95624 2.99299 3.24337 3.60718 3.72624 3.74552 3.91300 4.01544 4.16935 4.23997 4.24202 4.29980 4.41827 4.43440 4.48438 4.50802 4.62486 4.68428 4.78225 4.81500 4.84034 4.91303 5.00354 5.06397 5.14843 5.26382 5.31621 5.37704 5.41113 5.57806 6.05329 6.08702 6.19265 6.28839 7.06206 7.14181 8.74380 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.002363 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.088388 B =11845.305775 C =12359.723042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.071 4.071 3 Cl -0.100 7.100 4 C 0.085 3.915 5 N -0.535 5.535 6 C 0.019 3.981 7 C 0.093 3.907 8 C -0.115 4.115 9 C 0.112 3.888 10 N -0.606 5.606 11 C 0.532 3.468 12 O -0.568 6.568 13 C -0.122 4.122 14 S -0.154 6.154 15 C -0.544 4.544 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.257 1.257 23 C 0.106 3.894 24 C -0.163 4.163 25 H 0.140 0.860 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.271 0.729 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 19.800 21.922 29.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 Cl -0.072 7.072 4 C -0.043 4.043 5 N -0.257 5.257 6 C -0.129 4.129 7 C -0.016 4.016 8 C -0.153 4.153 9 C -0.010 4.010 10 N -0.340 5.340 11 C 0.320 3.680 12 O -0.447 6.447 13 C -0.273 4.273 14 S 0.073 5.927 15 C -0.692 4.692 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.181 1.181 23 C -0.016 4.016 24 C -0.202 4.202 25 H 0.158 0.842 26 H 0.132 0.868 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.508 20.495 20.159 28.787 hybrid contribution -1.169 -1.699 1.101 2.338 sum 0.339 18.796 21.260 28.379 Atomic orbital electron populations 1.24283 0.93463 1.04777 0.98049 1.23345 0.93752 0.87494 1.05222 1.98373 1.78776 1.33173 1.96912 1.21371 0.97639 0.92435 0.92825 1.62161 1.11735 1.48012 1.03759 1.22474 0.94042 0.93518 1.02834 1.21648 0.94740 0.94978 0.90201 1.21872 0.97593 1.02692 0.93177 1.21635 0.96060 0.84518 0.98817 1.48182 1.53090 1.13577 1.19187 1.20123 0.79765 0.84840 0.83260 1.90675 1.44799 1.82302 1.26881 1.23350 1.04026 0.95991 1.03906 1.85627 1.70760 1.10742 1.25595 1.23177 1.37940 1.00260 1.07789 0.89862 1.26147 0.96587 1.01746 0.94754 1.70192 1.42877 1.29351 1.12402 0.84946 0.77959 0.76060 0.78967 1.19272 1.20389 1.18062 1.21963 0.94792 1.03787 0.81067 1.22584 0.99952 0.98727 0.98955 0.84216 0.86752 0.90322 0.89020 0.91638 0.90583 0.94769 0.88988 0.92541 0.89231 0.89649 0.91278 0.87664 0.87422 0.92010 0.89422 0.88804 0.91927 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 14.02 67.61 0.95 -0.41 16 2 C -0.07 -0.81 5.31 25.48 0.14 -0.67 16 3 Cl -0.10 -1.54 28.99 -2.72 -0.08 -1.62 16 4 C 0.08 0.86 5.20 85.55 0.45 1.31 16 5 N -0.53 -7.07 4.67 -901.47 -4.21 -11.28 16 6 C 0.02 0.25 8.77 127.69 1.12 1.37 16 7 C 0.09 1.28 2.10 44.94 0.09 1.38 16 8 C -0.11 -2.06 5.11 30.67 0.16 -1.90 16 9 C 0.11 2.55 6.42 86.36 0.55 3.11 16 10 N -0.61 -15.86 2.98 -818.19 -2.44 -18.30 16 11 C 0.53 20.10 7.72 87.66 0.68 20.78 16 12 O -0.57 -26.89 15.27 -3.02 -0.05 -26.94 16 13 C -0.12 -4.84 4.51 71.23 0.32 -4.51 16 14 S -0.15 -8.61 20.57 -56.49 -1.16 -9.78 16 15 C -0.54 -30.84 9.50 67.95 0.65 -30.19 16 16 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 17 C 0.01 0.70 5.49 84.86 0.47 1.16 16 18 N -0.91 -56.00 13.22 21.65 0.29 -55.71 16 19 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 C 0.11 1.85 6.35 86.31 0.55 2.40 16 24 C -0.16 -2.19 4.69 30.68 0.14 -2.05 16 25 H 0.14 0.60 7.84 -2.91 -0.02 0.58 16 26 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 27 H 0.08 0.58 5.51 -2.39 -0.01 0.56 16 28 H 0.09 0.90 7.82 -2.39 -0.02 0.88 16 29 H 0.06 1.01 6.38 -2.39 -0.02 1.00 16 30 H 0.08 0.87 7.97 -2.39 -0.02 0.85 16 31 H 0.03 0.45 6.29 -2.39 -0.02 0.43 16 32 H 0.09 1.21 7.51 -2.39 -0.02 1.20 16 33 H 0.06 1.18 6.51 -2.39 -0.02 1.17 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.98 7.00 -2.39 -0.02 1.96 16 37 H 0.11 3.79 7.70 -2.39 -0.02 3.77 16 38 H 0.11 3.84 7.96 -2.40 -0.02 3.83 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.09 1.60 5.97 -2.39 -0.01 1.59 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.05 6.46 -2.39 -0.02 1.03 16 43 H 0.10 0.87 6.19 -2.39 -0.01 0.86 16 Total: -1.00 -75.53 367.49 1.64 -73.89 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.01 Total: 12.79 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 6.26 Total: -8.23 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -6.36 Total: -85.29 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.78 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -75.53 1.64 -73.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506954248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.206 kcal (2) G-P(sol) polarization free energy of solvation -75.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds