Wall clock time and date at job start Tue Mar 31 2020 16:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.53000 * 109.46840 * 269.99975 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99442 * 4 3 2 6 6 O 1.42899 * 109.47405 * 64.99638 * 4 3 2 7 7 C 1.53006 * 109.46846 * 185.00008 * 4 3 2 8 8 N 1.46497 * 109.46795 * 179.97438 * 7 4 3 9 9 C 1.36940 * 119.99811 * 179.97438 * 8 7 4 10 10 H 1.07998 * 120.00195 * 0.02562 * 9 8 7 11 11 C 1.38813 * 120.00112 * 179.97438 * 9 8 7 12 12 N 1.31615 * 119.99994 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00077 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46923 * 90.00322 * 13 11 9 15 15 H 1.48500 * 109.47284 * 210.00184 * 13 11 9 16 16 H 1.48500 * 109.46868 * 330.00301 * 13 11 9 17 17 C 1.34781 * 119.99832 * 179.97438 * 2 1 3 18 18 O 1.21585 * 120.00071 * 180.02562 * 17 2 1 19 19 C 1.47554 * 119.99711 * 0.02562 * 17 2 1 20 20 C 1.39921 * 120.17479 * 89.72668 * 19 17 2 21 21 F 1.35106 * 120.07619 * 359.97438 * 20 19 17 22 22 C 1.38173 * 119.85293 * 179.78507 * 20 19 17 23 23 C 1.38336 * 120.21059 * 0.48984 * 22 20 19 24 24 C 1.38449 * 120.35637 * 359.73968 * 23 22 20 25 25 F 1.35108 * 119.92411 * 180.02562 * 24 23 22 26 26 C 1.38440 * 120.14626 * 0.02562 * 24 23 22 27 27 F 1.35093 * 120.10976 * 179.97438 * 26 24 23 28 28 H 1.09000 * 109.46899 * 89.99956 * 1 2 3 29 29 H 1.08992 * 109.47334 * 209.99920 * 1 2 3 30 30 H 1.08994 * 109.46680 * 330.00544 * 1 2 3 31 31 H 1.09002 * 109.47391 * 149.99645 * 3 2 1 32 32 H 1.09001 * 109.46813 * 29.99701 * 3 2 1 33 33 H 0.96702 * 113.99557 * 60.00388 * 6 4 3 34 34 H 1.09002 * 109.46824 * 299.99583 * 7 4 3 35 35 H 1.09001 * 109.47241 * 59.99481 * 7 4 3 36 36 H 0.96995 * 120.00714 * 0.02562 * 8 7 4 37 37 H 0.96998 * 120.00304 * 180.02562 * 12 11 9 38 38 H 1.08005 * 119.89954 * 180.22389 * 22 20 19 39 39 H 1.07994 * 119.82229 * 179.71608 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.9644 0.9129 -1.9815 6 8 1.2062 1.9934 -2.0815 7 6 3.3240 2.9679 -1.4444 8 7 3.5687 3.3904 -2.8256 9 6 4.3290 4.5012 -3.0773 10 1 4.7486 5.0655 -2.2577 11 6 4.5613 4.9012 -4.3861 12 7 4.0504 4.2132 -5.3851 13 14 5.5990 6.4160 -4.7296 14 1 7.0244 6.0204 -4.8600 15 1 5.1442 7.0518 -5.9922 16 1 5.4534 7.3801 -3.6094 17 6 2.1389 -1.1673 0.0005 18 8 3.3548 -1.1673 0.0010 19 6 1.4010 -2.4450 0.0005 20 6 1.0448 -3.0515 -1.2091 21 9 1.3752 -2.4681 -2.3821 22 6 0.3578 -4.2503 -1.2013 23 6 0.0126 -4.8470 -0.0020 24 6 0.3565 -4.2522 1.2000 25 9 0.0154 -4.8429 2.3662 26 6 1.0491 -3.0535 1.2095 27 9 1.3838 -2.4735 2.3827 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5137 31 1 3.1500 1.1383 0.5139 32 1 1.6085 2.0283 0.5138 33 1 0.6957 2.6949 -1.6544 34 1 2.8123 3.7653 -0.9054 35 1 4.2748 2.7519 -0.9569 36 1 3.1916 2.8838 -3.5618 37 1 4.2130 4.4925 -6.2996 38 1 0.0856 -4.7209 -2.1346 39 1 -0.5284 -5.7817 -0.0033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507500708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:05 Heat of formation + Delta-G solvation = -166.347316 kcal Electronic energy + Delta-G solvation = -28619.801072 eV Core-core repulsion = 23921.181532 eV Total energy + Delta-G solvation = -4698.619540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -50.05545 -49.45722 -49.11851 -40.45602 -38.79041 -37.45222 -35.35828 -33.98853 -32.17145 -31.26192 -30.60813 -29.46409 -26.97338 -26.03007 -24.35416 -23.47424 -22.72393 -21.22774 -20.28275 -18.78259 -18.45089 -18.17430 -17.32254 -17.13718 -16.87535 -16.62302 -16.37109 -15.95875 -15.85159 -15.47600 -15.25097 -15.04919 -14.99581 -14.84767 -14.42548 -13.90052 -13.73921 -13.57277 -13.20770 -12.98420 -12.76928 -12.69300 -12.46075 -12.36782 -12.30566 -12.07242 -11.56058 -10.92062 -10.80397 -10.70742 -10.40112 -10.15212 -9.83724 -9.73837 -9.68327 -9.23569 -8.86885 -8.65373 -6.89098 -5.71748 -3.01302 0.00961 0.13993 2.11998 2.40467 2.62749 3.01792 3.40190 3.46111 3.50560 3.52597 3.74576 3.78269 4.06185 4.14614 4.57712 4.68483 4.77610 4.81648 4.95824 5.01376 5.08429 5.14676 5.18367 5.25473 5.33658 5.54514 5.58130 5.65220 5.71394 5.95905 5.98452 6.20108 6.33465 6.55467 6.74253 7.02166 7.71439 7.77830 8.02962 8.46348 9.57738 10.15676 10.51626 11.50640 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.002567 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.076476 B =10906.146933 C =11362.473061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.592 5.592 3 C 0.086 3.914 4 C 0.086 3.914 5 H 0.101 0.899 6 O -0.549 6.549 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.563 3.437 18 O -0.509 6.509 19 C -0.164 4.164 20 C 0.159 3.841 21 F -0.108 7.108 22 C -0.133 4.133 23 C -0.081 4.081 24 C 0.057 3.943 25 F -0.120 7.120 26 C 0.128 3.872 27 F -0.110 7.110 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.367 0.633 34 H 0.020 0.980 35 H 0.028 0.972 36 H 0.389 0.611 37 H 0.255 0.745 38 H 0.163 0.837 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.637 -19.842 14.567 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.323 5.323 3 C -0.037 4.037 4 C 0.026 3.974 5 H 0.119 0.881 6 O -0.353 6.353 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.347 3.653 18 O -0.384 6.384 19 C -0.169 4.169 20 C 0.139 3.861 21 F -0.086 7.086 22 C -0.152 4.152 23 C -0.100 4.100 24 C 0.037 3.963 25 F -0.099 7.099 26 C 0.106 3.894 27 F -0.088 7.088 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.213 0.787 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.224 0.776 37 H 0.065 0.935 38 H 0.180 0.820 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.671 -20.110 14.237 28.178 hybrid contribution 0.344 1.224 0.156 1.281 sum -13.327 -18.886 14.393 27.230 Atomic orbital electron populations 1.21878 0.78815 1.02765 1.03007 1.47636 1.07431 1.05471 1.71789 1.22390 0.98519 0.83733 0.99052 1.22546 0.85334 0.98320 0.91229 0.88114 1.86626 1.32238 1.59008 1.57402 1.21209 0.96354 0.92801 0.89824 1.42236 1.61762 1.32249 1.00753 1.19218 1.23689 1.02625 0.91821 0.91269 1.24765 1.01176 0.99421 0.95586 1.69684 1.49025 1.40851 0.98223 0.86181 0.80045 0.82584 0.77309 1.21698 1.21754 1.20794 1.17636 0.87080 0.82888 0.77677 1.90884 1.12553 1.86607 1.48355 1.19860 1.05582 0.99623 0.91879 1.17339 0.96412 0.92123 0.80275 1.91675 1.89796 1.83324 1.43785 1.21084 0.99884 0.94114 1.00138 1.21053 0.98980 1.00876 0.89115 1.17435 1.03010 0.92617 0.83257 1.91581 1.90270 1.82718 1.45281 1.17189 0.99021 0.92016 0.81142 1.91608 1.89978 1.83358 1.43838 0.91096 0.91992 0.90284 0.88512 0.89522 0.78704 0.96214 0.95472 0.77631 0.93508 0.81970 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 9.90 59.85 0.59 1.30 16 2 N -0.59 -7.50 2.84 -182.81 -0.52 -8.02 16 3 C 0.09 1.14 5.11 -4.04 -0.02 1.12 16 4 C 0.09 1.47 3.30 -26.73 -0.09 1.38 16 5 H 0.10 2.03 8.14 -51.93 -0.42 1.60 16 6 O -0.55 -9.10 12.64 -35.23 -0.45 -9.55 16 7 C 0.13 2.58 5.92 -4.04 -0.02 2.56 16 8 N -0.73 -19.17 5.49 -59.91 -0.33 -19.50 16 9 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 10 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 12 N -0.93 -29.08 13.06 55.49 0.72 -28.36 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.56 8.26 6.40 -12.46 -0.08 8.18 16 18 O -0.51 -9.45 16.68 5.29 0.09 -9.36 16 19 C -0.16 -1.89 3.93 -104.87 -0.41 -2.30 16 20 C 0.16 1.58 7.29 -38.98 -0.28 1.29 16 21 F -0.11 -1.36 16.83 2.25 0.04 -1.32 16 22 C -0.13 -0.79 10.01 -39.57 -0.40 -1.19 16 23 C -0.08 -0.41 10.01 -39.47 -0.39 -0.81 16 24 C 0.06 0.45 7.29 -39.43 -0.29 0.16 16 25 F -0.12 -1.02 17.18 2.25 0.04 -0.98 16 26 C 0.13 1.30 6.86 -38.91 -0.27 1.03 16 27 F -0.11 -1.28 16.74 2.25 0.04 -1.24 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 30 H 0.08 0.55 7.89 -51.93 -0.41 0.14 16 31 H 0.10 1.39 7.42 -51.93 -0.39 1.00 16 32 H 0.09 0.89 7.89 -51.93 -0.41 0.48 16 33 H 0.37 4.76 9.05 45.56 0.41 5.17 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.39 11.10 7.54 -40.82 -0.31 10.79 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.16 0.52 8.06 -52.48 -0.42 0.10 16 39 H 0.16 0.30 8.06 -52.49 -0.42 -0.12 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -36.36 355.00 -5.47 -41.83 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.52 Total: 8.18 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.91 Total: 5.09 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.12 Total: -55.87 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.36 Total: -18.91 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.11 Total: -3.54 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.36 -5.47 -41.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507500708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.522 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds