Wall clock time and date at job start Tue Mar 31 2020 16:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99736 * 2 1 4 4 C 1.53003 * 109.47074 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47174 * 64.99745 * 4 3 2 6 6 C 1.36909 * 120.00038 * 270.00257 * 5 4 3 7 7 H 1.08002 * 119.99843 * 139.08007 * 6 5 4 8 8 C 1.39015 * 119.99720 * 319.08139 * 6 5 4 9 9 N 1.31393 * 119.99691 * 165.42424 * 8 6 5 10 10 Si 1.86796 * 120.00164 * 345.42541 * 8 6 5 11 11 H 1.48500 * 109.47328 * 95.03758 * 10 8 6 12 12 H 1.48504 * 109.46757 * 215.03705 * 10 8 6 13 13 H 1.48496 * 109.47282 * 335.03250 * 10 8 6 14 14 C 1.34775 * 119.99925 * 90.00090 * 5 4 3 15 15 O 1.21637 * 120.00024 * 4.48785 * 14 5 4 16 16 C 1.47328 * 119.99980 * 184.49023 * 14 5 4 17 17 C 1.39795 * 120.21160 * 313.63439 * 16 14 5 18 18 C 1.37733 * 119.92092 * 180.27234 * 17 16 14 19 19 C 1.38632 * 120.35612 * 359.49894 * 18 17 16 20 20 C 1.50691 * 119.78067 * 180.27285 * 19 18 17 21 21 F 1.39902 * 109.47497 * 270.22888 * 20 19 18 22 22 F 1.39894 * 109.47475 * 30.23404 * 20 19 18 23 23 F 1.39904 * 109.47053 * 150.23126 * 20 19 18 24 24 C 1.37974 * 120.42999 * 0.50601 * 19 18 17 25 25 C 1.38925 * 120.07360 * 359.74840 * 24 19 18 26 26 N 1.38891 * 120.18012 * 180.02562 * 25 24 19 27 27 H 1.09001 * 109.47472 * 300.00339 * 1 2 3 28 28 H 1.09007 * 109.47122 * 60.00176 * 1 2 3 29 29 H 1.08999 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47463 * 59.99594 * 3 2 1 31 31 H 1.09003 * 109.46859 * 299.99733 * 3 2 1 32 32 H 1.09002 * 109.46951 * 305.00058 * 4 3 2 33 33 H 1.09003 * 109.47267 * 184.99797 * 4 3 2 34 34 H 0.96997 * 119.99750 * 180.02562 * 9 8 6 35 35 H 1.08003 * 120.03663 * 0.02562 * 17 16 14 36 36 H 1.07992 * 119.82351 * 179.74548 * 18 17 16 37 37 H 1.08004 * 119.95837 * 179.76820 * 24 19 18 38 38 H 0.96999 * 119.99966 * 184.82247 * 26 25 24 39 39 H 0.96995 * 119.99521 * 4.82530 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7972 -1.3344 7 1 3.7728 -1.3146 -2.2249 8 6 4.6392 -1.5132 -0.2729 9 7 4.4985 -2.8186 -0.2213 10 14 5.5666 -0.6196 1.0802 11 1 4.6433 -0.3336 2.2075 12 1 6.6845 -1.4714 1.5597 13 1 6.1093 0.6564 0.5488 14 6 4.2634 1.3329 -2.3200 15 8 4.2348 2.5450 -2.2226 16 6 4.6113 0.7052 -3.6067 17 6 5.5305 -0.3471 -3.6503 18 6 5.8556 -0.9257 -4.8572 19 6 5.2681 -0.4772 -6.0300 20 6 5.6287 -1.1238 -7.3425 21 9 6.7235 -0.4587 -7.9050 22 9 5.9594 -2.4658 -7.1261 23 9 4.5380 -1.0473 -8.2153 24 6 4.3591 0.5604 -6.0039 25 6 4.0221 1.1605 -4.7972 26 7 3.1069 2.2048 -4.7683 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9784 2.1766 0.0902 34 1 4.8759 -3.3181 0.5195 35 1 5.9882 -0.7032 -2.7392 36 1 6.5690 -1.7358 -4.8895 37 1 3.9088 0.9062 -6.9227 38 1 2.9258 2.6681 -3.9355 39 1 2.6488 2.4708 -5.5808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570083166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:34 Heat of formation + Delta-G solvation = -185.629069 kcal Electronic energy + Delta-G solvation = -29573.567292 eV Core-core repulsion = 24874.111633 eV Total energy + Delta-G solvation = -4699.455660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.95622 -47.46855 -47.42210 -39.88427 -38.21744 -37.03497 -35.18975 -34.15909 -32.07020 -31.68430 -29.40313 -28.48114 -26.33605 -25.82712 -24.76068 -22.93919 -22.27888 -21.51056 -19.36234 -18.29546 -18.22792 -18.16715 -17.61082 -16.64498 -16.52268 -15.86770 -15.61409 -15.31889 -14.92948 -14.61592 -14.51052 -14.36087 -14.24969 -13.88404 -13.84288 -13.66038 -13.58704 -13.39939 -13.22296 -13.17417 -12.80413 -12.56148 -12.46369 -11.92653 -11.75963 -11.64628 -11.32020 -10.97624 -10.90854 -10.86761 -10.49507 -10.16833 -9.94319 -9.32393 -9.17912 -8.79468 -8.56152 -7.90903 -7.25408 -6.45148 -4.09469 1.21094 1.94937 2.88702 3.01741 3.17367 3.21429 3.42928 3.89710 4.00807 4.10567 4.17226 4.23823 4.37870 4.40445 4.68365 4.97213 5.22494 5.47968 5.50946 5.53783 5.63938 5.70158 5.74434 5.80340 5.83333 5.96051 5.99694 6.11757 6.26889 6.30105 6.44186 6.66483 6.88384 7.14177 7.24169 7.70171 7.74428 7.97898 8.11665 8.22974 8.85976 9.23024 9.51505 10.64310 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.004312 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.540701 B = 6492.545972 C = 7236.140410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.056 3.944 4 C 0.098 3.902 5 N -0.440 5.440 6 C -0.331 4.331 7 H 0.108 0.892 8 C 0.073 3.927 9 N -0.854 5.854 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.520 3.480 15 O -0.603 6.603 16 C -0.141 4.141 17 C -0.007 4.007 18 C -0.146 4.146 19 C -0.130 4.130 20 C 0.508 3.492 21 F -0.181 7.181 22 F -0.177 7.177 23 F -0.182 7.182 24 C -0.172 4.172 25 C 0.251 3.749 26 N -0.864 5.864 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.275 0.725 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.410 0.590 39 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 4.950 -6.912 8.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.022 4.022 4 C -0.025 4.025 5 N -0.158 5.158 6 C -0.458 4.458 7 H 0.126 0.874 8 C -0.135 4.135 9 N -0.489 5.489 10 Si 0.702 3.298 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.186 1.186 14 C 0.311 3.689 15 O -0.490 6.490 16 C -0.148 4.148 17 C -0.027 4.027 18 C -0.167 4.167 19 C -0.132 4.132 20 C 0.454 3.546 21 F -0.162 7.162 22 F -0.158 7.158 23 F -0.163 7.163 24 C -0.195 4.195 25 C 0.142 3.858 26 N -0.404 5.404 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.171 0.829 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.243 0.757 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.146 5.129 -6.725 8.725 hybrid contribution -0.137 0.484 0.615 0.794 sum -2.283 5.612 -6.109 8.604 Atomic orbital electron populations 1.22667 0.82914 1.02214 0.98716 1.88231 1.17762 1.26420 1.94997 1.22848 0.94726 0.85379 0.99257 1.21808 0.92338 0.99212 0.89171 1.43553 1.55963 1.07295 1.08972 1.19040 1.41759 0.78917 1.06132 0.87440 1.25267 0.95762 0.95102 0.97333 1.69681 1.41297 1.06333 1.31603 0.86989 0.79918 0.80464 0.82458 1.20062 1.21451 1.18619 1.18007 0.80230 0.85915 0.84760 1.90609 1.58997 1.13914 1.85480 1.19531 1.02790 1.00365 0.92144 1.21391 0.93008 0.90375 0.97881 1.20592 1.02733 1.02377 0.90964 1.19630 1.02212 0.99767 0.91606 1.18430 0.74288 0.76494 0.85369 1.93199 1.55508 1.80629 1.86890 1.93184 1.92601 1.35187 1.94837 1.93159 1.54870 1.96093 1.72218 1.19999 1.02876 0.99890 0.96739 1.17424 0.88773 0.87701 0.91853 1.42480 1.46174 1.37053 1.14648 0.95140 0.94926 0.89995 0.93736 0.93526 0.90824 0.89332 0.91472 0.82932 0.85192 0.85400 0.75670 0.77940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.26 10.18 -35.23 -0.36 -7.62 16 3 C 0.06 1.03 6.28 37.16 0.23 1.27 16 4 C 0.10 2.04 4.54 -4.04 -0.02 2.02 16 5 N -0.44 -10.00 2.13 -116.06 -0.25 -10.24 16 6 C -0.33 -8.15 6.61 -15.00 -0.10 -8.25 16 7 H 0.11 2.87 6.95 -52.49 -0.36 2.51 16 8 C 0.07 1.85 5.40 -17.45 -0.09 1.75 16 9 N -0.85 -22.76 13.96 55.50 0.77 -21.98 16 10 Si 0.87 19.65 24.72 -169.99 -4.20 15.45 16 11 H -0.27 -6.02 6.79 56.52 0.38 -5.64 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.26 -5.87 7.01 56.52 0.40 -5.48 16 14 C 0.52 11.44 6.78 -12.56 -0.09 11.36 16 15 O -0.60 -13.66 14.83 5.24 0.08 -13.58 16 16 C -0.14 -2.81 5.15 -104.80 -0.54 -3.35 16 17 C -0.01 -0.14 7.92 -39.18 -0.31 -0.45 16 18 C -0.15 -2.48 9.37 -39.62 -0.37 -2.85 16 19 C -0.13 -2.08 5.46 -104.58 -0.57 -2.65 16 20 C 0.51 7.41 3.36 36.00 0.12 7.53 16 21 F -0.18 -2.59 17.30 2.25 0.04 -2.56 16 22 F -0.18 -2.63 16.45 2.25 0.04 -2.60 16 23 F -0.18 -2.57 16.44 2.25 0.04 -2.53 16 24 C -0.17 -2.68 9.23 -39.42 -0.36 -3.04 16 25 C 0.25 4.36 6.74 -83.59 -0.56 3.80 16 26 N -0.86 -12.91 8.93 32.56 0.29 -12.62 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.46 8.14 -51.92 -0.42 0.03 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.61 3.12 -51.93 -0.16 1.45 16 33 H 0.09 1.75 7.36 -51.93 -0.38 1.37 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.15 3.10 6.71 -52.48 -0.35 2.75 16 36 H 0.13 1.98 7.59 -52.49 -0.40 1.58 16 37 H 0.13 1.67 7.58 -52.48 -0.40 1.27 16 38 H 0.41 6.72 6.51 -40.82 -0.27 6.46 16 39 H 0.39 4.47 8.84 -40.82 -0.36 4.11 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -28.16 337.36 -3.97 -32.14 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -3.96 Total: 12.33 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -1.55 Total: 8.74 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.82 Total: -44.84 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.28 Total: -21.21 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.11 Total: -7.69 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.20 Total: 15.45 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.16 -3.97 -32.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570083166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.494 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds