Wall clock time and date at job start Tue Mar 31 2020 16:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99736 * 2 1 4 4 C 1.53003 * 109.47074 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47174 * 64.99745 * 4 3 2 6 6 C 1.36909 * 120.00038 * 270.00257 * 5 4 3 7 7 H 1.08002 * 119.99843 * 139.08007 * 6 5 4 8 8 C 1.39015 * 119.99720 * 319.08139 * 6 5 4 9 9 N 1.31393 * 119.99691 * 165.42424 * 8 6 5 10 10 Si 1.86796 * 120.00164 * 345.42541 * 8 6 5 11 11 H 1.48500 * 109.47328 * 95.03758 * 10 8 6 12 12 H 1.48504 * 109.46757 * 215.03705 * 10 8 6 13 13 H 1.48496 * 109.47282 * 335.03250 * 10 8 6 14 14 C 1.34775 * 119.99925 * 90.00090 * 5 4 3 15 15 O 1.21637 * 120.00024 * 4.48785 * 14 5 4 16 16 C 1.47328 * 119.99980 * 184.49023 * 14 5 4 17 17 C 1.39795 * 120.21160 * 313.63439 * 16 14 5 18 18 C 1.37733 * 119.92092 * 180.27234 * 17 16 14 19 19 C 1.38632 * 120.35612 * 359.49894 * 18 17 16 20 20 C 1.50691 * 119.78067 * 180.27285 * 19 18 17 21 21 F 1.39902 * 109.47497 * 270.22888 * 20 19 18 22 22 F 1.39894 * 109.47475 * 30.23404 * 20 19 18 23 23 F 1.39904 * 109.47053 * 150.23126 * 20 19 18 24 24 C 1.37974 * 120.42999 * 0.50601 * 19 18 17 25 25 C 1.38925 * 120.07360 * 359.74840 * 24 19 18 26 26 N 1.38891 * 120.18012 * 180.02562 * 25 24 19 27 27 H 1.09001 * 109.47472 * 300.00339 * 1 2 3 28 28 H 1.09007 * 109.47122 * 60.00176 * 1 2 3 29 29 H 1.08999 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47463 * 59.99594 * 3 2 1 31 31 H 1.09003 * 109.46859 * 299.99733 * 3 2 1 32 32 H 1.09002 * 109.46951 * 305.00058 * 4 3 2 33 33 H 1.09003 * 109.47267 * 184.99797 * 4 3 2 34 34 H 0.96997 * 119.99750 * 180.02562 * 9 8 6 35 35 H 1.08003 * 120.03663 * 0.02562 * 17 16 14 36 36 H 1.07992 * 119.82351 * 179.74548 * 18 17 16 37 37 H 1.08004 * 119.95837 * 179.76820 * 24 19 18 38 38 H 0.96999 * 119.99966 * 184.82247 * 26 25 24 39 39 H 0.96995 * 119.99521 * 4.82530 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7972 -1.3344 7 1 3.7728 -1.3146 -2.2249 8 6 4.6392 -1.5132 -0.2729 9 7 4.4985 -2.8186 -0.2213 10 14 5.5666 -0.6196 1.0802 11 1 4.6433 -0.3336 2.2075 12 1 6.6845 -1.4714 1.5597 13 1 6.1093 0.6564 0.5488 14 6 4.2634 1.3329 -2.3200 15 8 4.2348 2.5450 -2.2226 16 6 4.6113 0.7052 -3.6067 17 6 5.5305 -0.3471 -3.6503 18 6 5.8556 -0.9257 -4.8572 19 6 5.2681 -0.4772 -6.0300 20 6 5.6287 -1.1238 -7.3425 21 9 6.7235 -0.4587 -7.9050 22 9 5.9594 -2.4658 -7.1261 23 9 4.5380 -1.0473 -8.2153 24 6 4.3591 0.5604 -6.0039 25 6 4.0221 1.1605 -4.7972 26 7 3.1069 2.2048 -4.7683 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9784 2.1766 0.0902 34 1 4.8759 -3.3181 0.5195 35 1 5.9882 -0.7032 -2.7392 36 1 6.5690 -1.7358 -4.8895 37 1 3.9088 0.9062 -6.9227 38 1 2.9258 2.6681 -3.9355 39 1 2.6488 2.4708 -5.5808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570083166.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:33 Heat of formation + Delta-G solvation = -203.848324 kcal Electronic energy + Delta-G solvation = -29574.357339 eV Core-core repulsion = 24874.111633 eV Total energy + Delta-G solvation = -4700.245706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.12881 -48.63419 -48.58951 -41.44415 -39.70879 -38.51733 -36.86525 -35.54981 -33.93683 -33.12597 -30.91550 -29.80596 -27.68337 -27.25306 -26.46909 -24.41040 -23.66478 -22.90508 -21.05497 -19.56085 -19.44997 -19.38266 -19.22922 -18.26436 -17.92145 -17.40600 -17.05637 -16.69224 -16.50043 -16.19549 -15.97494 -15.56499 -15.49020 -15.33525 -15.04864 -14.86289 -14.85601 -14.75508 -14.74507 -14.53914 -14.44968 -14.03272 -13.98974 -13.56645 -13.25688 -13.10313 -12.75331 -12.60115 -12.43097 -12.27569 -11.98811 -11.74386 -11.66156 -11.10581 -10.65071 -10.45266 -10.03089 -9.72097 -8.56553 -8.38231 -6.03259 -0.18914 0.57698 1.22066 1.33805 1.41537 1.66734 1.79350 2.22480 2.45587 2.68854 2.72071 2.91849 2.94172 3.16997 3.19658 3.48336 3.90586 3.97177 4.10219 4.16212 4.21017 4.36936 4.40683 4.49186 4.54058 4.56497 4.61103 4.73815 4.84276 4.93583 5.02668 5.27143 5.45551 5.47519 5.72089 6.12832 6.25748 6.38381 6.44864 6.92841 7.00128 7.39000 7.70805 8.74918 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.004312 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.540701 B = 6492.545972 C = 7236.140410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.060 3.940 4 C 0.089 3.911 5 N -0.453 5.453 6 C -0.311 4.311 7 H 0.078 0.922 8 C 0.036 3.964 9 N -0.897 5.897 10 Si 0.922 3.078 11 H -0.264 1.264 12 H -0.288 1.288 13 H -0.264 1.264 14 C 0.523 3.477 15 O -0.611 6.611 16 C -0.177 4.177 17 C -0.019 4.019 18 C -0.151 4.151 19 C -0.126 4.126 20 C 0.518 3.482 21 F -0.176 7.176 22 F -0.178 7.178 23 F -0.175 7.175 24 C -0.161 4.161 25 C 0.251 3.749 26 N -0.852 5.852 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.276 0.724 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.161 0.839 38 H 0.405 0.595 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 6.266 -7.970 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.017 4.017 4 C -0.034 4.034 5 N -0.171 5.171 6 C -0.439 4.439 7 H 0.096 0.904 8 C -0.168 4.168 9 N -0.534 5.534 10 Si 0.749 3.251 11 H -0.190 1.190 12 H -0.216 1.216 13 H -0.188 1.188 14 C 0.315 3.685 15 O -0.499 6.499 16 C -0.185 4.185 17 C -0.038 4.038 18 C -0.171 4.171 19 C -0.128 4.128 20 C 0.464 3.536 21 F -0.158 7.158 22 F -0.159 7.159 23 F -0.156 7.156 24 C -0.184 4.184 25 C 0.141 3.859 26 N -0.392 5.392 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.178 0.822 38 H 0.237 0.763 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.847 6.477 -7.806 10.535 hybrid contribution 0.015 0.150 0.794 0.808 sum -2.832 6.628 -7.012 10.055 Atomic orbital electron populations 1.22852 0.80514 1.03059 1.00449 1.88161 1.20561 1.27594 1.95351 1.22817 0.92928 0.85147 1.00840 1.21949 0.94438 0.99072 0.87910 1.43609 1.56931 1.06604 1.09962 1.18671 1.40676 0.79696 1.04893 0.90403 1.25717 0.96459 0.95443 0.99143 1.69758 1.43320 1.07543 1.32770 0.86216 0.78935 0.79254 0.80704 1.19049 1.21558 1.18804 1.18339 0.79123 0.85836 0.85221 1.90582 1.59226 1.14212 1.85848 1.19551 1.04821 1.01891 0.92266 1.21217 0.93602 0.90905 0.98063 1.20674 1.03213 1.02614 0.90642 1.19814 1.01514 0.99496 0.91986 1.18118 0.74491 0.76274 0.84729 1.93214 1.55308 1.80541 1.86706 1.93190 1.92618 1.35277 1.94845 1.93177 1.54567 1.96049 1.71852 1.20311 1.01992 0.98936 0.97191 1.17522 0.88783 0.88047 0.91540 1.42437 1.45436 1.36002 1.15356 0.92553 0.93906 0.89723 0.90363 0.93492 0.91887 0.88492 0.91422 0.85081 0.83927 0.82188 0.76316 0.75723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -15.95 10.18 -148.98 -1.52 -17.47 16 3 C 0.06 2.15 6.28 71.98 0.45 2.60 16 4 C 0.09 3.66 4.54 86.38 0.39 4.05 16 5 N -0.45 -20.74 2.13 -639.34 -1.36 -22.11 16 6 C -0.31 -15.76 6.61 84.09 0.56 -15.20 16 7 H 0.08 4.36 6.95 -2.91 -0.02 4.34 16 8 C 0.04 1.87 5.40 84.94 0.46 2.33 16 9 N -0.90 -49.25 13.96 21.68 0.30 -48.95 16 10 Si 0.92 41.09 24.72 68.60 1.70 42.78 16 11 H -0.26 -11.26 6.79 99.48 0.68 -10.58 16 12 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.26 -11.66 7.01 99.48 0.70 -10.96 16 14 C 0.52 23.09 6.78 86.64 0.59 23.68 16 15 O -0.61 -27.37 14.83 -4.15 -0.06 -27.43 16 16 C -0.18 -7.11 5.15 -19.98 -0.10 -7.22 16 17 C -0.02 -0.73 7.92 22.53 0.18 -0.55 16 18 C -0.15 -5.07 9.37 22.24 0.21 -4.86 16 19 C -0.13 -3.78 5.46 -19.84 -0.11 -3.89 16 20 C 0.52 13.84 3.36 71.23 0.24 14.08 16 21 F -0.18 -4.60 17.30 44.97 0.78 -3.83 16 22 F -0.18 -4.96 16.45 44.97 0.74 -4.22 16 23 F -0.18 -4.41 16.44 44.97 0.74 -3.67 16 24 C -0.16 -4.62 9.23 22.37 0.21 -4.42 16 25 C 0.25 8.36 6.74 38.72 0.26 8.62 16 26 N -0.85 -23.78 8.93 -50.91 -0.45 -24.23 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 2.72 3.12 -2.39 -0.01 2.71 16 33 H 0.10 3.75 7.36 -2.39 -0.02 3.74 16 34 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.13 5.62 6.71 -2.91 -0.02 5.60 16 36 H 0.14 4.30 7.59 -2.91 -0.02 4.28 16 37 H 0.16 3.52 7.58 -2.91 -0.02 3.50 16 38 H 0.41 12.67 6.51 -92.71 -0.60 12.07 16 39 H 0.41 8.18 8.84 -92.71 -0.82 7.37 16 Total: -1.00 -60.86 337.36 5.12 -55.74 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.32 Total: 32.11 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 4.58 Total: 21.27 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -1.51 Total: -95.29 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.58 Total: -44.90 kcal Atomic # 9 Polarization: -13.98 SS G_CDS: 2.26 Total: -11.72 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.70 Total: 42.78 kcal Total: -60.86 5.12 -55.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570083166.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.109 kcal (2) G-P(sol) polarization free energy of solvation -60.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds