Wall clock time and date at job start Tue Mar 31 2020 16:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36539 * 127.14574 * 2 1 4 4 S 1.76198 * 126.48435 * 359.97438 * 3 2 1 5 5 N 1.31280 * 107.03303 * 180.23117 * 3 2 1 6 6 N 1.28529 * 109.85850 * 359.77008 * 5 3 2 7 7 C 1.30296 * 110.07796 * 359.97438 * 6 5 3 8 8 C 1.50698 * 126.34350 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47374 * 90.02673 * 8 7 6 10 10 C 1.34769 * 120.00571 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99500 * 359.97438 * 10 9 8 12 12 C 1.50691 * 120.00547 * 179.97438 * 10 9 8 13 13 H 1.09002 * 109.47184 * 300.00058 * 12 10 9 14 14 C 1.50705 * 109.47317 * 59.99870 * 12 10 9 15 15 H 1.08006 * 119.99589 * 33.93802 * 14 12 10 16 16 C 1.37873 * 120.00193 * 213.94231 * 14 12 10 17 17 N 1.31512 * 119.99996 * 6.39114 * 16 14 12 18 18 Si 1.86806 * 119.99913 * 186.38982 * 16 14 12 19 19 H 1.48500 * 109.46917 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46939 * 119.99823 * 18 16 14 21 21 H 1.48499 * 109.47254 * 240.00065 * 18 16 14 22 22 C 1.50705 * 109.47595 * 179.97438 * 12 10 9 23 23 C 1.38238 * 119.99775 * 293.84942 * 22 12 10 24 24 C 1.38232 * 119.99949 * 179.80822 * 23 22 12 25 25 C 1.38235 * 119.99801 * 0.39399 * 24 23 22 26 26 C 1.38237 * 120.00415 * 359.86082 * 25 24 23 27 27 C 1.38237 * 119.99928 * 114.11879 * 22 12 10 28 28 H 1.09000 * 109.47112 * 270.15301 * 1 2 3 29 29 H 1.08995 * 109.47325 * 30.15217 * 1 2 3 30 30 H 1.09001 * 109.47339 * 150.15077 * 1 2 3 31 31 H 1.41000 * 100.00186 * 270.25169 * 4 3 2 32 32 H 1.08998 * 109.46974 * 330.02816 * 8 7 6 33 33 H 1.09002 * 109.47104 * 210.02864 * 8 7 6 34 34 H 0.97002 * 119.99685 * 0.02562 * 9 8 7 35 35 H 0.97004 * 119.99646 * 179.97438 * 17 16 14 36 36 H 1.08000 * 119.99939 * 359.97438 * 23 22 12 37 37 H 1.08000 * 120.00438 * 180.23356 * 24 23 22 38 38 H 1.08000 * 120.00277 * 179.83027 * 25 24 23 39 39 H 1.07996 * 120.00470 * 179.97438 * 26 25 24 40 40 H 1.07997 * 119.99981 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2894 1.0884 0.0000 4 16 1.7928 2.7789 -0.0006 5 7 3.5221 0.6369 -0.0051 6 7 3.5165 -0.6483 -0.0033 7 6 2.2907 -1.0902 0.0034 8 6 1.8622 -2.5350 0.0070 9 7 1.7299 -3.0018 1.3893 10 6 1.3549 -4.2720 1.6387 11 8 1.1264 -5.0285 0.7187 12 6 1.2193 -4.7523 3.0606 13 1 2.1784 -4.6562 3.5696 14 6 0.1858 -3.9205 3.7755 15 1 -0.6709 -3.5435 3.2366 16 6 0.3339 -3.6408 5.1174 17 7 1.4356 -3.9909 5.7444 18 14 -1.0304 -2.7643 6.0449 19 1 -2.1561 -2.4814 5.1186 20 1 -1.5082 -3.6275 7.1547 21 1 -0.5117 -1.4878 6.5987 22 6 0.7907 -6.1971 3.0642 23 6 -0.4581 -6.5487 2.5869 24 6 -0.8498 -7.8744 2.5866 25 6 0.0042 -8.8475 3.0710 26 6 1.2510 -8.4953 3.5531 27 6 1.6442 -7.1700 3.5499 28 1 -0.3633 0.0027 1.0277 29 1 -0.3634 0.8886 -0.5162 30 1 -0.3634 -0.8913 -0.5115 31 1 1.7184 3.0118 -1.3893 32 1 2.6097 -3.1369 -0.5097 33 1 0.9033 -2.6308 -0.5022 34 1 1.9123 -2.3966 2.1251 35 1 1.5399 -3.7938 6.6885 36 1 -1.1267 -5.7880 2.2119 37 1 -1.8239 -8.1496 2.2102 38 1 -0.3028 -9.8829 3.0732 39 1 1.9180 -9.2555 3.9320 40 1 2.6183 -6.8948 3.9264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627337434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:18 Heat of formation + Delta-G solvation = 71.618395 kcal Electronic energy + Delta-G solvation = -25552.334821 eV Core-core repulsion = 21880.936611 eV Total energy + Delta-G solvation = -3671.398210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.15619 -39.25721 -37.82550 -35.40022 -34.42005 -33.72497 -31.26155 -30.95469 -29.98558 -28.12773 -27.69874 -26.21275 -23.86398 -23.01604 -21.66376 -21.37587 -20.78591 -19.47600 -18.45802 -17.18883 -16.79275 -16.67806 -16.30066 -15.91127 -15.46003 -15.09022 -14.64970 -14.38068 -14.14822 -13.92372 -13.75700 -13.66078 -13.01367 -12.80305 -12.65084 -12.41258 -12.34727 -11.95540 -11.72391 -11.65099 -11.54090 -11.13976 -11.07910 -10.74306 -10.46646 -10.41514 -10.33647 -10.08423 -9.55822 -9.51592 -8.87831 -8.74142 -8.69289 -8.60059 -7.99543 -7.67580 -6.34828 -4.40962 0.68130 1.06575 2.01094 2.29637 2.33216 2.36450 2.63806 3.13071 3.22249 3.23821 3.55650 3.85589 4.12443 4.21498 4.32684 4.69301 4.77452 4.82612 5.03230 5.17056 5.18078 5.50978 5.65324 5.68365 5.72631 5.74815 5.85320 6.12758 6.22149 6.36566 6.44297 6.54095 6.81356 6.89683 6.91684 7.13611 7.32567 7.38929 7.54446 7.69283 7.89297 7.99228 8.16156 8.37080 8.62279 9.05170 9.25032 10.73827 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.003523 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.912762 B = 7945.566351 C = 9179.481834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.452 5.452 3 C 0.139 3.861 4 S -0.004 6.004 5 N -0.238 5.238 6 N -0.272 5.272 7 C 0.193 3.807 8 C 0.208 3.792 9 N -0.726 5.726 10 C 0.534 3.466 11 O -0.563 6.563 12 C 0.050 3.950 13 H 0.095 0.905 14 C -0.517 4.517 15 H 0.062 0.938 16 C 0.076 3.924 17 N -0.876 5.876 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.282 1.282 22 C -0.013 4.013 23 C -0.085 4.085 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.131 4.131 27 C -0.119 4.119 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.410 0.590 35 H 0.268 0.732 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 7.403 -9.498 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.144 5.144 3 C -0.235 4.235 4 S 0.146 5.854 5 N -0.084 5.084 6 N -0.116 5.116 7 C -0.076 4.076 8 C 0.082 3.918 9 N -0.382 5.382 10 C 0.324 3.676 11 O -0.441 6.441 12 C 0.029 3.971 13 H 0.112 0.888 14 C -0.555 4.555 15 H 0.080 0.920 16 C -0.130 4.130 17 N -0.511 5.511 18 Si 0.723 3.277 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.208 1.208 22 C -0.014 4.014 23 C -0.103 4.103 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.149 4.149 27 C -0.137 4.137 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.245 0.755 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.439 7.724 -9.752 12.677 hybrid contribution -1.831 -0.037 0.145 1.838 sum -4.270 7.686 -9.607 13.023 Atomic orbital electron populations 1.22303 0.74240 1.05360 1.05789 1.46996 1.09495 1.05781 1.52117 1.25901 0.89867 0.94364 1.13410 1.87111 1.88165 0.98046 1.12092 1.74812 1.16385 1.03008 1.14154 1.74202 1.17125 1.02846 1.17395 1.25296 0.86995 0.92222 1.03087 1.19443 1.02121 0.82808 0.87449 1.45936 1.72073 1.14244 1.05907 1.21718 0.73003 0.79719 0.93131 1.90604 1.50986 1.54963 1.47595 1.18136 1.01554 0.89498 0.87917 0.88758 1.20660 1.07488 1.32939 0.94405 0.91960 1.24959 0.95462 0.94877 0.97653 1.69880 1.24797 1.45574 1.10837 0.86473 0.81985 0.79218 0.80058 1.19521 1.20580 1.20766 1.20030 0.93026 0.95385 0.92936 1.20810 0.96211 0.94952 0.98318 1.20957 0.99024 0.93637 1.01670 1.20813 0.95109 0.98244 1.02434 1.20917 0.96492 0.96060 1.01471 1.21021 0.99632 0.92461 1.00612 0.88421 0.88624 0.88374 0.93564 0.88151 0.89989 0.75471 0.92222 0.87116 0.87575 0.87677 0.87485 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.91 59.84 0.65 1.18 16 2 N -0.45 -5.46 3.21 -120.91 -0.39 -5.85 16 3 C 0.14 1.83 8.37 -88.34 -0.74 1.09 16 4 S 0.00 -0.04 25.78 -107.50 -2.77 -2.81 16 5 N -0.24 -3.87 12.23 30.68 0.38 -3.50 16 6 N -0.27 -4.58 12.17 33.00 0.40 -4.18 16 7 C 0.19 2.77 7.44 -153.99 -1.15 1.62 16 8 C 0.21 3.00 6.04 -5.20 -0.03 2.97 16 9 N -0.73 -12.65 5.45 -61.48 -0.33 -12.99 16 10 C 0.53 11.10 7.04 -10.99 -0.08 11.02 16 11 O -0.56 -12.66 15.42 5.55 0.09 -12.57 16 12 C 0.05 1.14 2.44 -94.08 -0.23 0.91 16 13 H 0.09 2.32 7.00 -51.93 -0.36 1.96 16 14 C -0.52 -12.28 7.46 -34.44 -0.26 -12.54 16 15 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 16 C 0.08 1.86 5.45 -17.82 -0.10 1.77 16 17 N -0.88 -22.64 12.78 55.43 0.71 -21.93 16 18 Si 0.90 19.33 29.54 -169.99 -5.02 14.31 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.01 -0.29 4.30 -104.62 -0.45 -0.74 16 23 C -0.08 -1.82 8.31 -39.58 -0.33 -2.15 16 24 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 25 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 26 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 27 C -0.12 -2.53 9.67 -39.58 -0.38 -2.92 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 0.53 7.86 -51.93 -0.41 0.13 16 30 H 0.10 0.69 7.25 -51.93 -0.38 0.31 16 31 H 0.10 0.69 9.55 96.90 0.93 1.62 16 32 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.05 7.26 -51.93 -0.38 0.67 16 34 H 0.41 7.31 8.35 -40.82 -0.34 6.97 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.11 2.36 7.89 -52.49 -0.41 1.95 16 37 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.11 2.33 7.96 -52.49 -0.42 1.91 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -30.25 365.20 -9.15 -39.40 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -3.43 Total: 11.27 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -4.28 Total: -6.66 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.76 Total: -48.44 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.77 Total: -2.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.25 -9.15 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627337434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.022 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds