Wall clock time and date at job start Tue Mar 31 2020 16:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36539 * 127.14574 * 2 1 4 4 S 1.76198 * 126.48435 * 359.97438 * 3 2 1 5 5 N 1.31280 * 107.03303 * 180.23117 * 3 2 1 6 6 N 1.28529 * 109.85850 * 359.77008 * 5 3 2 7 7 C 1.30296 * 110.07796 * 359.97438 * 6 5 3 8 8 C 1.50698 * 126.34350 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47374 * 90.02673 * 8 7 6 10 10 C 1.34769 * 120.00571 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99500 * 359.97438 * 10 9 8 12 12 C 1.50691 * 120.00547 * 179.97438 * 10 9 8 13 13 H 1.09002 * 109.47184 * 300.00058 * 12 10 9 14 14 C 1.50705 * 109.47317 * 59.99870 * 12 10 9 15 15 H 1.08006 * 119.99589 * 33.93802 * 14 12 10 16 16 C 1.37873 * 120.00193 * 213.94231 * 14 12 10 17 17 N 1.31512 * 119.99996 * 6.39114 * 16 14 12 18 18 Si 1.86806 * 119.99913 * 186.38982 * 16 14 12 19 19 H 1.48500 * 109.46917 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46939 * 119.99823 * 18 16 14 21 21 H 1.48499 * 109.47254 * 240.00065 * 18 16 14 22 22 C 1.50705 * 109.47595 * 179.97438 * 12 10 9 23 23 C 1.38238 * 119.99775 * 293.84942 * 22 12 10 24 24 C 1.38232 * 119.99949 * 179.80822 * 23 22 12 25 25 C 1.38235 * 119.99801 * 0.39399 * 24 23 22 26 26 C 1.38237 * 120.00415 * 359.86082 * 25 24 23 27 27 C 1.38237 * 119.99928 * 114.11879 * 22 12 10 28 28 H 1.09000 * 109.47112 * 270.15301 * 1 2 3 29 29 H 1.08995 * 109.47325 * 30.15217 * 1 2 3 30 30 H 1.09001 * 109.47339 * 150.15077 * 1 2 3 31 31 H 1.41000 * 100.00186 * 270.25169 * 4 3 2 32 32 H 1.08998 * 109.46974 * 330.02816 * 8 7 6 33 33 H 1.09002 * 109.47104 * 210.02864 * 8 7 6 34 34 H 0.97002 * 119.99685 * 0.02562 * 9 8 7 35 35 H 0.97004 * 119.99646 * 179.97438 * 17 16 14 36 36 H 1.08000 * 119.99939 * 359.97438 * 23 22 12 37 37 H 1.08000 * 120.00438 * 180.23356 * 24 23 22 38 38 H 1.08000 * 120.00277 * 179.83027 * 25 24 23 39 39 H 1.07996 * 120.00470 * 179.97438 * 26 25 24 40 40 H 1.07997 * 119.99981 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2894 1.0884 0.0000 4 16 1.7928 2.7789 -0.0006 5 7 3.5221 0.6369 -0.0051 6 7 3.5165 -0.6483 -0.0033 7 6 2.2907 -1.0902 0.0034 8 6 1.8622 -2.5350 0.0070 9 7 1.7299 -3.0018 1.3893 10 6 1.3549 -4.2720 1.6387 11 8 1.1264 -5.0285 0.7187 12 6 1.2193 -4.7523 3.0606 13 1 2.1784 -4.6562 3.5696 14 6 0.1858 -3.9205 3.7755 15 1 -0.6709 -3.5435 3.2366 16 6 0.3339 -3.6408 5.1174 17 7 1.4356 -3.9909 5.7444 18 14 -1.0304 -2.7643 6.0449 19 1 -2.1561 -2.4814 5.1186 20 1 -1.5082 -3.6275 7.1547 21 1 -0.5117 -1.4878 6.5987 22 6 0.7907 -6.1971 3.0642 23 6 -0.4581 -6.5487 2.5869 24 6 -0.8498 -7.8744 2.5866 25 6 0.0042 -8.8475 3.0710 26 6 1.2510 -8.4953 3.5531 27 6 1.6442 -7.1700 3.5499 28 1 -0.3633 0.0027 1.0277 29 1 -0.3634 0.8886 -0.5162 30 1 -0.3634 -0.8913 -0.5115 31 1 1.7184 3.0118 -1.3893 32 1 2.6097 -3.1369 -0.5097 33 1 0.9033 -2.6308 -0.5022 34 1 1.9123 -2.3966 2.1251 35 1 1.5399 -3.7938 6.6885 36 1 -1.1267 -5.7880 2.2119 37 1 -1.8239 -8.1496 2.2102 38 1 -0.3028 -9.8829 3.0732 39 1 1.9180 -9.2555 3.9320 40 1 2.6183 -6.8948 3.9264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627337434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:17 Heat of formation + Delta-G solvation = 53.966999 kcal Electronic energy + Delta-G solvation = -25553.100243 eV Core-core repulsion = 21880.936611 eV Total energy + Delta-G solvation = -3672.163632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.21885 -40.87544 -39.36014 -36.47300 -35.73933 -35.51062 -32.93583 -32.23533 -31.51999 -29.47675 -28.71942 -27.59768 -25.61527 -24.03295 -23.20586 -22.69303 -22.10237 -21.05774 -19.34082 -18.73108 -18.13298 -17.85889 -17.64537 -17.41218 -16.77654 -16.37972 -16.17671 -15.78908 -15.60253 -15.33217 -15.05575 -14.51144 -14.40995 -14.19586 -13.97046 -13.92905 -13.59678 -13.30374 -13.26752 -12.96094 -12.88286 -12.76451 -12.56104 -12.18293 -11.94880 -11.81056 -11.66040 -11.34306 -11.26218 -10.80119 -10.67223 -10.33985 -10.08458 -9.54361 -9.47622 -9.25902 -8.21932 -6.32335 -0.16288 0.07751 0.76856 0.80909 1.13776 1.37649 1.41009 1.45220 1.54075 1.69423 1.88993 2.41241 2.51114 2.96088 3.08787 3.28311 3.52780 3.66120 4.08044 4.23902 4.25819 4.31924 4.34980 4.44015 4.53045 4.53284 4.58287 4.64999 4.75687 4.89621 4.98356 5.13935 5.37047 5.39110 5.45399 5.47835 5.64708 5.80431 5.83842 5.94513 6.23531 6.40421 6.57796 6.75397 7.27599 7.34335 7.42526 8.86777 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.003523 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.912762 B = 7945.566351 C = 9179.481834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.444 5.444 3 C 0.145 3.855 4 S 0.010 5.990 5 N -0.280 5.280 6 N -0.307 5.307 7 C 0.187 3.813 8 C 0.215 3.785 9 N -0.717 5.717 10 C 0.538 3.462 11 O -0.581 6.581 12 C 0.049 3.951 13 H 0.065 0.935 14 C -0.511 4.511 15 H 0.062 0.938 16 C 0.032 3.968 17 N -0.909 5.909 18 Si 0.951 3.049 19 H -0.260 1.260 20 H -0.287 1.287 21 H -0.279 1.279 22 C -0.040 4.040 23 C -0.106 4.106 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.131 4.131 27 C -0.146 4.146 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.407 0.593 35 H 0.266 0.734 36 H 0.103 0.897 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 7.508 -10.373 14.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.136 5.136 3 C -0.231 4.231 4 S 0.159 5.841 5 N -0.125 5.125 6 N -0.151 5.151 7 C -0.083 4.083 8 C 0.089 3.911 9 N -0.370 5.370 10 C 0.327 3.673 11 O -0.462 6.462 12 C 0.028 3.972 13 H 0.083 0.917 14 C -0.549 4.549 15 H 0.080 0.920 16 C -0.169 4.169 17 N -0.546 5.546 18 Si 0.777 3.223 19 H -0.184 1.184 20 H -0.213 1.213 21 H -0.205 1.205 22 C -0.041 4.041 23 C -0.125 4.125 24 C -0.152 4.152 25 C -0.161 4.161 26 C -0.149 4.149 27 C -0.164 4.164 28 H 0.117 0.883 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.242 0.758 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.679 7.852 -10.650 14.035 hybrid contribution -1.156 -0.028 0.337 1.204 sum -5.835 7.824 -10.313 14.200 Atomic orbital electron populations 1.22687 0.71812 1.07561 1.06526 1.47196 1.10770 1.04779 1.50828 1.26486 0.89339 0.96147 1.11082 1.87080 1.87396 0.95073 1.14509 1.74734 1.18411 1.02901 1.16444 1.74087 1.18774 1.03639 1.18558 1.25063 0.86970 0.92499 1.03741 1.19491 1.03179 0.82969 0.85466 1.45790 1.70705 1.13088 1.07378 1.21306 0.73288 0.80550 0.92154 1.90578 1.52199 1.55684 1.47696 1.18032 0.99887 0.90429 0.88832 0.91662 1.20784 1.07300 1.32344 0.94462 0.91982 1.25614 0.97088 0.95770 0.98467 1.70000 1.26436 1.47310 1.10857 0.85603 0.79941 0.78054 0.78730 1.18357 1.21340 1.20503 1.20110 0.94142 0.95317 0.94554 1.20877 0.95816 0.96309 0.99466 1.21352 1.00524 0.92638 1.00684 1.21284 0.94192 1.00064 1.00555 1.21291 0.97532 0.95465 1.00585 1.21156 0.99560 0.93896 1.01787 0.88332 0.85633 0.87110 0.90576 0.88535 0.87742 0.75771 0.92488 0.87897 0.84407 0.83632 0.84510 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.76 10.91 127.77 1.39 2.15 16 2 N -0.44 -10.19 3.21 -536.46 -1.72 -11.91 16 3 C 0.15 3.65 8.37 179.55 1.50 5.15 16 4 S 0.01 0.17 25.78 -56.49 -1.46 -1.28 16 5 N -0.28 -9.16 12.23 -56.85 -0.70 -9.86 16 6 N -0.31 -10.56 12.17 -49.52 -0.60 -11.16 16 7 C 0.19 5.36 7.44 137.63 1.02 6.38 16 8 C 0.21 6.16 6.04 85.63 0.52 6.68 16 9 N -0.72 -25.46 5.45 -466.81 -2.54 -28.00 16 10 C 0.54 22.90 7.04 87.66 0.62 23.52 16 11 O -0.58 -26.49 15.42 -3.06 -0.05 -26.53 16 12 C 0.05 2.34 2.44 -13.03 -0.03 2.31 16 13 H 0.07 3.42 7.00 -2.39 -0.02 3.41 16 14 C -0.51 -24.73 7.46 25.60 0.19 -24.53 16 15 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 16 C 0.03 1.61 5.45 84.65 0.46 2.07 16 17 N -0.91 -48.50 12.78 21.45 0.27 -48.23 16 18 Si 0.95 39.76 29.54 68.60 2.03 41.79 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 20 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 22 C -0.04 -1.86 4.30 -19.86 -0.09 -1.94 16 23 C -0.11 -4.55 8.31 22.27 0.19 -4.36 16 24 C -0.13 -4.78 10.05 22.27 0.22 -4.56 16 25 C -0.14 -4.72 10.05 22.27 0.22 -4.50 16 26 C -0.13 -4.72 10.05 22.27 0.22 -4.49 16 27 C -0.15 -6.32 9.67 22.27 0.22 -6.11 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.13 0.98 7.86 -2.39 -0.02 0.96 16 30 H 0.11 1.28 7.25 -2.39 -0.02 1.26 16 31 H 0.13 1.36 9.55 73.80 0.70 2.07 16 32 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.10 2.54 7.26 -2.39 -0.02 2.53 16 34 H 0.41 14.99 8.35 -92.71 -0.77 14.22 16 35 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 36 H 0.10 4.42 7.89 -2.91 -0.02 4.40 16 37 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.10 4.52 7.96 -2.91 -0.02 4.50 16 Total: -1.00 -67.39 365.20 2.93 -64.46 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 1.03 Total: 32.95 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 6.66 Total: -2.23 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -5.29 Total: -109.15 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.53 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.46 Total: -1.28 kcal Total: -67.39 2.93 -64.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627337434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.429 kcal (2) G-P(sol) polarization free energy of solvation -67.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds