Wall clock time and date at job start Tue Mar 31 2020 16:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34968 * 125.96520 * 2 1 4 4 C 1.35239 * 107.86513 * 180.02562 * 3 2 1 5 5 C 1.40445 * 107.86371 * 0.02562 * 4 3 2 6 6 N 1.39985 * 125.97674 * 179.97438 * 5 4 3 7 7 C 1.39895 * 120.00360 * 351.34161 * 6 5 4 8 8 C 1.38752 * 120.09768 * 331.25367 * 7 6 5 9 9 C 1.38207 * 119.99245 * 180.27803 * 8 7 6 10 10 C 1.38295 * 120.19352 * 359.71441 * 9 8 7 11 11 C 1.38231 * 120.20725 * 0.02562 * 10 9 8 12 12 C 1.38675 * 120.00551 * 359.97438 * 11 10 9 13 13 N 1.40123 * 120.09838 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00185 * 335.49683 * 13 12 11 15 15 O 1.21295 * 119.99650 * 354.71493 * 14 13 12 16 16 C 1.50701 * 119.99973 * 174.43551 * 14 13 12 17 17 S 1.81001 * 109.47000 * 180.27619 * 16 14 13 18 18 C 1.76200 * 100.00008 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99950 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00231 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99583 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00270 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46838 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.46934 * 120.00033 * 22 20 18 25 25 H 1.48497 * 109.46718 * 240.00266 * 22 20 18 26 26 N 1.31243 * 108.04318 * 0.21982 * 5 4 3 27 27 H 1.08994 * 109.47322 * 90.00223 * 1 2 3 28 28 H 1.09010 * 109.47162 * 210.00402 * 1 2 3 29 29 H 1.09001 * 109.47223 * 329.99570 * 1 2 3 30 30 H 1.08000 * 126.07258 * 359.97438 * 3 2 1 31 31 H 1.08006 * 126.06890 * 179.97438 * 4 3 2 32 32 H 0.97002 * 120.00121 * 171.33691 * 6 5 4 33 33 H 1.07999 * 120.00333 * 359.97185 * 8 7 6 34 34 H 1.07998 * 119.90341 * 179.70082 * 9 8 7 35 35 H 1.08004 * 119.89279 * 180.02562 * 10 9 8 36 36 H 1.08000 * 119.99783 * 180.02562 * 11 10 9 37 37 H 0.96996 * 120.00237 * 155.50281 * 13 12 11 38 38 H 1.08993 * 109.47225 * 300.27355 * 16 14 13 39 39 H 1.09004 * 109.47028 * 60.28037 * 16 14 13 40 40 H 0.97007 * 120.00001 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2576 1.0924 0.0000 4 6 3.5431 0.6722 -0.0006 5 6 3.5373 -0.7322 -0.0015 6 7 4.6667 -1.5592 -0.0029 7 6 5.9386 -1.0061 -0.1857 8 6 6.0914 0.1577 -0.9257 9 6 7.3496 0.6991 -1.1098 10 6 8.4582 0.0876 -0.5534 11 6 8.3147 -1.0691 0.1898 12 6 7.0562 -1.6196 0.3799 13 7 6.9084 -2.7918 1.1334 14 6 7.9418 -3.6481 1.2572 15 8 8.9676 -3.4539 0.6398 16 6 7.8250 -4.8433 2.1676 17 16 9.3684 -5.7879 2.1241 18 6 8.9638 -7.0868 3.2439 19 1 7.9920 -7.1110 3.7144 20 6 9.8937 -8.0794 3.5206 21 7 11.0780 -8.0501 2.9468 22 14 9.4646 -9.4568 4.7072 23 1 8.0823 -9.2613 5.2133 24 1 9.5550 -10.7617 4.0044 25 1 10.4155 -9.4417 5.8477 26 7 2.2878 -1.1336 -0.0063 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.9246 2.1198 -0.0004 31 1 4.4188 1.3045 -0.0011 32 1 4.5675 -2.5159 0.1231 33 1 5.2279 0.6376 -1.3619 34 1 7.4675 1.6023 -1.6901 35 1 9.4391 0.5151 -0.7000 36 1 9.1827 -1.5436 0.6232 37 1 6.0624 -2.9870 1.5658 38 1 7.6337 -4.5067 3.1864 39 1 7.0025 -5.4757 1.8332 40 1 11.7281 -8.7436 3.1404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644458557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:21 Heat of formation + Delta-G solvation = 95.789917 kcal Electronic energy + Delta-G solvation = -24398.001485 eV Core-core repulsion = 20727.651430 eV Total energy + Delta-G solvation = -3670.350054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53321 -40.43040 -38.52164 -35.88176 -34.59438 -32.62122 -32.45976 -30.88287 -30.44746 -29.10381 -28.06593 -26.48672 -25.51795 -23.24503 -22.46395 -21.31035 -20.54566 -20.25807 -18.29571 -17.65064 -17.53677 -16.91862 -16.25123 -16.14421 -15.78791 -15.18943 -14.83497 -14.75133 -14.48848 -14.23799 -14.08226 -13.67119 -13.46281 -13.38390 -13.15037 -12.94688 -12.75280 -12.60733 -12.09275 -11.82966 -11.49586 -11.15516 -11.08992 -11.04468 -10.81687 -10.78901 -10.38855 -9.85280 -9.43746 -9.33713 -9.10338 -8.85653 -8.29906 -8.22008 -7.42717 -6.54801 -6.25123 -3.96280 1.25903 1.40394 1.70483 2.01544 2.73995 2.86167 2.91029 3.15091 3.20166 3.26469 3.30758 3.59720 3.89808 4.16613 4.29438 4.48166 4.77514 4.81936 4.93278 5.01929 5.06668 5.10497 5.15991 5.22809 5.40889 5.41997 5.49700 5.54281 5.65225 5.78341 5.90613 5.98447 6.05661 6.26487 6.28980 6.52776 6.66341 6.71374 6.81078 7.14683 7.24213 7.47426 7.57237 7.72468 8.32220 8.37690 9.20588 10.82324 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.002454 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.003662 B =11408.578541 C =13117.819258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.377 5.377 3 C 0.075 3.925 4 C -0.302 4.302 5 C 0.330 3.670 6 N -0.650 5.650 7 C 0.152 3.848 8 C -0.150 4.150 9 C -0.114 4.114 10 C -0.126 4.126 11 C -0.102 4.102 12 C 0.123 3.877 13 N -0.677 5.677 14 C 0.532 3.468 15 O -0.493 6.493 16 C -0.155 4.155 17 S -0.055 6.055 18 C -0.536 4.536 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.920 3.080 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.279 1.279 26 N -0.341 5.341 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.176 0.824 31 H 0.158 0.842 32 H 0.411 0.589 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.153 0.847 37 H 0.406 0.594 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.275 21.650 -6.392 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.160 5.160 3 C -0.071 4.071 4 C -0.334 4.334 5 C 0.073 3.927 6 N -0.280 5.280 7 C 0.052 3.948 8 C -0.171 4.171 9 C -0.134 4.134 10 C -0.146 4.146 11 C -0.123 4.123 12 C 0.024 3.976 13 N -0.322 5.322 14 C 0.320 3.680 15 O -0.365 6.365 16 C -0.305 4.305 17 S 0.171 5.829 18 C -0.684 4.684 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.205 1.205 26 N -0.172 5.172 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.193 0.807 31 H 0.176 0.824 32 H 0.248 0.752 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.170 0.830 37 H 0.241 0.759 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.333 20.938 -7.398 28.796 hybrid contribution -1.529 -0.948 1.716 2.486 sum -19.863 19.989 -5.683 28.747 Atomic orbital electron populations 1.21808 0.74058 1.04405 1.03207 1.48028 1.06162 1.03016 1.58747 1.22471 0.90581 0.93575 1.00518 1.21473 0.97698 0.93214 1.20976 1.19104 0.86845 0.90069 0.96719 1.40917 1.00334 1.08419 1.78350 1.17277 0.82405 0.96893 0.98206 1.20989 0.98564 0.97091 1.00503 1.20911 0.91823 1.00160 1.00464 1.21021 0.98831 0.95672 0.99077 1.21400 0.96623 0.95051 0.99235 1.17563 0.93559 0.89413 0.97019 1.43605 1.16627 1.20335 1.51679 1.20514 0.82671 0.83053 0.81772 1.90668 1.28641 1.73179 1.44029 1.23559 1.08572 0.97658 1.00758 1.85401 1.10659 1.26544 1.60277 1.22895 1.03531 1.11482 1.30502 0.90801 1.24999 0.94459 0.97768 0.96364 1.70024 1.05150 1.33772 1.41259 0.86100 0.78557 0.80733 0.80020 1.19607 1.20535 1.20533 1.77447 0.99298 1.07151 1.33304 0.90957 0.89378 0.89508 0.80724 0.82424 0.75193 0.84528 0.85940 0.85737 0.82955 0.75908 0.88737 0.88895 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.48 11.47 59.85 0.69 1.17 16 2 N -0.38 -3.34 4.01 -68.18 -0.27 -3.62 16 3 C 0.08 0.57 11.48 -17.24 -0.20 0.37 16 4 C -0.30 -2.92 8.59 -39.82 -0.34 -3.26 16 5 C 0.33 3.90 7.90 -154.53 -1.22 2.68 16 6 N -0.65 -7.58 5.27 -9.54 -0.05 -7.63 16 7 C 0.15 1.88 6.39 -83.53 -0.53 1.35 16 8 C -0.15 -1.64 7.87 -39.40 -0.31 -1.95 16 9 C -0.11 -1.18 10.04 -39.57 -0.40 -1.58 16 10 C -0.13 -1.51 10.04 -39.56 -0.40 -1.90 16 11 C -0.10 -1.51 8.72 -39.42 -0.34 -1.85 16 12 C 0.12 1.74 6.46 -83.44 -0.54 1.20 16 13 N -0.68 -9.61 5.14 -9.71 -0.05 -9.66 16 14 C 0.53 9.72 7.66 -10.99 -0.08 9.63 16 15 O -0.49 -10.61 13.01 5.54 0.07 -10.54 16 16 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 17 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 18 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 22 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 N -0.34 -4.18 12.59 31.41 0.40 -3.78 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.41 8.14 -51.92 -0.42 -0.02 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.16 1.36 5.82 -52.48 -0.31 1.06 16 32 H 0.41 4.55 8.01 -40.82 -0.33 4.22 16 33 H 0.14 1.32 5.44 -52.49 -0.29 1.03 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 36 H 0.15 2.58 5.76 -52.49 -0.30 2.28 16 37 H 0.41 4.65 7.81 -40.82 -0.32 4.34 16 38 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -35.94 356.29 -8.76 -44.70 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.47 Total: 7.51 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -3.26 Total: -9.77 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.76 Total: -49.87 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.94 -8.76 -44.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644458557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.489 kcal (2) G-P(sol) polarization free energy of solvation -35.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds