Wall clock time and date at job start Tue Mar 31 2020 16:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34968 * 125.96520 * 2 1 4 4 C 1.35239 * 107.86513 * 180.02562 * 3 2 1 5 5 C 1.40445 * 107.86371 * 0.02562 * 4 3 2 6 6 N 1.39985 * 125.97674 * 179.97438 * 5 4 3 7 7 C 1.39895 * 120.00360 * 351.34161 * 6 5 4 8 8 C 1.38752 * 120.09768 * 331.25367 * 7 6 5 9 9 C 1.38207 * 119.99245 * 180.27803 * 8 7 6 10 10 C 1.38295 * 120.19352 * 359.71441 * 9 8 7 11 11 C 1.38231 * 120.20725 * 0.02562 * 10 9 8 12 12 C 1.38675 * 120.00551 * 359.97438 * 11 10 9 13 13 N 1.40123 * 120.09838 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00185 * 335.49683 * 13 12 11 15 15 O 1.21295 * 119.99650 * 354.71493 * 14 13 12 16 16 C 1.50701 * 119.99973 * 174.43551 * 14 13 12 17 17 S 1.81001 * 109.47000 * 180.27619 * 16 14 13 18 18 C 1.76200 * 100.00008 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99950 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00231 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99583 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00270 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46838 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.46934 * 120.00033 * 22 20 18 25 25 H 1.48497 * 109.46718 * 240.00266 * 22 20 18 26 26 N 1.31243 * 108.04318 * 0.21982 * 5 4 3 27 27 H 1.08994 * 109.47322 * 90.00223 * 1 2 3 28 28 H 1.09010 * 109.47162 * 210.00402 * 1 2 3 29 29 H 1.09001 * 109.47223 * 329.99570 * 1 2 3 30 30 H 1.08000 * 126.07258 * 359.97438 * 3 2 1 31 31 H 1.08006 * 126.06890 * 179.97438 * 4 3 2 32 32 H 0.97002 * 120.00121 * 171.33691 * 6 5 4 33 33 H 1.07999 * 120.00333 * 359.97185 * 8 7 6 34 34 H 1.07998 * 119.90341 * 179.70082 * 9 8 7 35 35 H 1.08004 * 119.89279 * 180.02562 * 10 9 8 36 36 H 1.08000 * 119.99783 * 180.02562 * 11 10 9 37 37 H 0.96996 * 120.00237 * 155.50281 * 13 12 11 38 38 H 1.08993 * 109.47225 * 300.27355 * 16 14 13 39 39 H 1.09004 * 109.47028 * 60.28037 * 16 14 13 40 40 H 0.97007 * 120.00001 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2576 1.0924 0.0000 4 6 3.5431 0.6722 -0.0006 5 6 3.5373 -0.7322 -0.0015 6 7 4.6667 -1.5592 -0.0029 7 6 5.9386 -1.0061 -0.1857 8 6 6.0914 0.1577 -0.9257 9 6 7.3496 0.6991 -1.1098 10 6 8.4582 0.0876 -0.5534 11 6 8.3147 -1.0691 0.1898 12 6 7.0562 -1.6196 0.3799 13 7 6.9084 -2.7918 1.1334 14 6 7.9418 -3.6481 1.2572 15 8 8.9676 -3.4539 0.6398 16 6 7.8250 -4.8433 2.1676 17 16 9.3684 -5.7879 2.1241 18 6 8.9638 -7.0868 3.2439 19 1 7.9920 -7.1110 3.7144 20 6 9.8937 -8.0794 3.5206 21 7 11.0780 -8.0501 2.9468 22 14 9.4646 -9.4568 4.7072 23 1 8.0823 -9.2613 5.2133 24 1 9.5550 -10.7617 4.0044 25 1 10.4155 -9.4417 5.8477 26 7 2.2878 -1.1336 -0.0063 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.9246 2.1198 -0.0004 31 1 4.4188 1.3045 -0.0011 32 1 4.5675 -2.5159 0.1231 33 1 5.2279 0.6376 -1.3619 34 1 7.4675 1.6023 -1.6901 35 1 9.4391 0.5151 -0.7000 36 1 9.1827 -1.5436 0.6232 37 1 6.0624 -2.9870 1.5658 38 1 7.6337 -4.5067 3.1864 39 1 7.0025 -5.4757 1.8332 40 1 11.7281 -8.7436 3.1404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644458557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:20 Heat of formation + Delta-G solvation = 72.000792 kcal Electronic energy + Delta-G solvation = -24399.033059 eV Core-core repulsion = 20727.651430 eV Total energy + Delta-G solvation = -3671.381628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.27369 -41.56886 -39.69835 -36.72518 -35.83981 -34.60403 -33.27411 -32.00278 -31.36187 -30.10317 -29.20860 -27.67427 -27.06294 -24.26375 -23.37142 -22.12716 -21.47853 -21.33763 -19.95701 -18.93498 -18.37555 -18.05200 -17.45707 -16.92450 -16.89902 -16.58819 -16.40374 -16.14283 -15.46321 -15.38845 -15.05793 -14.93092 -14.60133 -14.50019 -14.12695 -13.83696 -13.79259 -13.41576 -13.24928 -13.17727 -12.93167 -12.75160 -12.62417 -12.35694 -11.95565 -11.74814 -11.57534 -11.55177 -11.17519 -10.83389 -10.31947 -10.15808 -9.59112 -9.22300 -8.69239 -8.36986 -8.33287 -6.14922 0.28293 0.42850 1.06837 1.19887 1.36819 1.40221 1.43915 1.53025 1.55672 1.97682 2.07772 2.24449 2.44789 2.92372 2.97559 3.25050 3.73493 3.76798 3.95785 4.05408 4.21174 4.23281 4.39949 4.43833 4.49949 4.52332 4.56027 4.64902 4.70159 4.75770 4.82896 5.02155 5.14765 5.34558 5.40217 5.40728 5.52561 5.69248 5.87944 6.18127 6.20221 6.25513 6.26885 6.41704 6.93820 7.03084 7.04840 8.72416 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.002454 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.003662 B =11408.578541 C =13117.819258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.379 5.379 3 C 0.092 3.908 4 C -0.325 4.325 5 C 0.310 3.690 6 N -0.652 5.652 7 C 0.158 3.842 8 C -0.147 4.147 9 C -0.097 4.097 10 C -0.132 4.132 11 C -0.125 4.125 12 C 0.095 3.905 13 N -0.656 5.656 14 C 0.535 3.465 15 O -0.532 6.532 16 C -0.131 4.131 17 S -0.140 6.140 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 0.999 3.001 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.273 1.273 26 N -0.383 5.383 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.221 0.779 31 H 0.166 0.834 32 H 0.410 0.590 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.122 0.878 37 H 0.419 0.581 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.357 23.804 -6.327 33.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.161 5.161 3 C -0.055 4.055 4 C -0.356 4.356 5 C 0.054 3.946 6 N -0.282 5.282 7 C 0.058 3.942 8 C -0.169 4.169 9 C -0.116 4.116 10 C -0.152 4.152 11 C -0.146 4.146 12 C -0.002 4.002 13 N -0.302 5.302 14 C 0.323 3.677 15 O -0.408 6.408 16 C -0.282 4.282 17 S 0.087 5.913 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.821 3.179 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.199 1.199 26 N -0.214 5.214 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.139 0.861 30 H 0.238 0.762 31 H 0.183 0.817 32 H 0.246 0.754 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.159 0.841 36 H 0.140 0.860 37 H 0.256 0.744 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.483 23.118 -7.334 32.400 hybrid contribution -0.757 -1.412 1.612 2.272 sum -22.240 21.706 -5.723 31.600 Atomic orbital electron populations 1.22164 0.71829 1.05839 1.04432 1.48413 1.07449 1.02562 1.57718 1.23159 0.89668 0.95010 0.97662 1.21682 0.99155 0.92260 1.22518 1.19361 0.86651 0.91067 0.97550 1.40908 1.00339 1.08496 1.78410 1.17343 0.82096 0.97060 0.97736 1.21285 0.99549 0.96361 0.99700 1.21299 0.90712 1.00571 0.99031 1.21247 1.00478 0.94857 0.98598 1.21303 0.95963 0.96557 1.00749 1.17660 0.94227 0.89689 0.98657 1.43219 1.15987 1.19759 1.51224 1.20218 0.83017 0.83131 0.81365 1.90668 1.30364 1.74071 1.45705 1.23374 1.04775 0.97602 1.02442 1.85543 1.16556 1.28351 1.60830 1.23229 1.03985 1.11744 1.30498 0.89939 1.26120 0.94173 1.00614 0.98223 1.70181 1.06461 1.34976 1.43029 0.84902 0.78878 0.76832 0.77323 1.18151 1.19908 1.19869 1.77340 0.99987 1.09609 1.34489 0.89810 0.89999 0.86076 0.76207 0.81666 0.75388 0.82693 0.82248 0.84103 0.86009 0.74358 0.86908 0.86903 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.47 127.77 1.46 2.06 16 2 N -0.38 -5.76 4.01 -369.61 -1.48 -7.25 16 3 C 0.09 1.06 11.48 83.52 0.96 2.02 16 4 C -0.32 -5.48 8.59 22.12 0.19 -5.29 16 5 C 0.31 6.96 7.90 133.39 1.05 8.02 16 6 N -0.65 -14.87 5.27 -184.09 -0.97 -15.84 16 7 C 0.16 3.79 6.39 38.28 0.24 4.04 16 8 C -0.15 -2.91 7.87 22.39 0.18 -2.73 16 9 C -0.10 -1.75 10.04 22.28 0.22 -1.53 16 10 C -0.13 -3.05 10.04 22.28 0.22 -2.82 16 11 C -0.12 -3.81 8.72 22.37 0.20 -3.61 16 12 C 0.10 2.74 6.46 38.22 0.25 2.99 16 13 N -0.66 -19.00 5.14 -303.03 -1.56 -20.56 16 14 C 0.54 20.24 7.66 87.66 0.67 20.91 16 15 O -0.53 -24.29 13.01 -3.08 -0.04 -24.33 16 16 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 17 S -0.14 -7.73 20.57 -56.49 -1.16 -8.89 16 18 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -55.89 13.22 21.65 0.29 -55.60 16 22 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 N -0.38 -8.97 12.59 -54.53 -0.69 -9.66 16 27 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.22 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.17 2.38 5.82 -2.91 -0.02 2.37 16 32 H 0.41 9.10 8.01 -92.71 -0.74 8.36 16 33 H 0.16 2.53 5.44 -2.91 -0.02 2.51 16 34 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.12 4.47 5.76 -2.91 -0.02 4.45 16 37 H 0.42 9.59 7.81 -92.71 -0.72 8.87 16 38 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 39 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 40 H 0.27 15.44 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -82.28 356.29 3.26 -79.02 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.36 Total: 27.32 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 7.20 Total: -10.06 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -4.41 Total: -108.91 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.04 Total: -24.33 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -1.16 Total: -8.89 kcal Total: -82.28 3.26 -79.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644458557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.019 kcal (2) G-P(sol) polarization free energy of solvation -82.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds