Wall clock time and date at job start Tue Mar 31 2020 16:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35503 * 126.98291 * 2 1 4 4 N 1.30519 * 107.30361 * 180.23027 * 3 2 1 5 5 N 1.28592 * 109.67740 * 359.77608 * 4 3 2 6 6 C 1.30522 * 109.67171 * 359.97438 * 5 4 3 7 7 C 1.50704 * 126.34214 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47362 * 90.02788 * 7 6 5 9 9 N 1.46497 * 109.47339 * 179.97438 * 8 7 6 10 10 C 1.34780 * 120.00366 * 179.97438 * 9 8 7 11 11 O 1.21604 * 119.99709 * 0.02562 * 10 9 8 12 12 C 1.47429 * 119.99956 * 180.02562 * 10 9 8 13 13 C 1.39672 * 120.21756 * 0.25452 * 12 10 9 14 14 C 1.37810 * 119.93747 * 180.27711 * 13 12 10 15 15 C 1.38652 * 120.38325 * 359.72378 * 14 13 12 16 16 C 1.37911 * 120.43793 * 0.02562 * 15 14 13 17 17 C 1.39120 * 120.05120 * 359.97438 * 16 15 14 18 18 S 1.76194 * 120.18970 * 179.97438 * 17 16 15 19 19 C 1.76196 * 100.00220 * 353.15297 * 18 17 16 20 20 H 1.08001 * 119.99783 * 354.35202 * 19 18 17 21 21 C 1.38812 * 120.00190 * 174.34598 * 19 18 17 22 22 N 1.31553 * 119.99601 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00210 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47050 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47337 * 119.99683 * 23 21 19 26 26 H 1.48503 * 109.46956 * 240.00297 * 23 21 19 27 27 H 1.09002 * 109.46893 * 270.15377 * 1 2 3 28 28 H 1.09000 * 109.47207 * 30.15166 * 1 2 3 29 29 H 1.08994 * 109.47522 * 150.15392 * 1 2 3 30 30 H 1.07997 * 126.34112 * 0.02562 * 3 2 1 31 31 H 1.08998 * 109.47331 * 330.02250 * 7 6 5 32 32 H 1.09006 * 109.46316 * 210.02308 * 7 6 5 33 33 H 1.08998 * 109.47338 * 59.99465 * 8 7 6 34 34 H 1.09003 * 109.47438 * 299.99719 * 8 7 6 35 35 H 0.97001 * 120.00026 * 0.02562 * 9 8 7 36 36 H 1.08008 * 120.03189 * 359.97438 * 13 12 10 37 37 H 1.07999 * 119.80841 * 179.74372 * 14 13 12 38 38 H 1.07997 * 119.78260 * 180.02562 * 15 14 13 39 39 H 1.07999 * 119.98204 * 180.02562 * 16 15 14 40 40 H 0.97004 * 119.99870 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5090 0.6429 -0.0050 5 7 3.5090 -0.6430 -0.0034 6 6 2.2800 -1.0824 0.0033 7 6 1.8476 -2.5260 0.0067 8 6 1.7080 -3.0132 1.4503 9 7 1.2872 -4.4164 1.4536 10 6 1.0996 -5.0611 2.6223 11 8 1.2794 -4.4777 3.6740 12 6 0.6766 -6.4734 2.6255 13 6 0.4740 -7.1492 1.4201 14 6 0.0731 -8.4677 1.4299 15 6 -0.1256 -9.1314 2.6309 16 6 0.0749 -8.4807 3.8303 17 6 0.4796 -7.1497 3.8416 18 16 0.7362 -6.3146 5.3717 19 6 0.1488 -7.5412 6.4920 20 1 -0.3082 -8.4436 6.1136 21 6 0.2735 -7.3477 7.8609 22 7 0.8299 -6.2483 8.3217 23 14 -0.3485 -8.6484 9.0486 24 1 -0.9284 -9.7811 8.2829 25 1 0.7793 -9.1389 9.8808 26 1 -1.3917 -8.0592 9.9260 27 1 -0.3633 0.0028 1.0277 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3634 -0.8913 -0.5114 30 1 1.9702 2.1170 0.0004 31 1 2.5935 -3.1299 -0.5101 32 1 0.8883 -2.6191 -0.5025 33 1 0.9622 -2.4093 1.9670 34 1 2.6672 -2.9201 1.9596 35 1 1.1441 -4.8819 0.6146 36 1 0.6267 -6.6376 0.4813 37 1 -0.0869 -8.9871 0.4966 38 1 -0.4394 -10.1648 2.6273 39 1 -0.0817 -9.0049 4.7614 40 1 0.9174 -6.1132 9.2783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649699197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:16 Heat of formation + Delta-G solvation = 74.575682 kcal Electronic energy + Delta-G solvation = -24512.692014 eV Core-core repulsion = 20841.422042 eV Total energy + Delta-G solvation = -3671.269973 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.37360 -39.55640 -37.56933 -35.76745 -35.08383 -32.77525 -32.59552 -30.68402 -30.30302 -28.84902 -27.94694 -25.84868 -24.50357 -22.69098 -22.64224 -21.89065 -21.04189 -20.12439 -18.27466 -17.43449 -17.21232 -16.66233 -15.94152 -15.85742 -15.65030 -15.16595 -15.00093 -14.54738 -14.37134 -13.86845 -13.83755 -13.73207 -13.66635 -13.13884 -13.01356 -12.85447 -12.28941 -12.15662 -11.76153 -11.62160 -11.58387 -11.23755 -11.23164 -10.93569 -10.58603 -10.49725 -10.34611 -9.85199 -9.71666 -9.54096 -9.45253 -8.89274 -8.75976 -8.36909 -8.09821 -6.56521 -6.48314 -4.19164 1.49464 1.49628 1.98804 2.14647 2.64010 3.08868 3.10581 3.19058 3.31629 3.41543 3.47270 4.03350 4.09458 4.19959 4.28898 4.44806 4.52220 4.57629 4.67267 4.90685 4.92899 5.09996 5.10574 5.18152 5.28070 5.35350 5.46750 5.57246 5.75694 5.80500 5.86708 5.96818 6.08479 6.35452 6.50820 6.56098 6.63141 6.81131 6.99419 7.10549 7.42486 7.56301 7.80618 8.14387 8.49248 8.72186 8.98043 10.54977 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.002693 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.314848 B =10395.374675 C =11764.212684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.475 5.475 3 C 0.148 3.852 4 N -0.297 5.297 5 N -0.287 5.287 6 C 0.182 3.818 7 C -0.044 4.044 8 C 0.131 3.869 9 N -0.739 5.739 10 C 0.553 3.447 11 O -0.506 6.506 12 C -0.178 4.178 13 C -0.061 4.061 14 C -0.187 4.187 15 C -0.076 4.076 16 C -0.153 4.153 17 C -0.057 4.057 18 S 0.185 5.815 19 C -0.596 4.596 20 H 0.092 0.908 21 C 0.083 3.917 22 N -0.857 5.857 23 Si 0.920 3.080 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.219 0.781 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.396 0.604 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 7.606 -19.130 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.166 5.166 3 C -0.139 4.139 4 N -0.136 5.136 5 N -0.127 5.127 6 C -0.086 4.086 7 C -0.084 4.084 8 C 0.005 3.995 9 N -0.395 5.395 10 C 0.343 3.657 11 O -0.383 6.383 12 C -0.194 4.194 13 C -0.081 4.081 14 C -0.212 4.212 15 C -0.099 4.099 16 C -0.178 4.178 17 C -0.177 4.177 18 S 0.450 5.550 19 C -0.742 4.742 20 H 0.109 0.891 21 C -0.128 4.128 22 N -0.490 5.490 23 Si 0.745 3.255 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.235 0.765 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.231 0.769 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.451 9.436 -17.523 20.052 hybrid contribution -2.477 -2.123 -0.019 3.262 sum -4.928 7.313 -17.541 19.633 Atomic orbital electron populations 1.22180 0.75114 1.05289 1.04793 1.46215 1.09345 1.06788 1.54288 1.26460 0.87216 0.94945 1.05305 1.74270 1.18106 1.03280 1.17934 1.74306 1.16931 1.03198 1.18295 1.24551 0.87384 0.91915 1.04736 1.20205 1.03179 0.86378 0.98665 1.21086 1.01565 0.82582 0.94236 1.45752 1.72848 1.11926 1.08951 1.18310 0.77621 0.86638 0.83170 1.90801 1.49620 1.67580 1.30297 1.19064 1.14018 0.93213 0.93065 1.20881 0.97055 0.94659 0.95484 1.20633 1.07986 0.95178 0.97371 1.21090 0.97330 0.98845 0.92597 1.21446 1.03296 0.94172 0.98870 1.23092 0.97099 0.97005 1.00467 1.84774 1.65977 1.16356 0.87923 1.24095 1.45941 1.09767 0.94415 0.89065 1.25109 0.93745 0.96176 0.97765 1.69986 1.39196 1.24687 1.15099 0.86094 0.78755 0.80673 0.79986 1.19140 1.20199 1.20237 0.89422 0.88832 0.88882 0.76481 0.87405 0.89320 0.91714 0.90560 0.76938 0.87151 0.87057 0.87008 0.84355 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 11.04 59.84 0.66 0.91 16 2 N -0.48 -3.82 3.15 -122.69 -0.39 -4.21 16 3 C 0.15 1.32 12.74 -89.94 -1.15 0.17 16 4 N -0.30 -3.99 12.21 29.69 0.36 -3.63 16 5 N -0.29 -4.06 12.21 32.80 0.40 -3.66 16 6 C 0.18 1.93 7.28 -154.98 -1.13 0.80 16 7 C -0.04 -0.36 5.69 -27.89 -0.16 -0.52 16 8 C 0.13 1.53 5.66 -4.05 -0.02 1.51 16 9 N -0.74 -9.47 5.51 -61.39 -0.34 -9.81 16 10 C 0.55 10.26 7.75 -12.52 -0.10 10.16 16 11 O -0.51 -11.63 13.77 5.27 0.07 -11.56 16 12 C -0.18 -3.38 5.89 -104.75 -0.62 -4.00 16 13 C -0.06 -0.90 9.53 -39.20 -0.37 -1.27 16 14 C -0.19 -2.74 10.02 -39.58 -0.40 -3.13 16 15 C -0.08 -1.26 10.03 -39.55 -0.40 -1.66 16 16 C -0.15 -3.12 9.22 -39.37 -0.36 -3.49 16 17 C -0.06 -1.26 6.15 -38.39 -0.24 -1.50 16 18 S 0.18 4.91 18.56 -107.50 -2.00 2.92 16 19 C -0.60 -16.27 9.00 30.94 0.28 -15.99 16 20 H 0.09 2.36 4.98 -52.49 -0.26 2.10 16 21 C 0.08 2.26 5.49 -17.46 -0.10 2.17 16 22 N -0.86 -24.61 13.22 55.49 0.73 -23.88 16 23 Si 0.92 20.53 29.55 -169.99 -5.02 15.51 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.23 7.19 -51.93 -0.37 -0.15 16 30 H 0.22 0.92 8.06 -52.49 -0.42 0.49 16 31 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.45 7.21 -51.93 -0.37 0.08 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 3.70 6.50 -40.82 -0.27 3.43 16 36 H 0.11 1.16 6.40 -52.48 -0.34 0.83 16 37 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.14 2.97 5.04 -52.49 -0.26 2.70 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -36.85 355.51 -9.30 -46.15 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.39 Total: 2.66 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -4.09 Total: -15.84 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.77 Total: -45.19 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -2.00 Total: 2.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.85 -9.30 -46.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649699197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.729 kcal (2) G-P(sol) polarization free energy of solvation -36.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds