Wall clock time and date at job start Tue Mar 31 2020 16:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35503 * 126.98291 * 2 1 4 4 N 1.30519 * 107.30361 * 180.23027 * 3 2 1 5 5 N 1.28592 * 109.67740 * 359.77608 * 4 3 2 6 6 C 1.30522 * 109.67171 * 359.97438 * 5 4 3 7 7 C 1.50704 * 126.34214 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47362 * 90.02788 * 7 6 5 9 9 N 1.46497 * 109.47339 * 179.97438 * 8 7 6 10 10 C 1.34780 * 120.00366 * 179.97438 * 9 8 7 11 11 O 1.21604 * 119.99709 * 0.02562 * 10 9 8 12 12 C 1.47429 * 119.99956 * 180.02562 * 10 9 8 13 13 C 1.39672 * 120.21756 * 0.25452 * 12 10 9 14 14 C 1.37810 * 119.93747 * 180.27711 * 13 12 10 15 15 C 1.38652 * 120.38325 * 359.72378 * 14 13 12 16 16 C 1.37911 * 120.43793 * 0.02562 * 15 14 13 17 17 C 1.39120 * 120.05120 * 359.97438 * 16 15 14 18 18 S 1.76194 * 120.18970 * 179.97438 * 17 16 15 19 19 C 1.76196 * 100.00220 * 353.15297 * 18 17 16 20 20 H 1.08001 * 119.99783 * 354.35202 * 19 18 17 21 21 C 1.38812 * 120.00190 * 174.34598 * 19 18 17 22 22 N 1.31553 * 119.99601 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00210 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47050 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47337 * 119.99683 * 23 21 19 26 26 H 1.48503 * 109.46956 * 240.00297 * 23 21 19 27 27 H 1.09002 * 109.46893 * 270.15377 * 1 2 3 28 28 H 1.09000 * 109.47207 * 30.15166 * 1 2 3 29 29 H 1.08994 * 109.47522 * 150.15392 * 1 2 3 30 30 H 1.07997 * 126.34112 * 0.02562 * 3 2 1 31 31 H 1.08998 * 109.47331 * 330.02250 * 7 6 5 32 32 H 1.09006 * 109.46316 * 210.02308 * 7 6 5 33 33 H 1.08998 * 109.47338 * 59.99465 * 8 7 6 34 34 H 1.09003 * 109.47438 * 299.99719 * 8 7 6 35 35 H 0.97001 * 120.00026 * 0.02562 * 9 8 7 36 36 H 1.08008 * 120.03189 * 359.97438 * 13 12 10 37 37 H 1.07999 * 119.80841 * 179.74372 * 14 13 12 38 38 H 1.07997 * 119.78260 * 180.02562 * 15 14 13 39 39 H 1.07999 * 119.98204 * 180.02562 * 16 15 14 40 40 H 0.97004 * 119.99870 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5090 0.6429 -0.0050 5 7 3.5090 -0.6430 -0.0034 6 6 2.2800 -1.0824 0.0033 7 6 1.8476 -2.5260 0.0067 8 6 1.7080 -3.0132 1.4503 9 7 1.2872 -4.4164 1.4536 10 6 1.0996 -5.0611 2.6223 11 8 1.2794 -4.4777 3.6740 12 6 0.6766 -6.4734 2.6255 13 6 0.4740 -7.1492 1.4201 14 6 0.0731 -8.4677 1.4299 15 6 -0.1256 -9.1314 2.6309 16 6 0.0749 -8.4807 3.8303 17 6 0.4796 -7.1497 3.8416 18 16 0.7362 -6.3146 5.3717 19 6 0.1488 -7.5412 6.4920 20 1 -0.3082 -8.4436 6.1136 21 6 0.2735 -7.3477 7.8609 22 7 0.8299 -6.2483 8.3217 23 14 -0.3485 -8.6484 9.0486 24 1 -0.9284 -9.7811 8.2829 25 1 0.7793 -9.1389 9.8808 26 1 -1.3917 -8.0592 9.9260 27 1 -0.3633 0.0028 1.0277 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3634 -0.8913 -0.5114 30 1 1.9702 2.1170 0.0004 31 1 2.5935 -3.1299 -0.5101 32 1 0.8883 -2.6191 -0.5025 33 1 0.9622 -2.4093 1.9670 34 1 2.6672 -2.9201 1.9596 35 1 1.1441 -4.8819 0.6146 36 1 0.6267 -6.6376 0.4813 37 1 -0.0869 -8.9871 0.4966 38 1 -0.4394 -10.1648 2.6273 39 1 -0.0817 -9.0049 4.7614 40 1 0.9174 -6.1132 9.2783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649699197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:15 Heat of formation + Delta-G solvation = 49.262620 kcal Electronic energy + Delta-G solvation = -24513.789671 eV Core-core repulsion = 20841.422042 eV Total energy + Delta-G solvation = -3672.367629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.10953 -40.98940 -38.98975 -36.79543 -35.87395 -34.76581 -33.65143 -31.98583 -31.75488 -29.78375 -28.40166 -27.83976 -25.62095 -23.96909 -23.35902 -23.27190 -21.93163 -21.42408 -19.93688 -18.78561 -18.01881 -17.47499 -17.37285 -17.05117 -16.80095 -16.72688 -15.97343 -15.86561 -15.60425 -15.28110 -14.99133 -14.78487 -14.65351 -14.34676 -14.23056 -13.57279 -13.48950 -13.31785 -13.14306 -13.01071 -12.84577 -12.63198 -12.52093 -12.49230 -12.03646 -11.48877 -11.42233 -11.35101 -11.28154 -11.10291 -10.39739 -10.30471 -10.18029 -9.91189 -9.74581 -8.46450 -8.45153 -6.24425 0.05819 0.57016 0.80076 1.26710 1.34968 1.45598 1.58957 1.65985 1.82345 2.03023 2.16334 2.27320 2.87924 3.06482 3.25099 3.35726 3.71499 3.80762 3.90276 3.93030 3.99157 4.07179 4.29779 4.32634 4.36753 4.46376 4.64371 4.65465 4.71525 4.79051 4.87047 4.92398 5.02951 5.13703 5.17835 5.37920 5.42468 5.48268 5.59753 5.70592 5.95276 6.11220 6.18497 6.63998 6.95975 7.37027 7.71496 8.60296 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.002693 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.314848 B =10395.374675 C =11764.212684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.471 5.471 3 C 0.162 3.838 4 N -0.353 5.353 5 N -0.340 5.340 6 C 0.176 3.824 7 C -0.029 4.029 8 C 0.135 3.865 9 N -0.708 5.708 10 C 0.547 3.453 11 O -0.558 6.558 12 C -0.181 4.181 13 C -0.050 4.050 14 C -0.157 4.157 15 C -0.070 4.070 16 C -0.177 4.177 17 C -0.072 4.072 18 S 0.059 5.941 19 C -0.600 4.600 20 H 0.095 0.905 21 C 0.023 3.977 22 N -0.906 5.906 23 Si 0.994 3.006 24 H -0.256 1.256 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.260 0.740 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.418 0.582 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.148 0.852 39 H 0.116 0.884 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 5.941 -23.946 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.161 5.161 3 C -0.127 4.127 4 N -0.192 5.192 5 N -0.180 5.180 6 C -0.094 4.094 7 C -0.069 4.069 8 C 0.010 3.990 9 N -0.364 5.364 10 C 0.336 3.664 11 O -0.438 6.438 12 C -0.195 4.195 13 C -0.070 4.070 14 C -0.180 4.180 15 C -0.091 4.091 16 C -0.202 4.202 17 C -0.191 4.191 18 S 0.317 5.683 19 C -0.746 4.746 20 H 0.112 0.888 21 C -0.183 4.183 22 N -0.541 5.541 23 Si 0.815 3.185 24 H -0.180 1.180 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.276 0.724 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.257 0.743 36 H 0.186 0.814 37 H 0.185 0.815 38 H 0.165 0.835 39 H 0.134 0.866 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.794 7.731 -22.501 24.270 hybrid contribution -1.815 -1.612 1.005 2.628 sum -6.609 6.119 -21.496 23.306 Atomic orbital electron populations 1.22570 0.72280 1.07767 1.05480 1.46474 1.10892 1.05734 1.53026 1.27247 0.86256 0.96707 1.02465 1.74145 1.20925 1.03430 1.20690 1.74175 1.19432 1.03998 1.20397 1.24849 0.87102 0.93298 1.04146 1.20186 1.05732 0.85005 0.95967 1.21023 0.99484 0.81715 0.96761 1.45422 1.70580 1.12219 1.08161 1.18517 0.77221 0.86850 0.83852 1.90806 1.51824 1.68515 1.32691 1.19463 1.12801 0.93644 0.93553 1.21492 0.94775 0.95036 0.95694 1.21349 1.03294 0.94723 0.98596 1.21545 0.95500 1.00455 0.91616 1.21439 1.04938 0.93734 1.00064 1.22988 0.99194 0.97906 0.98967 1.84964 1.71343 1.19712 0.92257 1.24274 1.45971 1.09473 0.94914 0.88758 1.26160 0.94062 0.98447 0.99584 1.70144 1.41639 1.27073 1.15263 0.84985 0.78253 0.77853 0.77416 1.17967 1.19600 1.19573 0.89552 0.85885 0.87054 0.72384 0.86387 0.85020 0.92413 0.94000 0.74269 0.81436 0.81496 0.83459 0.86602 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.23 11.04 127.77 1.41 1.64 16 2 N -0.47 -6.57 3.15 -542.09 -1.71 -8.28 16 3 C 0.16 2.65 12.74 180.11 2.30 4.94 16 4 N -0.35 -9.62 12.21 -59.99 -0.73 -10.35 16 5 N -0.34 -9.77 12.21 -50.15 -0.61 -10.39 16 6 C 0.18 3.50 7.28 137.98 1.01 4.50 16 7 C -0.03 -0.39 5.69 29.85 0.17 -0.22 16 8 C 0.14 3.06 5.66 86.38 0.49 3.54 16 9 N -0.71 -16.49 5.51 -466.38 -2.57 -19.06 16 10 C 0.55 20.26 7.75 86.66 0.67 20.93 16 11 O -0.56 -27.36 13.77 -4.04 -0.06 -27.41 16 12 C -0.18 -6.62 5.89 -19.95 -0.12 -6.74 16 13 C -0.05 -1.20 9.53 22.52 0.21 -0.99 16 14 C -0.16 -3.49 10.02 22.27 0.22 -3.27 16 15 C -0.07 -2.02 10.03 22.29 0.22 -1.80 16 16 C -0.18 -7.20 9.22 22.40 0.21 -6.99 16 17 C -0.07 -3.33 6.15 23.04 0.14 -3.19 16 18 S 0.06 3.38 18.56 -56.49 -1.05 2.33 16 19 C -0.60 -35.09 9.00 67.96 0.61 -34.48 16 20 H 0.09 5.20 4.98 -2.91 -0.01 5.19 16 21 C 0.02 1.32 5.49 84.87 0.47 1.78 16 22 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 23 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.11 0.03 7.19 -2.39 -0.02 0.02 16 30 H 0.26 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.13 0.65 7.21 -2.38 -0.02 0.63 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.42 5.67 6.50 -92.71 -0.60 5.06 16 36 H 0.17 2.12 6.40 -2.91 -0.02 2.10 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.12 5.18 5.04 -2.91 -0.01 5.17 16 40 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -94.92 355.51 4.10 -90.82 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.50 Total: 12.21 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 8.01 Total: -20.34 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -5.33 Total: -103.73 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.05 Total: 2.33 kcal Total: -94.92 4.10 -90.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649699197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.080 kcal (2) G-P(sol) polarization free energy of solvation -94.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds