Wall clock time and date at job start Tue Mar 31 2020 16:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 120.00111 * 2 1 4 4 O 1.21276 * 119.99981 * 179.72617 * 3 2 1 5 5 C 1.50703 * 119.99523 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.46639 * 179.97438 * 5 3 2 7 7 C 1.76206 * 99.99938 * 179.97438 * 6 5 3 8 8 H 1.08004 * 119.99695 * 0.02562 * 7 6 5 9 9 C 1.38793 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31627 * 120.00269 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00042 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47304 * 89.99232 * 11 9 7 13 13 H 1.48497 * 109.47309 * 209.99975 * 11 9 7 14 14 H 1.48507 * 109.46704 * 329.99371 * 11 9 7 15 15 C 1.46494 * 120.00254 * 179.97438 * 2 1 3 16 16 H 1.09002 * 109.47606 * 174.41839 * 15 2 1 17 17 C 1.53008 * 109.46994 * 54.42126 * 15 2 1 18 18 N 1.46907 * 109.47004 * 54.99870 * 17 15 2 19 19 C 1.46892 * 111.00224 * 179.97438 * 18 17 15 20 20 C 1.50697 * 109.47483 * 180.02562 * 19 18 17 21 21 C 1.31157 * 119.99802 * 124.99848 * 20 19 18 22 22 Cl 1.73599 * 120.00374 * 0.02562 * 21 20 19 23 23 C 1.52999 * 109.47267 * 294.42545 * 15 2 1 24 24 C 1.53000 * 117.49973 * 251.30277 * 23 15 2 25 25 C 1.52997 * 117.49837 * 182.64433 * 23 15 2 26 26 H 1.09003 * 109.47117 * 92.05026 * 1 2 3 27 27 H 1.08997 * 109.47535 * 212.04950 * 1 2 3 28 28 H 1.09004 * 109.47102 * 332.04732 * 1 2 3 29 29 H 1.09001 * 109.47462 * 299.99394 * 5 3 2 30 30 H 1.08996 * 109.47491 * 60.00302 * 5 3 2 31 31 H 0.97002 * 120.00396 * 180.02562 * 10 9 7 32 32 H 1.08992 * 109.47378 * 174.99849 * 17 15 2 33 33 H 1.09006 * 109.47072 * 295.00578 * 17 15 2 34 34 H 1.00898 * 111.00143 * 303.95997 * 18 17 15 35 35 H 1.08998 * 109.47547 * 300.00650 * 19 18 17 36 36 H 1.09005 * 109.46699 * 60.00541 * 19 18 17 37 37 H 1.08000 * 120.00218 * 305.00458 * 20 19 18 38 38 H 1.08002 * 120.00035 * 180.02562 * 21 20 19 39 39 H 1.08997 * 115.54876 * 36.97445 * 23 15 2 40 40 H 1.09005 * 117.49104 * 0.02562 * 24 23 15 41 41 H 1.09000 * 117.49890 * 145.01482 * 24 23 15 42 42 H 1.09002 * 117.49875 * 214.97402 * 25 23 15 43 43 H 1.09000 * 117.50206 * 359.97258 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0050 5 6 1.3853 2.4723 0.0006 6 16 2.5616 3.8481 0.0012 7 6 1.4414 5.2083 0.0010 8 1 0.3761 5.0305 0.0011 9 6 1.9282 6.5081 0.0009 10 7 3.2265 6.7247 0.0013 11 14 0.7408 7.9501 0.0014 12 1 0.4265 8.3321 1.4016 13 1 1.3618 9.1030 -0.6988 14 1 -0.5101 7.5614 -0.6983 15 6 2.1975 -1.2686 0.0006 16 1 3.2650 -1.0720 -0.0995 17 6 1.7257 -2.1305 -1.1723 18 7 1.8658 -1.3737 -2.4236 19 6 1.4218 -2.1718 -3.5741 20 6 1.5806 -1.3646 -4.8368 21 6 2.2798 -1.8436 -5.8377 22 17 3.0219 -3.4076 -5.7083 23 6 1.9360 -2.0080 1.3143 24 6 3.0859 -2.0892 2.3203 25 6 2.6656 -3.3345 1.5357 26 1 -0.3633 -0.0368 -1.0270 27 1 -0.3634 -0.8710 0.5453 28 1 -0.3633 0.9078 0.4817 29 1 0.7584 2.5303 -0.8892 30 1 0.7590 2.5299 0.8908 31 1 3.5667 7.6331 0.0016 32 1 2.3312 -3.0352 -1.2252 33 1 0.6798 -2.4012 -1.0267 34 1 1.3653 -0.4989 -2.3751 35 1 2.0256 -3.0766 -3.6435 36 1 0.3740 -2.4431 -3.4453 37 1 1.1187 -0.3917 -4.9174 38 1 2.3940 -1.2649 -6.7425 39 1 0.9251 -1.9172 1.7116 40 1 4.0286 -1.6154 2.0462 41 1 2.8315 -2.0520 3.3795 42 1 2.1348 -4.1162 2.0792 43 1 3.3315 -3.6807 0.7453 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676197753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:59 Heat of formation + Delta-G solvation = 6.882259 kcal Electronic energy + Delta-G solvation = -23891.329066 eV Core-core repulsion = 20318.231180 eV Total energy + Delta-G solvation = -3573.097886 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.98466 -37.77672 -37.27692 -36.19563 -34.86747 -32.92753 -32.42370 -30.19660 -28.19536 -26.75141 -25.51268 -25.06261 -22.97101 -22.13431 -20.73452 -20.17278 -19.07239 -17.69719 -16.99827 -16.46968 -16.23432 -16.03106 -15.36516 -14.96277 -14.80801 -14.76020 -14.37589 -13.89083 -13.73687 -13.19766 -13.05281 -12.85991 -12.74601 -12.50771 -12.30215 -12.17347 -12.09738 -11.94492 -11.77427 -11.52758 -11.24965 -11.06510 -11.01637 -10.77059 -10.71544 -10.55725 -10.13372 -9.78915 -9.43434 -9.28088 -9.06192 -8.61197 -8.44653 -8.20545 -6.48517 -6.20943 -3.91199 1.62767 2.11679 2.89970 3.10353 3.22032 3.25109 3.29763 3.55268 3.72760 4.00854 4.20797 4.51944 4.66446 4.74713 4.82935 4.93198 4.96468 5.03717 5.11402 5.13663 5.14131 5.22148 5.25884 5.38639 5.42273 5.46327 5.53877 5.58793 5.65020 5.76755 5.86657 5.89183 5.91403 6.04491 6.04671 6.13224 6.18299 6.68136 6.80857 7.19297 7.56535 7.59975 8.35435 8.61722 9.24233 10.86379 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.010051 B = 0.003053 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.260637 B = 9167.968558 C =11105.701846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.617 5.617 3 C 0.536 3.464 4 O -0.508 6.508 5 C -0.150 4.150 6 S -0.059 6.059 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.174 3.826 16 H 0.110 0.890 17 C 0.058 3.942 18 N -0.679 5.679 19 C 0.075 3.925 20 C -0.135 4.135 21 C -0.101 4.101 22 Cl -0.096 7.096 23 C -0.165 4.165 24 C -0.170 4.170 25 C -0.175 4.175 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.268 0.732 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.345 0.655 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.136 0.864 38 H 0.149 0.851 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 -22.258 -4.895 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.353 5.353 3 C 0.324 3.676 4 O -0.382 6.382 5 C -0.300 4.300 6 S 0.167 5.833 7 C -0.683 4.683 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.744 3.256 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.070 3.930 16 H 0.128 0.872 17 C -0.072 4.072 18 N -0.311 5.311 19 C -0.054 4.054 20 C -0.154 4.154 21 C -0.146 4.146 22 Cl -0.068 7.068 23 C -0.185 4.185 24 C -0.207 4.207 25 C -0.212 4.212 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.165 0.835 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.793 -22.398 -4.971 23.439 hybrid contribution -3.321 0.974 0.146 3.464 sum -8.114 -21.424 -4.825 23.412 Atomic orbital electron populations 1.21723 0.80363 1.03291 1.01180 1.47824 1.06299 1.05405 1.75779 1.20285 0.87955 0.84361 0.74966 1.90693 1.13700 1.86536 1.47238 1.23554 1.04535 0.97405 1.04514 1.85433 1.07937 0.93231 1.96671 1.22856 0.94290 0.92282 1.58912 0.91036 1.24980 0.95635 0.98349 0.94587 1.70017 1.11718 1.21635 1.46851 0.86188 0.80287 0.80805 0.78331 1.20301 1.20761 1.19727 1.20568 0.99110 0.82352 0.90952 0.87199 1.22222 0.99372 0.96808 0.88810 1.60376 1.62223 1.06977 1.01526 1.21220 0.98910 0.96840 0.88412 1.23105 0.97921 1.00151 0.94251 1.24443 0.99658 0.88758 1.01750 1.98346 1.81958 1.28586 1.97874 1.22580 0.97839 1.00185 0.97913 1.23014 0.99318 1.01144 0.97209 1.22932 1.03767 0.91025 1.03512 0.93380 0.91509 0.90389 0.89464 0.89415 0.92197 0.89974 0.94959 0.83508 0.89225 0.94119 0.84662 0.83337 0.87760 0.88221 0.88879 0.88858 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.03 59.85 0.54 1.31 16 2 N -0.62 -8.26 1.91 -173.93 -0.33 -8.59 16 3 C 0.54 9.95 7.69 -10.98 -0.08 9.86 16 4 O -0.51 -11.52 15.20 5.56 0.08 -11.43 16 5 C -0.15 -2.98 4.68 36.01 0.17 -2.81 16 6 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 10 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 11 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.17 2.11 2.54 -67.93 -0.17 1.94 16 16 H 0.11 1.70 6.70 -51.93 -0.35 1.35 16 17 C 0.06 0.58 4.73 -3.82 -0.02 0.56 16 18 N -0.68 -7.69 6.48 -115.05 -0.75 -8.44 16 19 C 0.07 0.70 5.98 -4.98 -0.03 0.67 16 20 C -0.14 -1.22 9.78 -36.07 -0.35 -1.57 16 21 C -0.10 -0.88 10.82 28.97 0.31 -0.57 16 22 Cl -0.10 -0.91 26.96 -51.86 -1.40 -2.31 16 23 C -0.17 -1.69 5.15 -90.62 -0.47 -2.16 16 24 C -0.17 -1.81 10.18 -26.70 -0.27 -2.08 16 25 C -0.17 -1.50 9.84 -26.70 -0.26 -1.77 16 26 H 0.05 0.42 7.63 -51.93 -0.40 0.02 16 27 H 0.07 0.52 6.79 -51.93 -0.35 0.17 16 28 H 0.08 0.79 6.36 -51.93 -0.33 0.46 16 29 H 0.09 1.60 8.11 -51.92 -0.42 1.18 16 30 H 0.09 1.63 7.41 -51.92 -0.38 1.24 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.08 0.78 7.64 -51.93 -0.40 0.38 16 33 H 0.03 0.28 7.73 -51.93 -0.40 -0.12 16 34 H 0.35 4.13 7.18 -39.29 -0.28 3.85 16 35 H 0.09 0.88 6.00 -51.93 -0.31 0.57 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 38 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.10 0.99 6.93 -51.93 -0.36 0.63 16 40 H 0.10 1.21 8.06 -51.93 -0.42 0.80 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.80 7.83 -51.93 -0.41 0.39 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -33.45 381.66 -10.05 -43.50 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.47 Total: 3.85 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.44 Total: -9.43 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.34 Total: -42.38 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.40 Total: -2.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.45 -10.05 -43.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676197753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.383 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds