Wall clock time and date at job start Tue Mar 31 2020 16:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 120.00111 * 2 1 4 4 O 1.21276 * 119.99981 * 179.72617 * 3 2 1 5 5 C 1.50703 * 119.99523 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.46639 * 179.97438 * 5 3 2 7 7 C 1.76206 * 99.99938 * 179.97438 * 6 5 3 8 8 H 1.08004 * 119.99695 * 0.02562 * 7 6 5 9 9 C 1.38793 * 119.99869 * 180.02562 * 7 6 5 10 10 N 1.31627 * 120.00269 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00042 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47304 * 89.99232 * 11 9 7 13 13 H 1.48497 * 109.47309 * 209.99975 * 11 9 7 14 14 H 1.48507 * 109.46704 * 329.99371 * 11 9 7 15 15 C 1.46494 * 120.00254 * 179.97438 * 2 1 3 16 16 H 1.09002 * 109.47606 * 174.41839 * 15 2 1 17 17 C 1.53008 * 109.46994 * 54.42126 * 15 2 1 18 18 N 1.46907 * 109.47004 * 54.99870 * 17 15 2 19 19 C 1.46892 * 111.00224 * 179.97438 * 18 17 15 20 20 C 1.50697 * 109.47483 * 180.02562 * 19 18 17 21 21 C 1.31157 * 119.99802 * 124.99848 * 20 19 18 22 22 Cl 1.73599 * 120.00374 * 0.02562 * 21 20 19 23 23 C 1.52999 * 109.47267 * 294.42545 * 15 2 1 24 24 C 1.53000 * 117.49973 * 251.30277 * 23 15 2 25 25 C 1.52997 * 117.49837 * 182.64433 * 23 15 2 26 26 H 1.09003 * 109.47117 * 92.05026 * 1 2 3 27 27 H 1.08997 * 109.47535 * 212.04950 * 1 2 3 28 28 H 1.09004 * 109.47102 * 332.04732 * 1 2 3 29 29 H 1.09001 * 109.47462 * 299.99394 * 5 3 2 30 30 H 1.08996 * 109.47491 * 60.00302 * 5 3 2 31 31 H 0.97002 * 120.00396 * 180.02562 * 10 9 7 32 32 H 1.08992 * 109.47378 * 174.99849 * 17 15 2 33 33 H 1.09006 * 109.47072 * 295.00578 * 17 15 2 34 34 H 1.00898 * 111.00143 * 303.95997 * 18 17 15 35 35 H 1.08998 * 109.47547 * 300.00650 * 19 18 17 36 36 H 1.09005 * 109.46699 * 60.00541 * 19 18 17 37 37 H 1.08000 * 120.00218 * 305.00458 * 20 19 18 38 38 H 1.08002 * 120.00035 * 180.02562 * 21 20 19 39 39 H 1.08997 * 115.54876 * 36.97445 * 23 15 2 40 40 H 1.09005 * 117.49104 * 0.02562 * 24 23 15 41 41 H 1.09000 * 117.49890 * 145.01482 * 24 23 15 42 42 H 1.09002 * 117.49875 * 214.97402 * 25 23 15 43 43 H 1.09000 * 117.50206 * 359.97258 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0050 5 6 1.3853 2.4723 0.0006 6 16 2.5616 3.8481 0.0012 7 6 1.4414 5.2083 0.0010 8 1 0.3761 5.0305 0.0011 9 6 1.9282 6.5081 0.0009 10 7 3.2265 6.7247 0.0013 11 14 0.7408 7.9501 0.0014 12 1 0.4265 8.3321 1.4016 13 1 1.3618 9.1030 -0.6988 14 1 -0.5101 7.5614 -0.6983 15 6 2.1975 -1.2686 0.0006 16 1 3.2650 -1.0720 -0.0995 17 6 1.7257 -2.1305 -1.1723 18 7 1.8658 -1.3737 -2.4236 19 6 1.4218 -2.1718 -3.5741 20 6 1.5806 -1.3646 -4.8368 21 6 2.2798 -1.8436 -5.8377 22 17 3.0219 -3.4076 -5.7083 23 6 1.9360 -2.0080 1.3143 24 6 3.0859 -2.0892 2.3203 25 6 2.6656 -3.3345 1.5357 26 1 -0.3633 -0.0368 -1.0270 27 1 -0.3634 -0.8710 0.5453 28 1 -0.3633 0.9078 0.4817 29 1 0.7584 2.5303 -0.8892 30 1 0.7590 2.5299 0.8908 31 1 3.5667 7.6331 0.0016 32 1 2.3312 -3.0352 -1.2252 33 1 0.6798 -2.4012 -1.0267 34 1 1.3653 -0.4989 -2.3751 35 1 2.0256 -3.0766 -3.6435 36 1 0.3740 -2.4431 -3.4453 37 1 1.1187 -0.3917 -4.9174 38 1 2.3940 -1.2649 -6.7425 39 1 0.9251 -1.9172 1.7116 40 1 4.0286 -1.6154 2.0462 41 1 2.8315 -2.0520 3.3795 42 1 2.1348 -4.1162 2.0792 43 1 3.3315 -3.6807 0.7453 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676197753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:58 Heat of formation + Delta-G solvation = -14.080996 kcal Electronic energy + Delta-G solvation = -23892.238101 eV Core-core repulsion = 20318.231180 eV Total energy + Delta-G solvation = -3574.006921 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17563 -38.87791 -38.02484 -36.98097 -35.96631 -34.56940 -33.74298 -31.43612 -29.37843 -27.73610 -27.59829 -25.93477 -23.79279 -22.94164 -21.73218 -21.03151 -20.19926 -19.57216 -18.29129 -17.29186 -17.24619 -17.02941 -16.86558 -16.46217 -16.12786 -15.76849 -15.59676 -15.11211 -14.63886 -14.53248 -14.40472 -13.99174 -13.72867 -13.50263 -13.36912 -13.17448 -13.13605 -13.06080 -12.88810 -12.72992 -12.60207 -12.58182 -12.38305 -12.13552 -11.71657 -11.43686 -11.36139 -11.12988 -10.96254 -10.75517 -10.22792 -10.14107 -9.66261 -9.30201 -8.64611 -8.32869 -6.10730 0.94120 1.27464 1.42840 1.43024 1.47352 1.57261 1.65763 2.10223 2.29113 2.85476 3.01169 3.20719 3.30665 3.75631 3.83371 3.88448 3.93985 4.08065 4.15756 4.22439 4.24934 4.33805 4.35832 4.46092 4.50131 4.50502 4.64599 4.67830 4.73782 4.81478 4.89930 4.91230 5.04267 5.21371 5.24794 5.28842 5.36068 5.42922 5.65551 6.02315 6.21109 6.30370 6.36712 7.08267 7.23388 8.76262 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.010051 B = 0.003053 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.260637 B = 9167.968558 C =11105.701846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.600 5.600 3 C 0.535 3.465 4 O -0.562 6.562 5 C -0.121 4.121 6 S -0.153 6.153 7 C -0.544 4.544 8 H 0.083 0.917 9 C 0.013 3.987 10 N -0.912 5.912 11 Si 0.998 3.002 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.256 1.256 15 C 0.175 3.825 16 H 0.069 0.931 17 C 0.067 3.933 18 N -0.700 5.700 19 C 0.078 3.922 20 C -0.145 4.145 21 C -0.104 4.104 22 Cl -0.105 7.105 23 C -0.166 4.166 24 C -0.193 4.193 25 C -0.148 4.148 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.270 0.730 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.340 0.660 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.144 0.856 38 H 0.166 0.834 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 -23.617 -5.030 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.333 5.333 3 C 0.323 3.677 4 O -0.440 6.440 5 C -0.273 4.273 6 S 0.074 5.926 7 C -0.691 4.691 8 H 0.101 0.899 9 C -0.192 4.192 10 N -0.548 5.548 11 Si 0.820 3.180 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.180 1.180 15 C 0.072 3.928 16 H 0.087 0.913 17 C -0.063 4.063 18 N -0.332 5.332 19 C -0.050 4.050 20 C -0.164 4.164 21 C -0.149 4.149 22 Cl -0.077 7.077 23 C -0.186 4.186 24 C -0.230 4.230 25 C -0.186 4.186 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.159 0.841 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.161 0.839 38 H 0.184 0.816 39 H 0.140 0.860 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.136 0.864 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.207 -23.817 -5.108 25.704 hybrid contribution -2.283 1.255 0.182 2.611 sum -10.490 -22.562 -4.926 25.364 Atomic orbital electron populations 1.22065 0.77507 1.04790 1.03072 1.47742 1.07924 1.04237 1.73423 1.20074 0.87227 0.85331 0.75076 1.90680 1.15849 1.87276 1.50212 1.23364 1.02626 0.95066 1.06199 1.85650 1.12663 0.97295 1.96999 1.23187 0.94610 0.92647 1.58703 0.89921 1.26121 0.97543 1.01694 0.93812 1.70190 1.14144 1.22402 1.48103 0.84965 0.77963 0.76368 0.78750 1.19400 1.20415 1.18027 1.20604 0.96851 0.82056 0.93326 0.91312 1.22168 1.00783 0.96087 0.87268 1.60370 1.62934 1.07312 1.02604 1.21206 0.99677 0.96321 0.87807 1.23245 0.98308 1.00577 0.94281 1.24730 0.99224 0.88423 1.02499 1.98344 1.82134 1.29319 1.97922 1.22558 0.98363 1.01185 0.96471 1.23004 0.98616 1.03372 0.97992 1.23009 1.02548 0.90463 1.02536 0.91355 0.88452 0.90422 0.87465 0.87669 0.92066 0.89332 0.92430 0.84097 0.89707 0.92486 0.83898 0.81643 0.85965 0.90990 0.88066 0.86367 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 9.03 127.77 1.15 2.25 16 2 N -0.60 -15.26 1.91 -822.58 -1.57 -16.83 16 3 C 0.54 20.05 7.69 87.66 0.67 20.72 16 4 O -0.56 -26.82 15.20 -3.02 -0.05 -26.87 16 5 C -0.12 -4.81 4.68 71.24 0.33 -4.47 16 6 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 7 C -0.54 -30.91 9.50 67.95 0.65 -30.26 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 9 C 0.01 0.74 5.49 84.86 0.47 1.20 16 10 N -0.91 -56.24 13.22 21.65 0.29 -55.96 16 11 Si 1.00 43.39 29.55 68.60 2.03 45.41 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 14 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 15 C 0.18 4.08 2.54 44.99 0.11 4.20 16 16 H 0.07 2.22 6.70 -2.39 -0.02 2.21 16 17 C 0.07 1.19 4.73 86.30 0.41 1.60 16 18 N -0.70 -14.87 6.48 -517.92 -3.36 -18.23 16 19 C 0.08 1.32 5.98 85.56 0.51 1.84 16 20 C -0.14 -2.42 9.78 25.49 0.25 -2.17 16 21 C -0.10 -1.69 10.82 67.62 0.73 -0.95 16 22 Cl -0.11 -1.90 26.96 -2.72 -0.07 -1.98 16 23 C -0.17 -3.06 5.15 -10.79 -0.06 -3.12 16 24 C -0.19 -4.04 10.18 30.62 0.31 -3.73 16 25 C -0.15 -2.21 9.84 30.62 0.30 -1.90 16 26 H 0.07 0.91 7.63 -2.39 -0.02 0.89 16 27 H 0.10 1.06 6.79 -2.39 -0.02 1.04 16 28 H 0.08 1.32 6.36 -2.39 -0.02 1.31 16 29 H 0.11 3.79 8.11 -2.39 -0.02 3.77 16 30 H 0.11 3.78 7.41 -2.40 -0.02 3.76 16 31 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.09 1.49 7.64 -2.39 -0.02 1.47 16 33 H 0.06 0.77 7.73 -2.38 -0.02 0.75 16 34 H 0.34 7.62 7.18 -89.70 -0.64 6.98 16 35 H 0.08 1.53 6.00 -2.39 -0.01 1.51 16 36 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.12 1.85 6.93 -2.39 -0.02 1.83 16 40 H 0.07 1.90 8.06 -2.38 -0.02 1.88 16 41 H 0.10 1.91 8.14 -2.39 -0.02 1.90 16 42 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.10 1.44 7.83 -2.39 -0.02 1.42 16 Total: -1.00 -76.81 381.66 2.32 -74.48 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.37 Total: 24.48 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 5.85 Total: -14.80 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -4.64 Total: -91.02 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.98 kcal Total: -76.81 2.32 -74.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676197753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.404 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds