Wall clock time and date at job start Tue Mar 31 2020 16:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34779 * 120.00095 * 2 1 4 4 O 1.21273 * 120.00088 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99990 * 359.97438 * 3 2 1 6 6 S 1.80993 * 109.47218 * 180.02562 * 5 3 2 7 7 C 1.76200 * 100.00123 * 180.02562 * 6 5 3 8 8 H 1.07996 * 120.00061 * 359.97438 * 7 6 5 9 9 C 1.38802 * 119.99655 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00546 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99616 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46919 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47145 * 119.99772 * 11 9 7 14 14 H 1.48499 * 109.47042 * 239.99879 * 11 9 7 15 15 C 1.46493 * 120.00030 * 179.97438 * 2 1 3 16 16 H 1.08997 * 109.47289 * 180.02562 * 15 2 1 17 17 C 1.53004 * 109.46930 * 300.00220 * 15 2 1 18 18 N 1.46901 * 109.46916 * 304.99696 * 17 15 2 19 19 C 1.46905 * 110.99870 * 180.02562 * 18 17 15 20 20 C 1.50697 * 109.47066 * 180.02562 * 19 18 17 21 21 C 1.31163 * 119.99739 * 125.00038 * 20 19 18 22 22 Cl 1.73603 * 119.99605 * 179.97438 * 21 20 19 23 23 C 1.52999 * 109.47205 * 59.99808 * 15 2 1 24 24 C 1.52998 * 117.49942 * 128.74779 * 23 15 2 25 25 C 1.52998 * 117.49679 * 60.08788 * 23 15 2 26 26 H 1.08996 * 109.46980 * 270.00447 * 1 2 3 27 27 H 1.09000 * 109.46746 * 30.00476 * 1 2 3 28 28 H 1.08996 * 109.47103 * 150.00410 * 1 2 3 29 29 H 1.09000 * 109.47108 * 300.00278 * 5 3 2 30 30 H 1.08999 * 109.47260 * 60.00130 * 5 3 2 31 31 H 0.96993 * 120.00348 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46889 * 185.00077 * 17 15 2 33 33 H 1.08995 * 109.47384 * 64.99717 * 17 15 2 34 34 H 1.00901 * 111.00067 * 303.95263 * 18 17 15 35 35 H 1.09001 * 109.46798 * 300.00327 * 19 18 17 36 36 H 1.08998 * 109.46961 * 60.00043 * 19 18 17 37 37 H 1.08002 * 120.00474 * 304.99890 * 20 19 18 38 38 H 1.07991 * 120.00245 * 359.97438 * 21 20 19 39 39 H 1.09004 * 115.55386 * 274.42077 * 23 15 2 40 40 H 1.09007 * 117.49757 * 0.02562 * 24 23 15 41 41 H 1.09004 * 117.50121 * 145.02080 * 24 23 15 42 42 H 1.09002 * 117.50011 * 214.97643 * 25 23 15 43 43 H 1.09000 * 117.49926 * 0.02562 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5616 3.8480 -0.0012 7 6 1.4416 5.2082 -0.0010 8 1 0.3763 5.0306 -0.0011 9 6 1.9284 6.5081 -0.0019 10 7 3.2267 6.7247 -0.0024 11 14 0.7409 7.9501 -0.0010 12 1 -0.6545 7.4422 0.0000 13 1 0.9679 8.7775 1.2110 14 1 0.9653 8.7769 -1.2140 15 6 2.1975 -1.2687 0.0006 16 1 3.2692 -1.0695 0.0009 17 6 1.8278 -2.0704 1.2502 18 7 2.0713 -1.2529 2.4462 19 6 1.7273 -1.9923 3.6682 20 6 1.9890 -1.1235 4.8714 21 6 1.0312 -0.8989 5.7389 22 17 1.3330 0.1013 7.1253 23 6 1.8279 -2.0716 -1.2483 24 6 2.9740 -2.6068 -2.1089 25 6 2.1228 -1.4371 -2.6089 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5137 29 1 0.7591 2.5299 -0.8908 30 1 0.7585 2.5303 0.8891 31 1 3.5669 7.6330 -0.0027 32 1 2.4376 -2.9727 1.2965 33 1 0.7741 -2.3458 1.2067 34 1 3.0271 -0.9310 2.4757 35 1 0.6729 -2.2675 3.6415 36 1 2.3367 -2.8938 3.7310 37 1 2.9652 -0.6858 5.0194 38 1 0.0550 -1.3362 5.5907 39 1 0.9323 -2.6871 -1.1635 40 1 3.9915 -2.3874 -1.7851 41 1 2.8324 -3.5744 -2.5906 42 1 1.4214 -1.6355 -3.4194 43 1 2.5805 -0.4478 -2.6143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676197762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:01 Heat of formation + Delta-G solvation = 3.448483 kcal Electronic energy + Delta-G solvation = -23905.621750 eV Core-core repulsion = 20332.374964 eV Total energy + Delta-G solvation = -3573.246786 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.88740 -37.62580 -37.11021 -36.36862 -34.73440 -33.03830 -32.37597 -30.13869 -28.15843 -26.56207 -25.45480 -25.00352 -22.63109 -22.30250 -20.83629 -20.37912 -19.00107 -17.61102 -16.81286 -16.43678 -16.08950 -15.88216 -15.26234 -15.15107 -14.76225 -14.68695 -14.09185 -13.98096 -13.69550 -13.36626 -12.90899 -12.82798 -12.66609 -12.49508 -12.24676 -12.07159 -12.01997 -11.73489 -11.62514 -11.56641 -11.17801 -11.03357 -10.97223 -10.95484 -10.71275 -10.47886 -10.34307 -9.73060 -9.39646 -9.18878 -9.02233 -8.59123 -8.31976 -8.14444 -6.42652 -6.16698 -3.85851 1.65215 2.15263 2.97412 3.20734 3.24962 3.29014 3.34279 3.60266 3.90084 3.95575 4.25790 4.50768 4.59192 4.76338 4.87269 4.87906 4.99477 5.02174 5.11620 5.14367 5.18588 5.24200 5.25259 5.30318 5.39126 5.53829 5.60077 5.68095 5.77333 5.86821 5.89257 5.97850 6.03342 6.04275 6.08088 6.15286 6.25422 6.67759 6.83784 7.14613 7.64969 7.71435 8.40771 8.71790 9.29002 10.90820 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.006984 B = 0.003868 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4008.030507 B = 7236.279751 C =10514.191993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.598 5.598 3 C 0.541 3.459 4 O -0.525 6.525 5 C -0.147 4.147 6 S -0.063 6.063 7 C -0.532 4.532 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.868 5.868 11 Si 0.916 3.084 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.173 3.827 16 H 0.100 0.900 17 C 0.056 3.944 18 N -0.678 5.678 19 C 0.095 3.905 20 C -0.135 4.135 21 C -0.099 4.099 22 Cl -0.094 7.094 23 C -0.167 4.167 24 C -0.173 4.173 25 C -0.165 4.165 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.267 0.733 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.349 0.651 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.123 0.877 38 H 0.144 0.856 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.382 -23.142 4.127 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.332 5.332 3 C 0.329 3.671 4 O -0.400 6.400 5 C -0.298 4.298 6 S 0.164 5.836 7 C -0.680 4.680 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.504 5.504 11 Si 0.743 3.257 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.069 3.931 16 H 0.118 0.882 17 C -0.074 4.074 18 N -0.310 5.310 19 C -0.034 4.034 20 C -0.154 4.154 21 C -0.145 4.145 22 Cl -0.066 7.066 23 C -0.187 4.187 24 C -0.210 4.210 25 C -0.202 4.202 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.141 0.859 38 H 0.162 0.838 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.041 -22.596 4.216 23.533 hybrid contribution -1.601 0.368 0.169 1.651 sum -6.642 -22.228 4.386 23.610 Atomic orbital electron populations 1.21627 0.80082 1.02372 1.01577 1.47536 1.06412 1.04594 1.74673 1.20192 0.87784 0.84463 0.74616 1.90658 1.13821 1.86745 1.48821 1.23522 1.04428 0.97315 1.04503 1.85340 1.08227 0.93390 1.96666 1.22907 0.94360 0.92274 1.58507 0.90992 1.24973 0.95604 0.98326 0.94635 1.70027 1.11709 1.21446 1.47201 0.86150 0.80448 0.81245 0.77859 1.19622 1.20591 1.20624 1.20497 0.98361 0.83082 0.91190 0.88159 1.22277 1.01437 0.94074 0.89653 1.60355 1.30978 1.39344 1.00275 1.20890 1.01316 0.93617 0.87575 1.23068 0.99602 0.98384 0.94388 1.24315 1.00546 0.98737 0.90860 1.98381 1.96184 1.68770 1.43269 1.22543 1.00415 1.03393 0.92303 1.22995 0.96110 0.98369 1.03575 1.22869 1.03013 0.98262 0.96033 0.92627 0.91190 0.91961 0.89640 0.89328 0.92327 0.94247 0.90736 0.83178 0.90417 0.93814 0.85904 0.83830 0.87801 0.88606 0.88856 0.88885 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 9.40 59.85 0.56 1.51 16 2 N -0.60 -8.10 2.37 -173.94 -0.41 -8.51 16 3 C 0.54 10.12 7.69 -10.98 -0.08 10.04 16 4 O -0.53 -11.65 15.19 5.56 0.08 -11.56 16 5 C -0.15 -3.05 4.71 36.01 0.17 -2.88 16 6 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 7 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 10 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 11 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.17 1.96 2.46 -67.93 -0.17 1.79 16 16 H 0.10 1.39 6.66 -51.93 -0.35 1.04 16 17 C 0.06 0.50 4.96 -3.82 -0.02 0.48 16 18 N -0.68 -7.05 6.21 -115.05 -0.72 -7.76 16 19 C 0.10 0.77 6.13 -4.97 -0.03 0.74 16 20 C -0.13 -1.25 9.50 -36.07 -0.34 -1.60 16 21 C -0.10 -0.91 10.43 28.97 0.30 -0.61 16 22 Cl -0.09 -1.02 29.10 -51.86 -1.51 -2.53 16 23 C -0.17 -1.56 4.35 -90.62 -0.39 -1.96 16 24 C -0.17 -1.57 10.18 -26.69 -0.27 -1.84 16 25 C -0.16 -1.74 10.13 -26.69 -0.27 -2.01 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 28 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 29 H 0.09 1.66 7.40 -51.92 -0.38 1.27 16 30 H 0.09 1.77 8.11 -51.92 -0.42 1.34 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 34 H 0.35 4.08 8.72 -39.29 -0.34 3.73 16 35 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 36 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.14 1.04 7.84 -52.49 -0.41 0.63 16 39 H 0.10 0.81 7.99 -51.93 -0.41 0.39 16 40 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -33.57 389.52 -10.29 -43.86 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.76 Total: 2.98 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.35 Total: -9.35 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.39 Total: -41.98 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.51 Total: -2.53 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.57 -10.29 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676197762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.307 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds