Wall clock time and date at job start Tue Mar 31 2020 16:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34779 * 120.00095 * 2 1 4 4 O 1.21273 * 120.00088 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99990 * 359.97438 * 3 2 1 6 6 S 1.80993 * 109.47218 * 180.02562 * 5 3 2 7 7 C 1.76200 * 100.00123 * 180.02562 * 6 5 3 8 8 H 1.07996 * 120.00061 * 359.97438 * 7 6 5 9 9 C 1.38802 * 119.99655 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00546 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99616 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46919 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47145 * 119.99772 * 11 9 7 14 14 H 1.48499 * 109.47042 * 239.99879 * 11 9 7 15 15 C 1.46493 * 120.00030 * 179.97438 * 2 1 3 16 16 H 1.08997 * 109.47289 * 180.02562 * 15 2 1 17 17 C 1.53004 * 109.46930 * 300.00220 * 15 2 1 18 18 N 1.46901 * 109.46916 * 304.99696 * 17 15 2 19 19 C 1.46905 * 110.99870 * 180.02562 * 18 17 15 20 20 C 1.50697 * 109.47066 * 180.02562 * 19 18 17 21 21 C 1.31163 * 119.99739 * 125.00038 * 20 19 18 22 22 Cl 1.73603 * 119.99605 * 179.97438 * 21 20 19 23 23 C 1.52999 * 109.47205 * 59.99808 * 15 2 1 24 24 C 1.52998 * 117.49942 * 128.74779 * 23 15 2 25 25 C 1.52998 * 117.49679 * 60.08788 * 23 15 2 26 26 H 1.08996 * 109.46980 * 270.00447 * 1 2 3 27 27 H 1.09000 * 109.46746 * 30.00476 * 1 2 3 28 28 H 1.08996 * 109.47103 * 150.00410 * 1 2 3 29 29 H 1.09000 * 109.47108 * 300.00278 * 5 3 2 30 30 H 1.08999 * 109.47260 * 60.00130 * 5 3 2 31 31 H 0.96993 * 120.00348 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46889 * 185.00077 * 17 15 2 33 33 H 1.08995 * 109.47384 * 64.99717 * 17 15 2 34 34 H 1.00901 * 111.00067 * 303.95263 * 18 17 15 35 35 H 1.09001 * 109.46798 * 300.00327 * 19 18 17 36 36 H 1.08998 * 109.46961 * 60.00043 * 19 18 17 37 37 H 1.08002 * 120.00474 * 304.99890 * 20 19 18 38 38 H 1.07991 * 120.00245 * 359.97438 * 21 20 19 39 39 H 1.09004 * 115.55386 * 274.42077 * 23 15 2 40 40 H 1.09007 * 117.49757 * 0.02562 * 24 23 15 41 41 H 1.09004 * 117.50121 * 145.02080 * 24 23 15 42 42 H 1.09002 * 117.50011 * 214.97643 * 25 23 15 43 43 H 1.09000 * 117.49926 * 0.02562 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5616 3.8480 -0.0012 7 6 1.4416 5.2082 -0.0010 8 1 0.3763 5.0306 -0.0011 9 6 1.9284 6.5081 -0.0019 10 7 3.2267 6.7247 -0.0024 11 14 0.7409 7.9501 -0.0010 12 1 -0.6545 7.4422 0.0000 13 1 0.9679 8.7775 1.2110 14 1 0.9653 8.7769 -1.2140 15 6 2.1975 -1.2687 0.0006 16 1 3.2692 -1.0695 0.0009 17 6 1.8278 -2.0704 1.2502 18 7 2.0713 -1.2529 2.4462 19 6 1.7273 -1.9923 3.6682 20 6 1.9890 -1.1235 4.8714 21 6 1.0312 -0.8989 5.7389 22 17 1.3330 0.1013 7.1253 23 6 1.8279 -2.0716 -1.2483 24 6 2.9740 -2.6068 -2.1089 25 6 2.1228 -1.4371 -2.6089 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5137 29 1 0.7591 2.5299 -0.8908 30 1 0.7585 2.5303 0.8891 31 1 3.5669 7.6330 -0.0027 32 1 2.4376 -2.9727 1.2965 33 1 0.7741 -2.3458 1.2067 34 1 3.0271 -0.9310 2.4757 35 1 0.6729 -2.2675 3.6415 36 1 2.3367 -2.8938 3.7310 37 1 2.9652 -0.6858 5.0194 38 1 0.0550 -1.3362 5.5907 39 1 0.9323 -2.6871 -1.1635 40 1 3.9915 -2.3874 -1.7851 41 1 2.8324 -3.5744 -2.5906 42 1 1.4214 -1.6355 -3.4194 43 1 2.5805 -0.4478 -2.6143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676197762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:01 Heat of formation + Delta-G solvation = -17.772128 kcal Electronic energy + Delta-G solvation = -23906.541945 eV Core-core repulsion = 20332.374964 eV Total energy + Delta-G solvation = -3574.166980 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07420 -38.71922 -37.88329 -37.12843 -35.85380 -34.57351 -33.86826 -31.37151 -29.37952 -27.67724 -27.52330 -25.80421 -23.41816 -23.07819 -21.80291 -21.21259 -20.20668 -19.52550 -18.14984 -17.26412 -17.11293 -16.87231 -16.78228 -16.41681 -16.14099 -15.88990 -15.41071 -14.97681 -14.72374 -14.44548 -14.37506 -14.03478 -13.83304 -13.43877 -13.37047 -13.15527 -13.09888 -12.91764 -12.90705 -12.61836 -12.57927 -12.41321 -12.35740 -12.04216 -11.77101 -11.67838 -11.31087 -11.14737 -11.13537 -10.65540 -10.23227 -10.14150 -9.51275 -9.27079 -8.63810 -8.33582 -6.10656 0.93062 1.28514 1.41111 1.41543 1.47665 1.58762 1.74168 2.15413 2.29310 2.99103 3.00492 3.19350 3.33309 3.69992 3.89708 3.93479 3.97461 4.08645 4.18878 4.25290 4.29151 4.34076 4.41180 4.43034 4.50114 4.53670 4.64166 4.68996 4.80334 4.83821 4.96616 5.03386 5.04848 5.26798 5.28635 5.30289 5.35644 5.42704 5.71119 6.07094 6.21005 6.28064 6.44579 7.07827 7.31584 8.75955 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.006984 B = 0.003868 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4008.030507 B = 7236.279751 C =10514.191993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.580 5.580 3 C 0.539 3.461 4 O -0.571 6.571 5 C -0.120 4.120 6 S -0.150 6.150 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.015 3.985 10 N -0.912 5.912 11 Si 0.997 3.003 12 H -0.257 1.257 13 H -0.274 1.274 14 H -0.273 1.273 15 C 0.170 3.830 16 H 0.067 0.933 17 C 0.064 3.936 18 N -0.698 5.698 19 C 0.102 3.898 20 C -0.142 4.142 21 C -0.100 4.100 22 Cl -0.115 7.115 23 C -0.154 4.154 24 C -0.163 4.163 25 C -0.181 4.181 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.271 0.729 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.336 0.664 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.169 0.831 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 -25.349 3.921 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.312 5.312 3 C 0.326 3.674 4 O -0.451 6.451 5 C -0.271 4.271 6 S 0.077 5.923 7 C -0.692 4.692 8 H 0.098 0.902 9 C -0.190 4.190 10 N -0.548 5.548 11 Si 0.818 3.182 12 H -0.181 1.181 13 H -0.199 1.199 14 H -0.198 1.198 15 C 0.066 3.934 16 H 0.085 0.915 17 C -0.065 4.065 18 N -0.329 5.329 19 C -0.026 4.026 20 C -0.162 4.162 21 C -0.145 4.145 22 Cl -0.087 7.087 23 C -0.173 4.173 24 C -0.200 4.200 25 C -0.218 4.218 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.186 0.814 39 H 0.155 0.845 40 H 0.099 0.901 41 H 0.138 0.862 42 H 0.129 0.871 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.301 -24.861 4.011 26.515 hybrid contribution -0.594 0.915 0.215 1.112 sum -8.895 -23.946 4.226 25.892 Atomic orbital electron populations 1.21894 0.77781 1.03939 1.02658 1.47481 1.07725 1.03792 1.72193 1.19879 0.87117 0.85290 0.75104 1.90643 1.15611 1.87367 1.51472 1.23332 1.02611 0.95644 1.05550 1.85504 1.12664 0.97193 1.96959 1.23220 0.94568 0.92808 1.58629 0.90233 1.26099 0.97547 1.01594 0.93761 1.70188 1.14082 1.22348 1.48210 0.84938 0.78245 0.76852 0.78118 1.18052 1.19937 1.19800 1.20684 0.96423 0.82394 0.93910 0.91500 1.22250 1.02976 0.93709 0.87595 1.60407 1.30198 1.40564 1.01691 1.20903 1.02535 0.93355 0.85845 1.23152 0.99078 0.98742 0.95209 1.24620 1.01528 0.98351 0.89983 1.98379 1.96331 1.69479 1.44465 1.22576 1.01680 1.02772 0.90274 1.23051 0.95298 0.98787 1.02909 1.22799 1.04311 0.96981 0.97759 0.91674 0.91695 0.88447 0.88188 0.88361 0.92041 0.92416 0.88489 0.84638 0.88636 0.92308 0.87455 0.81419 0.84486 0.90060 0.86163 0.87108 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.48 9.40 127.77 1.20 2.68 16 2 N -0.58 -15.04 2.37 -822.60 -1.95 -16.98 16 3 C 0.54 20.58 7.69 87.66 0.67 21.26 16 4 O -0.57 -26.81 15.19 -3.01 -0.05 -26.85 16 5 C -0.12 -5.05 4.71 71.24 0.34 -4.71 16 6 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 7 C -0.54 -31.91 9.50 67.95 0.65 -31.26 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 C 0.01 0.85 5.49 84.86 0.47 1.31 16 10 N -0.91 -57.02 13.22 21.65 0.29 -56.73 16 11 Si 1.00 44.51 29.55 68.60 2.03 46.53 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 15 C 0.17 3.58 2.46 44.99 0.11 3.69 16 16 H 0.07 1.91 6.66 -2.39 -0.02 1.89 16 17 C 0.06 0.96 4.96 86.30 0.43 1.38 16 18 N -0.70 -13.33 6.21 -517.92 -3.22 -16.55 16 19 C 0.10 1.40 6.13 85.55 0.52 1.93 16 20 C -0.14 -2.49 9.50 25.48 0.24 -2.25 16 21 C -0.10 -1.70 10.43 67.62 0.71 -0.99 16 22 Cl -0.11 -2.44 29.10 -2.72 -0.08 -2.52 16 23 C -0.15 -2.43 4.35 -10.79 -0.05 -2.48 16 24 C -0.16 -2.63 10.18 30.62 0.31 -2.32 16 25 C -0.18 -3.62 10.13 30.62 0.31 -3.31 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.31 6.44 -2.39 -0.02 1.29 16 28 H 0.10 1.18 7.18 -2.39 -0.02 1.16 16 29 H 0.10 3.86 7.40 -2.40 -0.02 3.84 16 30 H 0.10 3.90 8.11 -2.40 -0.02 3.88 16 31 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 1.06 7.84 -2.39 -0.02 1.04 16 34 H 0.34 7.89 8.72 -89.69 -0.78 7.11 16 35 H 0.10 1.00 7.79 -2.39 -0.02 0.98 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.11 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.17 1.97 7.84 -2.92 -0.02 1.95 16 39 H 0.14 1.36 7.99 -2.39 -0.02 1.34 16 40 H 0.08 1.56 8.05 -2.38 -0.02 1.54 16 41 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -77.55 389.52 1.99 -75.56 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.22 Total: 22.38 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 5.91 Total: -15.07 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -4.88 Total: -90.26 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.85 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.08 Total: -2.52 kcal Total: -77.55 1.99 -75.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676197762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.786 kcal (2) G-P(sol) polarization free energy of solvation -77.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds