Wall clock time and date at job start Tue Mar 31 2020 16:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34779 * 119.99910 * 2 1 4 4 O 1.21284 * 119.99642 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.00023 * 359.97438 * 3 2 1 6 6 S 1.80998 * 109.47169 * 180.02562 * 5 3 2 7 7 C 1.76201 * 100.00173 * 180.02562 * 6 5 3 8 8 H 1.08000 * 119.99738 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99794 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99665 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00139 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47364 * 89.99509 * 11 9 7 13 13 H 1.48497 * 109.46907 * 209.99667 * 11 9 7 14 14 H 1.48508 * 109.47137 * 329.99347 * 11 9 7 15 15 C 1.46500 * 119.99647 * 179.97438 * 2 1 3 16 16 C 1.53115 * 109.52458 * 300.00177 * 15 2 1 17 17 C 1.53041 * 109.27828 * 177.56142 * 16 15 2 18 18 N 1.46845 * 109.52182 * 300.82106 * 17 16 15 19 19 C 1.46899 * 110.99703 * 185.83887 * 18 17 16 20 20 C 1.50702 * 109.47025 * 169.99772 * 19 18 17 21 21 C 1.31167 * 120.00059 * 124.72150 * 20 19 18 22 22 Cl 1.73599 * 119.99679 * 0.27740 * 21 20 19 23 23 C 1.46839 * 111.19896 * 61.74020 * 18 17 16 24 24 C 1.53039 * 109.52777 * 298.25632 * 23 18 17 25 25 H 1.09000 * 109.47131 * 270.00247 * 1 2 3 26 26 H 1.09002 * 109.46901 * 30.00249 * 1 2 3 27 27 H 1.09001 * 109.46925 * 150.00341 * 1 2 3 28 28 H 1.09001 * 109.47633 * 300.00237 * 5 3 2 29 29 H 1.08999 * 109.47395 * 60.00327 * 5 3 2 30 30 H 0.96992 * 119.99857 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.57281 * 179.84029 * 15 2 1 32 32 H 1.08993 * 109.50611 * 57.61952 * 16 15 2 33 33 H 1.09001 * 109.53530 * 297.51578 * 16 15 2 34 34 H 1.08994 * 109.46158 * 180.80225 * 17 16 15 35 35 H 1.09008 * 109.45199 * 60.83271 * 17 16 15 36 36 H 1.09002 * 109.47399 * 49.99805 * 19 18 17 37 37 H 1.08999 * 109.47272 * 289.99744 * 19 18 17 38 38 H 1.08002 * 120.00299 * 305.00441 * 20 19 18 39 39 H 1.07999 * 120.00173 * 180.27508 * 21 20 19 40 40 H 1.09007 * 109.46615 * 58.27304 * 23 18 17 41 41 H 1.09001 * 109.46757 * 178.24054 * 23 18 17 42 42 H 1.08996 * 109.50574 * 299.24260 * 24 23 18 43 43 H 1.09003 * 109.53928 * 179.14020 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3854 2.4722 -0.0006 6 16 2.5616 3.8480 -0.0012 7 6 1.4415 5.2082 -0.0010 8 1 0.3762 5.0304 -0.0011 9 6 1.9283 6.5081 -0.0009 10 7 1.0916 7.5242 -0.0012 11 14 3.7709 6.8154 -0.0015 12 1 4.2586 6.8971 -1.4018 13 1 4.0598 8.0926 0.6987 14 1 4.4589 5.7007 0.6981 15 6 2.1975 -1.2688 0.0006 16 6 1.8284 -2.0722 1.2507 17 6 2.5494 -3.4216 1.2152 18 7 2.1568 -4.1561 0.0058 19 6 2.7216 -5.5122 0.0070 20 6 2.1065 -6.3135 -1.1113 21 6 2.8748 -6.8919 -2.0034 22 17 4.6005 -6.7402 -1.8915 23 6 2.5436 -3.4259 -1.2080 24 6 1.8224 -2.0766 -1.2450 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 0.7591 2.5299 -0.8908 29 1 0.7585 2.5303 0.8891 30 1 1.4317 8.4325 -0.0008 31 1 3.2695 -1.0716 -0.0024 32 1 0.7510 -2.2358 1.2732 33 1 2.1315 -1.5209 2.1408 34 1 2.2776 -4.0019 2.0969 35 1 3.6270 -3.2573 1.2066 36 1 2.5066 -5.9946 0.9605 37 1 3.8006 -5.4565 -0.1369 38 1 1.0328 -6.4078 -1.1810 39 1 2.4338 -7.4624 -2.8073 40 1 3.6213 -3.2617 -1.2052 41 1 2.2676 -4.0093 -2.0864 42 1 0.7449 -2.2402 -1.2617 43 1 2.1211 -1.5280 -2.1382 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690016968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:43 Heat of formation + Delta-G solvation = -19.188158 kcal Electronic energy + Delta-G solvation = -23776.298475 eV Core-core repulsion = 20202.070091 eV Total energy + Delta-G solvation = -3574.228384 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22791 -38.80008 -37.21859 -35.86163 -34.08100 -32.43394 -31.82592 -31.09748 -29.11362 -27.10760 -26.05394 -25.58018 -23.46440 -22.99003 -20.32194 -20.05352 -19.19640 -17.64270 -17.04550 -16.81655 -16.15237 -15.62251 -15.38995 -15.31896 -14.99044 -14.86591 -14.11064 -13.92556 -13.73376 -13.48544 -13.18012 -13.16498 -12.88228 -12.78298 -12.49104 -12.39994 -12.23275 -12.09360 -11.88980 -11.54040 -11.42652 -11.25296 -11.08699 -11.00614 -10.82404 -10.74549 -10.51050 -9.84912 -9.57157 -9.43893 -8.99854 -8.67220 -8.55715 -8.47953 -6.91314 -6.28494 -4.00031 1.38498 1.90572 2.71916 2.94594 3.20224 3.33622 3.51069 3.54608 3.60763 4.28775 4.33533 4.47563 4.61598 4.69247 4.74797 4.82083 4.93899 5.02444 5.07435 5.10566 5.15421 5.18948 5.26181 5.30104 5.37685 5.43204 5.48915 5.56317 5.65365 5.67809 5.70861 5.78766 5.79926 5.82695 5.97859 6.02520 6.14188 6.60348 6.69618 6.72119 7.47696 7.94634 8.41952 8.45694 9.17800 10.80716 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.027699 B = 0.002133 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.639105 B =13121.576145 C =13594.845877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.617 5.617 3 C 0.532 3.468 4 O -0.521 6.521 5 C -0.120 4.120 6 S -0.145 6.145 7 C -0.520 4.520 8 H 0.088 0.912 9 C 0.095 3.905 10 N -0.880 5.880 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.140 3.860 16 C -0.123 4.123 17 C 0.059 3.941 18 N -0.534 5.534 19 C 0.067 3.933 20 C -0.127 4.127 21 C -0.113 4.113 22 Cl -0.094 7.094 23 C 0.060 3.940 24 C -0.125 4.125 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.271 0.729 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 -30.917 -1.327 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.352 5.352 3 C 0.320 3.680 4 O -0.396 6.396 5 C -0.270 4.270 6 S 0.082 5.918 7 C -0.668 4.668 8 H 0.106 0.894 9 C -0.114 4.114 10 N -0.517 5.517 11 Si 0.682 3.318 12 H -0.192 1.192 13 H -0.200 1.200 14 H -0.159 1.159 15 C 0.036 3.964 16 C -0.162 4.162 17 C -0.069 4.069 18 N -0.258 5.258 19 C -0.060 4.060 20 C -0.146 4.146 21 C -0.158 4.158 22 Cl -0.066 7.066 23 C -0.068 4.068 24 C -0.163 4.163 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.364 -30.713 -1.306 30.743 hybrid contribution -0.047 0.462 -0.072 0.470 sum 0.317 -30.252 -1.378 30.285 Atomic orbital electron populations 1.21783 0.79668 1.03267 1.01904 1.47852 1.06871 1.05261 1.75198 1.20332 0.87922 0.84695 0.75055 1.90679 1.13777 1.86793 1.48302 1.23305 1.03023 0.95125 1.05582 1.84790 1.12054 0.97585 1.97412 1.22308 0.94862 0.90880 1.58707 0.89402 1.24717 0.98538 0.94886 0.93209 1.69937 1.34777 0.98865 1.48119 0.86731 0.85382 0.79796 0.79920 1.19229 1.19962 1.15929 1.21050 0.98303 0.82662 0.94358 1.21927 1.01638 0.94433 0.98185 1.22051 0.97894 0.94484 0.92447 1.61947 1.59762 1.01575 1.02557 1.21356 0.97733 0.89007 0.97933 1.23152 1.00391 0.96035 0.95050 1.24580 0.83917 1.05213 1.02138 1.98368 1.13807 1.96683 1.97773 1.22046 0.97828 0.94290 0.92663 1.21947 1.01586 0.94576 0.98219 0.92635 0.90627 0.91024 0.88550 0.88519 0.91958 0.88408 0.90639 0.90899 0.90307 0.94414 0.89373 0.92660 0.84190 0.83381 0.94437 0.90449 0.90638 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 9.26 59.85 0.55 1.34 16 2 N -0.62 -8.33 2.77 -173.79 -0.48 -8.81 16 3 C 0.53 9.71 7.69 -10.99 -0.08 9.63 16 4 O -0.52 -11.40 15.19 5.55 0.08 -11.32 16 5 C -0.12 -2.35 4.71 36.00 0.17 -2.18 16 6 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 7 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 9 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 10 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 11 Si 0.86 21.91 27.74 -169.99 -4.72 17.19 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 15 C 0.14 1.65 2.59 -67.81 -0.18 1.48 16 16 C -0.12 -1.19 5.41 -26.65 -0.14 -1.33 16 17 C 0.06 0.50 5.46 -3.83 -0.02 0.47 16 18 N -0.53 -4.26 4.65 -236.11 -1.10 -5.36 16 19 C 0.07 0.45 5.26 -4.98 -0.03 0.43 16 20 C -0.13 -0.71 8.53 -36.07 -0.31 -1.02 16 21 C -0.11 -0.63 10.82 28.97 0.31 -0.32 16 22 Cl -0.09 -0.70 26.96 -51.86 -1.40 -2.10 16 23 C 0.06 0.52 5.31 -3.84 -0.02 0.50 16 24 C -0.12 -1.22 5.40 -26.65 -0.14 -1.36 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 27 H 0.07 0.58 6.37 -51.93 -0.33 0.25 16 28 H 0.10 1.76 7.40 -51.91 -0.38 1.38 16 29 H 0.10 1.78 8.11 -51.92 -0.42 1.36 16 30 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.10 1.42 6.91 -51.93 -0.36 1.06 16 32 H 0.07 0.68 7.60 -51.93 -0.39 0.29 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.56 8.01 -51.93 -0.42 0.14 16 35 H 0.04 0.34 8.14 -51.92 -0.42 -0.08 16 36 H 0.09 0.53 7.99 -51.93 -0.41 0.11 16 37 H 0.06 0.43 5.99 -51.93 -0.31 0.12 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.08 0.63 7.10 -51.93 -0.37 0.26 16 42 H 0.08 0.68 6.57 -51.93 -0.34 0.34 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -33.32 368.42 -9.56 -42.87 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.61 Total: -2.13 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 0.33 Total: -4.38 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -0.80 Total: -39.99 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.72 Total: 17.19 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.40 Total: -2.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.32 -9.56 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690016968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.685 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds