Wall clock time and date at job start Tue Mar 31 2020 16:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34779 * 119.99910 * 2 1 4 4 O 1.21284 * 119.99642 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.00023 * 359.97438 * 3 2 1 6 6 S 1.80998 * 109.47169 * 180.02562 * 5 3 2 7 7 C 1.76201 * 100.00173 * 180.02562 * 6 5 3 8 8 H 1.08000 * 119.99738 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99794 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99665 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00139 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47364 * 89.99509 * 11 9 7 13 13 H 1.48497 * 109.46907 * 209.99667 * 11 9 7 14 14 H 1.48508 * 109.47137 * 329.99347 * 11 9 7 15 15 C 1.46500 * 119.99647 * 179.97438 * 2 1 3 16 16 C 1.53115 * 109.52458 * 300.00177 * 15 2 1 17 17 C 1.53041 * 109.27828 * 177.56142 * 16 15 2 18 18 N 1.46845 * 109.52182 * 300.82106 * 17 16 15 19 19 C 1.46899 * 110.99703 * 185.83887 * 18 17 16 20 20 C 1.50702 * 109.47025 * 169.99772 * 19 18 17 21 21 C 1.31167 * 120.00059 * 124.72150 * 20 19 18 22 22 Cl 1.73599 * 119.99679 * 0.27740 * 21 20 19 23 23 C 1.46839 * 111.19896 * 61.74020 * 18 17 16 24 24 C 1.53039 * 109.52777 * 298.25632 * 23 18 17 25 25 H 1.09000 * 109.47131 * 270.00247 * 1 2 3 26 26 H 1.09002 * 109.46901 * 30.00249 * 1 2 3 27 27 H 1.09001 * 109.46925 * 150.00341 * 1 2 3 28 28 H 1.09001 * 109.47633 * 300.00237 * 5 3 2 29 29 H 1.08999 * 109.47395 * 60.00327 * 5 3 2 30 30 H 0.96992 * 119.99857 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.57281 * 179.84029 * 15 2 1 32 32 H 1.08993 * 109.50611 * 57.61952 * 16 15 2 33 33 H 1.09001 * 109.53530 * 297.51578 * 16 15 2 34 34 H 1.08994 * 109.46158 * 180.80225 * 17 16 15 35 35 H 1.09008 * 109.45199 * 60.83271 * 17 16 15 36 36 H 1.09002 * 109.47399 * 49.99805 * 19 18 17 37 37 H 1.08999 * 109.47272 * 289.99744 * 19 18 17 38 38 H 1.08002 * 120.00299 * 305.00441 * 20 19 18 39 39 H 1.07999 * 120.00173 * 180.27508 * 21 20 19 40 40 H 1.09007 * 109.46615 * 58.27304 * 23 18 17 41 41 H 1.09001 * 109.46757 * 178.24054 * 23 18 17 42 42 H 1.08996 * 109.50574 * 299.24260 * 24 23 18 43 43 H 1.09003 * 109.53928 * 179.14020 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3854 2.4722 -0.0006 6 16 2.5616 3.8480 -0.0012 7 6 1.4415 5.2082 -0.0010 8 1 0.3762 5.0304 -0.0011 9 6 1.9283 6.5081 -0.0009 10 7 1.0916 7.5242 -0.0012 11 14 3.7709 6.8154 -0.0015 12 1 4.2586 6.8971 -1.4018 13 1 4.0598 8.0926 0.6987 14 1 4.4589 5.7007 0.6981 15 6 2.1975 -1.2688 0.0006 16 6 1.8284 -2.0722 1.2507 17 6 2.5494 -3.4216 1.2152 18 7 2.1568 -4.1561 0.0058 19 6 2.7216 -5.5122 0.0070 20 6 2.1065 -6.3135 -1.1113 21 6 2.8748 -6.8919 -2.0034 22 17 4.6005 -6.7402 -1.8915 23 6 2.5436 -3.4259 -1.2080 24 6 1.8224 -2.0766 -1.2450 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 0.7591 2.5299 -0.8908 29 1 0.7585 2.5303 0.8891 30 1 1.4317 8.4325 -0.0008 31 1 3.2695 -1.0716 -0.0024 32 1 0.7510 -2.2358 1.2732 33 1 2.1315 -1.5209 2.1408 34 1 2.2776 -4.0019 2.0969 35 1 3.6270 -3.2573 1.2066 36 1 2.5066 -5.9946 0.9605 37 1 3.8006 -5.4565 -0.1369 38 1 1.0328 -6.4078 -1.1810 39 1 2.4338 -7.4624 -2.8073 40 1 3.6213 -3.2617 -1.2052 41 1 2.2676 -4.0093 -2.0864 42 1 0.7449 -2.2402 -1.2617 43 1 2.1211 -1.5280 -2.1382 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690016968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:42 Heat of formation + Delta-G solvation = -40.623656 kcal Electronic energy + Delta-G solvation = -23777.227988 eV Core-core repulsion = 20202.070091 eV Total energy + Delta-G solvation = -3575.157897 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31871 -39.76644 -37.80558 -36.85067 -34.82842 -34.67503 -32.67158 -31.85023 -30.46570 -28.01506 -27.86877 -26.77352 -24.20860 -23.83521 -21.12476 -20.77480 -20.32193 -19.58852 -18.19905 -17.70253 -17.17161 -16.99356 -16.79785 -16.31896 -15.91409 -15.83638 -15.59128 -14.97008 -14.86352 -14.65816 -14.40621 -14.30606 -14.03250 -13.61324 -13.50639 -13.37849 -13.17509 -13.13451 -13.02174 -12.82784 -12.69123 -12.50934 -12.28524 -12.18349 -11.88233 -11.68549 -11.58099 -11.48824 -11.17936 -10.90583 -10.53247 -10.02909 -9.67473 -9.33891 -9.01407 -8.52209 -6.23165 0.96426 0.96901 1.30218 1.45112 1.46873 1.51112 1.53247 2.06253 2.24270 2.68178 2.85867 2.91288 3.52099 3.76111 3.80156 3.92599 4.01778 4.14678 4.18117 4.24881 4.29270 4.38410 4.41670 4.46271 4.59900 4.62173 4.65266 4.68085 4.82336 4.86841 4.90867 4.97406 5.01609 5.16098 5.24874 5.27945 5.35192 5.56911 5.70378 6.03055 6.04508 6.10767 6.25640 6.93021 7.08282 8.60069 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.027699 B = 0.002133 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.639105 B =13121.576145 C =13594.845877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.602 5.602 3 C 0.531 3.469 4 O -0.567 6.567 5 C -0.104 4.104 6 S -0.181 6.181 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.046 3.954 10 N -0.915 5.915 11 Si 0.914 3.086 12 H -0.263 1.263 13 H -0.258 1.258 14 H -0.239 1.239 15 C 0.137 3.863 16 C -0.114 4.114 17 C 0.061 3.939 18 N -0.528 5.528 19 C 0.065 3.935 20 C -0.126 4.126 21 C -0.114 4.114 22 Cl -0.117 7.117 23 C 0.065 3.935 24 C -0.116 4.116 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.277 0.723 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.024 0.976 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.158 0.842 39 H 0.170 0.830 40 H 0.020 0.980 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 -33.242 -1.346 33.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C 0.318 3.682 4 O -0.446 6.446 5 C -0.254 4.254 6 S 0.046 5.954 7 C -0.674 4.674 8 H 0.082 0.918 9 C -0.160 4.160 10 N -0.553 5.553 11 Si 0.736 3.264 12 H -0.187 1.187 13 H -0.182 1.182 14 H -0.163 1.163 15 C 0.034 3.966 16 C -0.153 4.153 17 C -0.067 4.067 18 N -0.252 5.252 19 C -0.062 4.062 20 C -0.145 4.145 21 C -0.159 4.159 22 Cl -0.089 7.089 23 C -0.063 4.063 24 C -0.154 4.154 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.042 0.958 36 H 0.117 0.883 37 H 0.062 0.938 38 H 0.175 0.825 39 H 0.187 0.813 40 H 0.038 0.962 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.780 -33.077 -1.323 33.113 hybrid contribution 0.158 1.032 -0.063 1.046 sum -0.623 -32.045 -1.386 32.081 Atomic orbital electron populations 1.22098 0.77079 1.04750 1.03469 1.47875 1.08423 1.04350 1.72866 1.20082 0.87267 0.85456 0.75345 1.90665 1.15513 1.87410 1.51004 1.23271 1.01658 0.93444 1.07064 1.84745 1.14003 0.99093 1.97568 1.22431 0.94363 0.92385 1.58216 0.91832 1.25549 1.02673 0.94803 0.92952 1.70009 1.36694 0.99505 1.49114 0.85877 0.80325 0.80046 0.80178 1.18749 1.18249 1.16255 1.21188 0.96427 0.82216 0.96797 1.21847 1.02653 0.94474 0.96289 1.22046 0.96974 0.94165 0.93502 1.61989 1.59454 1.01918 1.01887 1.21408 0.97168 0.88479 0.99179 1.23228 1.01143 0.95722 0.94445 1.24902 0.82614 1.05519 1.02832 1.98369 1.15882 1.96783 1.97853 1.21976 0.96666 0.94009 0.93666 1.21870 1.02645 0.94490 0.96401 0.90975 0.90682 0.88116 0.86988 0.87052 0.91355 0.91722 0.88995 0.91946 0.88382 0.95765 0.88278 0.93836 0.82458 0.81254 0.96173 0.89274 0.88842 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 9.26 127.77 1.18 2.35 16 2 N -0.60 -15.37 2.77 -822.13 -2.28 -17.64 16 3 C 0.53 19.17 7.69 87.65 0.67 19.84 16 4 O -0.57 -25.29 15.19 -3.04 -0.05 -25.33 16 5 C -0.10 -4.01 4.71 71.23 0.34 -3.67 16 6 S -0.18 -9.30 18.55 -56.49 -1.05 -10.35 16 7 C -0.53 -30.81 10.04 67.96 0.68 -30.13 16 8 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 9 C 0.05 2.70 5.50 84.86 0.47 3.16 16 10 N -0.92 -55.81 13.97 21.65 0.30 -55.51 16 11 Si 0.91 45.45 27.74 68.60 1.90 47.36 16 12 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 15 C 0.14 3.09 2.59 45.07 0.12 3.21 16 16 C -0.11 -1.97 5.41 30.65 0.17 -1.81 16 17 C 0.06 0.91 5.46 86.33 0.47 1.39 16 18 N -0.53 -7.19 4.65 -900.93 -4.19 -11.38 16 19 C 0.06 0.74 5.26 85.56 0.45 1.19 16 20 C -0.13 -1.07 8.53 25.48 0.22 -0.85 16 21 C -0.11 -1.01 10.82 67.61 0.73 -0.28 16 22 Cl -0.12 -1.63 26.96 -2.72 -0.07 -1.71 16 23 C 0.07 1.04 5.31 86.33 0.46 1.50 16 24 C -0.12 -2.05 5.40 30.65 0.17 -1.88 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.34 6.44 -2.39 -0.02 1.33 16 27 H 0.10 1.19 6.37 -2.39 -0.02 1.18 16 28 H 0.11 3.98 7.40 -2.40 -0.02 3.96 16 29 H 0.11 3.97 8.11 -2.40 -0.02 3.95 16 30 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 31 H 0.06 1.93 6.91 -2.39 -0.02 1.91 16 32 H 0.09 1.32 7.60 -2.39 -0.02 1.30 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.12 8.01 -2.39 -0.02 1.10 16 35 H 0.02 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.10 0.93 7.99 -2.39 -0.02 0.91 16 37 H 0.04 0.62 5.99 -2.39 -0.01 0.61 16 38 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 39 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 40 H 0.02 0.39 8.14 -2.38 -0.02 0.37 16 41 H 0.09 1.24 7.10 -2.39 -0.02 1.22 16 42 H 0.09 1.34 6.57 -2.39 -0.02 1.33 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -73.49 368.42 1.65 -71.84 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.96 Total: 8.71 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 6.12 Total: -5.99 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -6.16 Total: -84.53 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.05 Total: -25.33 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.36 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -1.05 Total: -10.35 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.71 kcal Total: -73.49 1.65 -71.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690016968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.215 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds