Wall clock time and date at job start Tue Mar 31 2020 16:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31167 * 1 3 3 Cl 1.73599 * 120.00112 * 2 1 4 4 C 1.50701 * 119.99698 * 180.02562 * 2 1 3 5 5 N 1.46896 * 109.47437 * 115.00013 * 4 2 1 6 6 C 1.46908 * 110.99906 * 293.95326 * 5 4 2 7 7 C 1.46893 * 111.00453 * 169.99545 * 5 4 2 8 8 C 1.53002 * 109.47524 * 196.05347 * 7 5 4 9 9 H 1.08998 * 109.99898 * 305.13687 * 8 7 5 10 10 C 1.54322 * 109.76775 * 66.28782 * 8 7 5 11 11 C 1.55156 * 102.85831 * 141.88854 * 10 8 7 12 12 C 1.54905 * 101.58218 * 324.29773 * 11 10 8 13 13 N 1.47015 * 109.88311 * 184.03309 * 8 7 5 14 14 C 1.34782 * 125.64865 * 61.68206 * 13 8 7 15 15 O 1.21285 * 119.99725 * 354.57793 * 14 13 8 16 16 C 1.50696 * 120.00160 * 174.57839 * 14 13 8 17 17 S 1.81000 * 109.47237 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00269 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99534 * 359.97438 * 18 17 16 20 20 C 1.38791 * 120.00281 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99990 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00202 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47120 * 89.99638 * 22 20 18 24 24 H 1.48502 * 109.46824 * 209.99664 * 22 20 18 25 25 H 1.48494 * 109.46856 * 329.99799 * 22 20 18 26 26 H 1.07997 * 120.00129 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99757 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47191 * 354.99798 * 4 2 1 29 29 H 1.09004 * 109.46578 * 235.00087 * 4 2 1 30 30 H 1.08998 * 109.46852 * 291.07982 * 6 5 4 31 31 H 1.08999 * 109.46816 * 51.07245 * 6 5 4 32 32 H 1.08998 * 109.46998 * 171.07952 * 6 5 4 33 33 H 1.09008 * 109.46995 * 76.05645 * 7 5 4 34 34 H 1.09002 * 109.47364 * 316.05960 * 7 5 4 35 35 H 1.08990 * 110.92782 * 23.47085 * 10 8 7 36 36 H 1.09001 * 110.73987 * 260.21310 * 10 8 7 37 37 H 1.08998 * 111.00151 * 206.22754 * 11 10 8 38 38 H 1.08995 * 111.04189 * 82.39185 * 11 10 8 39 39 H 1.08999 * 110.37289 * 278.17695 * 12 11 10 40 40 H 1.08999 * 110.36648 * 155.85203 * 12 11 10 41 41 H 1.09000 * 109.47419 * 59.99844 * 16 14 13 42 42 H 1.09007 * 109.46884 * 300.00019 * 16 14 13 43 43 H 0.97001 * 120.00199 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3117 0.0000 0.0000 3 17 2.1797 1.5034 0.0000 4 6 2.0651 -1.3051 -0.0006 5 7 2.8168 -1.4361 -1.2558 6 6 1.9079 -1.5568 -2.4036 7 6 3.7450 -2.5731 -1.1975 8 6 4.7751 -2.4489 -2.3220 9 1 4.2687 -2.3542 -3.2826 10 6 5.6719 -1.2176 -2.0748 11 6 7.0701 -1.7115 -2.5314 12 6 7.0362 -3.1951 -2.0871 13 7 5.6493 -3.6309 -2.3320 14 6 5.2499 -4.9017 -2.5370 15 8 4.0685 -5.1574 -2.6369 16 6 6.2711 -6.0049 -2.6420 17 16 5.4283 -7.5832 -2.9158 18 6 6.8187 -8.6623 -2.9983 19 1 7.8173 -8.2658 -2.8880 20 6 6.6308 -10.0217 -3.2060 21 7 5.4138 -10.5048 -3.3408 22 14 8.1049 -11.1659 -3.2927 23 1 8.4209 -11.6701 -1.9322 24 1 7.7908 -12.3110 -4.1845 25 1 9.2747 -10.4260 -3.8305 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.3601 -2.1317 0.0886 29 1 2.7572 -1.3254 0.8413 30 1 1.3933 -2.5167 -2.3602 31 1 1.1754 -0.7502 -2.3733 32 1 2.4807 -1.4931 -3.3288 33 1 3.1885 -3.5029 -1.3156 34 1 4.2565 -2.5757 -0.2349 35 1 5.6834 -0.9503 -1.0182 36 1 5.3441 -0.3733 -2.6813 37 1 7.8632 -1.1680 -2.0180 38 1 7.1800 -1.6299 -3.6127 39 1 7.2789 -3.2796 -1.0278 40 1 7.7306 -3.7859 -2.6845 41 1 6.8473 -6.0558 -1.7182 42 1 6.9411 -5.8015 -3.4774 43 1 5.2825 -11.4548 -3.4864 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700349867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:04 Heat of formation + Delta-G solvation = -15.924524 kcal Electronic energy + Delta-G solvation = -23969.680927 eV Core-core repulsion = 20395.594065 eV Total energy + Delta-G solvation = -3574.086862 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.10084 -38.19958 -37.11894 -36.42253 -33.44946 -32.44056 -31.72110 -30.33569 -28.55504 -27.71769 -25.98329 -25.49927 -23.29901 -22.02892 -20.82558 -20.24601 -18.90225 -17.66151 -16.95370 -16.44641 -16.13767 -15.47632 -15.34935 -14.85837 -14.80980 -14.47401 -14.31813 -13.85440 -13.75765 -13.43002 -13.12800 -12.83703 -12.68351 -12.55467 -12.34988 -12.14929 -11.98318 -11.84737 -11.64496 -11.51715 -11.27037 -11.07328 -11.03725 -11.02782 -10.80339 -10.77201 -10.73217 -9.82162 -9.49442 -9.37941 -9.07640 -8.64655 -8.37197 -8.24264 -6.51269 -6.22723 -3.93304 1.53727 2.03196 2.88271 3.04817 3.21480 3.24711 3.29361 3.55448 3.89203 4.19361 4.35081 4.48733 4.51547 4.74964 4.92962 5.01598 5.11953 5.12562 5.16009 5.23139 5.26328 5.29761 5.35720 5.49386 5.54735 5.61848 5.66823 5.72106 5.74778 5.81741 5.85296 5.88538 5.88934 5.91815 5.99942 6.13999 6.19514 6.46505 6.77124 6.85745 7.58563 7.70866 8.34260 8.56359 9.22655 10.84723 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.002399 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.328551 B =11666.556275 C =12552.912953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.053 4.053 3 Cl -0.079 7.079 4 C 0.089 3.911 5 N -0.530 5.530 6 C 0.020 3.980 7 C 0.043 3.957 8 C 0.147 3.853 9 H 0.073 0.927 10 C -0.110 4.110 11 C -0.137 4.137 12 C 0.101 3.899 13 N -0.623 5.623 14 C 0.549 3.451 15 O -0.516 6.516 16 C -0.147 4.147 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 24.269 6.048 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.080 4.080 3 Cl -0.051 7.051 4 C -0.039 4.039 5 N -0.254 5.254 6 C -0.128 4.128 7 C -0.086 4.086 8 C 0.043 3.957 9 H 0.091 0.909 10 C -0.148 4.148 11 C -0.175 4.175 12 C -0.023 4.023 13 N -0.360 5.360 14 C 0.338 3.662 15 O -0.390 6.390 16 C -0.297 4.297 17 S 0.165 5.835 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.139 0.861 27 H 0.130 0.870 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.759 24.162 5.783 25.296 hybrid contribution 1.893 -1.085 0.175 2.188 sum -2.867 23.077 5.958 24.006 Atomic orbital electron populations 1.24067 0.93903 1.03709 1.00377 1.23240 0.93402 0.88150 1.03212 1.98371 1.78276 1.31754 1.96713 1.21266 0.97002 0.91852 0.93786 1.61895 1.18491 1.42810 1.02219 1.22469 0.96064 1.00383 0.93847 1.22554 0.94514 0.92384 0.99131 1.21389 0.91143 0.84818 0.98377 0.90879 1.22529 0.93429 0.96424 1.02447 1.22828 0.97925 0.94954 1.01805 1.22295 0.83763 0.95358 1.00838 1.48593 1.08509 1.05766 1.73178 1.20030 0.89727 0.81351 0.75132 1.90680 1.17937 1.81703 1.48693 1.23513 1.01356 1.00115 1.04752 1.85368 1.11104 0.92779 1.94238 1.22855 0.93537 0.94453 1.57398 0.90947 1.24991 0.96761 0.97276 0.94562 1.70018 1.20333 1.14116 1.45860 0.86168 0.81449 0.79688 0.78204 1.20262 1.20744 1.19683 0.86094 0.86961 0.92440 0.89166 0.94909 0.91534 0.91038 0.92076 0.90840 0.90437 0.90137 0.90033 0.90712 0.91472 0.90378 0.89395 0.89314 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 13.78 28.97 0.40 -0.85 16 2 C -0.05 -0.44 4.84 -36.07 -0.17 -0.62 16 3 Cl -0.08 -0.72 28.99 -51.86 -1.50 -2.22 16 4 C 0.09 0.80 5.27 -4.98 -0.03 0.78 16 5 N -0.53 -5.46 4.48 -244.37 -1.10 -6.55 16 6 C 0.02 0.21 9.23 60.07 0.55 0.77 16 7 C 0.04 0.52 4.36 -3.83 -0.02 0.50 16 8 C 0.15 1.80 2.95 -66.96 -0.20 1.60 16 9 H 0.07 0.98 6.72 -51.93 -0.35 0.64 16 10 C -0.11 -1.02 6.25 -24.90 -0.16 -1.17 16 11 C -0.14 -1.16 7.08 -24.59 -0.17 -1.33 16 12 C 0.10 1.09 6.74 -2.53 -0.02 1.07 16 13 N -0.62 -8.95 3.07 -163.03 -0.50 -9.45 16 14 C 0.55 10.46 7.69 -10.99 -0.08 10.38 16 15 O -0.52 -11.59 14.65 5.55 0.08 -11.51 16 16 C -0.15 -3.01 5.09 36.00 0.18 -2.82 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 22 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.12 0.71 7.84 -52.49 -0.41 0.30 16 27 H 0.11 0.68 8.06 -52.49 -0.42 0.25 16 28 H 0.06 0.52 7.77 -51.93 -0.40 0.11 16 29 H 0.09 0.78 7.86 -51.93 -0.41 0.38 16 30 H 0.03 0.38 8.01 -51.93 -0.42 -0.04 16 31 H 0.07 0.61 6.84 -51.93 -0.35 0.26 16 32 H 0.07 0.75 6.82 -51.93 -0.35 0.40 16 33 H 0.06 0.96 6.39 -51.92 -0.33 0.62 16 34 H 0.07 0.86 7.71 -51.93 -0.40 0.46 16 35 H 0.08 0.70 7.79 -51.93 -0.40 0.29 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.84 7.47 -51.93 -0.39 0.45 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.71 7.96 -51.91 -0.41 1.29 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -33.01 378.21 -10.05 -43.06 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.72 Total: -1.47 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 0.49 Total: -4.60 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: -0.86 Total: -41.42 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.01 -10.05 -43.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700349867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.134 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds