Wall clock time and date at job start Tue Mar 31 2020 16:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31167 * 1 3 3 Cl 1.73599 * 120.00112 * 2 1 4 4 C 1.50701 * 119.99698 * 180.02562 * 2 1 3 5 5 N 1.46896 * 109.47437 * 115.00013 * 4 2 1 6 6 C 1.46908 * 110.99906 * 293.95326 * 5 4 2 7 7 C 1.46893 * 111.00453 * 169.99545 * 5 4 2 8 8 C 1.53002 * 109.47524 * 196.05347 * 7 5 4 9 9 H 1.08998 * 109.99898 * 305.13687 * 8 7 5 10 10 C 1.54322 * 109.76775 * 66.28782 * 8 7 5 11 11 C 1.55156 * 102.85831 * 141.88854 * 10 8 7 12 12 C 1.54905 * 101.58218 * 324.29773 * 11 10 8 13 13 N 1.47015 * 109.88311 * 184.03309 * 8 7 5 14 14 C 1.34782 * 125.64865 * 61.68206 * 13 8 7 15 15 O 1.21285 * 119.99725 * 354.57793 * 14 13 8 16 16 C 1.50696 * 120.00160 * 174.57839 * 14 13 8 17 17 S 1.81000 * 109.47237 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00269 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99534 * 359.97438 * 18 17 16 20 20 C 1.38791 * 120.00281 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99990 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00202 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47120 * 89.99638 * 22 20 18 24 24 H 1.48502 * 109.46824 * 209.99664 * 22 20 18 25 25 H 1.48494 * 109.46856 * 329.99799 * 22 20 18 26 26 H 1.07997 * 120.00129 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99757 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47191 * 354.99798 * 4 2 1 29 29 H 1.09004 * 109.46578 * 235.00087 * 4 2 1 30 30 H 1.08998 * 109.46852 * 291.07982 * 6 5 4 31 31 H 1.08999 * 109.46816 * 51.07245 * 6 5 4 32 32 H 1.08998 * 109.46998 * 171.07952 * 6 5 4 33 33 H 1.09008 * 109.46995 * 76.05645 * 7 5 4 34 34 H 1.09002 * 109.47364 * 316.05960 * 7 5 4 35 35 H 1.08990 * 110.92782 * 23.47085 * 10 8 7 36 36 H 1.09001 * 110.73987 * 260.21310 * 10 8 7 37 37 H 1.08998 * 111.00151 * 206.22754 * 11 10 8 38 38 H 1.08995 * 111.04189 * 82.39185 * 11 10 8 39 39 H 1.08999 * 110.37289 * 278.17695 * 12 11 10 40 40 H 1.08999 * 110.36648 * 155.85203 * 12 11 10 41 41 H 1.09000 * 109.47419 * 59.99844 * 16 14 13 42 42 H 1.09007 * 109.46884 * 300.00019 * 16 14 13 43 43 H 0.97001 * 120.00199 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3117 0.0000 0.0000 3 17 2.1797 1.5034 0.0000 4 6 2.0651 -1.3051 -0.0006 5 7 2.8168 -1.4361 -1.2558 6 6 1.9079 -1.5568 -2.4036 7 6 3.7450 -2.5731 -1.1975 8 6 4.7751 -2.4489 -2.3220 9 1 4.2687 -2.3542 -3.2826 10 6 5.6719 -1.2176 -2.0748 11 6 7.0701 -1.7115 -2.5314 12 6 7.0362 -3.1951 -2.0871 13 7 5.6493 -3.6309 -2.3320 14 6 5.2499 -4.9017 -2.5370 15 8 4.0685 -5.1574 -2.6369 16 6 6.2711 -6.0049 -2.6420 17 16 5.4283 -7.5832 -2.9158 18 6 6.8187 -8.6623 -2.9983 19 1 7.8173 -8.2658 -2.8880 20 6 6.6308 -10.0217 -3.2060 21 7 5.4138 -10.5048 -3.3408 22 14 8.1049 -11.1659 -3.2927 23 1 8.4209 -11.6701 -1.9322 24 1 7.7908 -12.3110 -4.1845 25 1 9.2747 -10.4260 -3.8305 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.3601 -2.1317 0.0886 29 1 2.7572 -1.3254 0.8413 30 1 1.3933 -2.5167 -2.3602 31 1 1.1754 -0.7502 -2.3733 32 1 2.4807 -1.4931 -3.3288 33 1 3.1885 -3.5029 -1.3156 34 1 4.2565 -2.5757 -0.2349 35 1 5.6834 -0.9503 -1.0182 36 1 5.3441 -0.3733 -2.6813 37 1 7.8632 -1.1680 -2.0180 38 1 7.1800 -1.6299 -3.6127 39 1 7.2789 -3.2796 -1.0278 40 1 7.7306 -3.7859 -2.6845 41 1 6.8473 -6.0558 -1.7182 42 1 6.9411 -5.8015 -3.4774 43 1 5.2825 -11.4548 -3.4864 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700349867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:03 Heat of formation + Delta-G solvation = -36.801499 kcal Electronic energy + Delta-G solvation = -23970.586221 eV Core-core repulsion = 20395.594065 eV Total energy + Delta-G solvation = -3574.992156 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.28494 -39.19551 -38.19663 -37.18049 -34.60149 -34.18358 -32.90869 -31.29839 -29.97105 -28.52052 -27.67752 -26.84830 -24.33278 -22.91582 -21.79011 -20.91768 -20.29932 -19.45198 -18.22294 -17.51141 -16.98963 -16.89425 -16.51046 -16.36621 -16.17616 -15.82245 -15.32005 -15.19470 -14.69799 -14.57732 -14.22546 -13.99636 -13.97362 -13.61741 -13.39080 -13.21011 -13.13059 -12.92004 -12.89333 -12.70375 -12.61443 -12.44214 -12.35770 -12.05267 -11.81317 -11.72925 -11.61583 -11.51436 -11.15558 -10.91551 -10.29784 -10.10417 -9.75078 -9.38300 -8.69190 -8.36093 -6.14628 0.92514 1.23258 1.39361 1.41679 1.44117 1.55306 1.55772 2.06006 2.26125 2.94867 2.98090 3.25185 3.57743 3.65945 3.70335 3.86171 3.99377 4.17734 4.22494 4.26097 4.28520 4.35765 4.42319 4.45368 4.57530 4.62938 4.69480 4.73257 4.79295 4.89092 4.95995 5.05038 5.08437 5.19029 5.19357 5.27452 5.39344 5.40257 5.46208 5.89066 5.94744 6.18360 6.42706 7.05081 7.12718 8.73199 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.002399 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.328551 B =11666.556275 C =12552.912953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.070 4.070 3 Cl -0.086 7.086 4 C 0.089 3.911 5 N -0.522 5.522 6 C 0.025 3.975 7 C 0.053 3.947 8 C 0.142 3.858 9 H 0.058 0.942 10 C -0.098 4.098 11 C -0.125 4.125 12 C 0.088 3.912 13 N -0.614 5.614 14 C 0.546 3.454 15 O -0.561 6.561 16 C -0.120 4.120 17 S -0.150 6.150 18 C -0.545 4.545 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.258 1.258 26 H 0.131 0.869 27 H 0.124 0.876 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.014 0.986 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.020 0.980 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 26.224 6.654 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 Cl -0.058 7.058 4 C -0.039 4.039 5 N -0.246 5.246 6 C -0.123 4.123 7 C -0.076 4.076 8 C 0.038 3.962 9 H 0.076 0.924 10 C -0.136 4.136 11 C -0.162 4.162 12 C -0.033 4.033 13 N -0.349 5.349 14 C 0.334 3.666 15 O -0.440 6.440 16 C -0.271 4.271 17 S 0.077 5.923 18 C -0.693 4.693 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.182 1.182 26 H 0.149 0.851 27 H 0.142 0.858 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.618 26.179 6.402 27.078 hybrid contribution 1.172 -1.553 0.018 1.945 sum -1.447 24.627 6.420 25.491 Atomic orbital electron populations 1.24285 0.93454 1.04743 0.97832 1.23131 0.93674 0.87428 1.05404 1.98366 1.78543 1.32008 1.96885 1.21292 0.97070 0.92445 0.93108 1.61940 1.18529 1.41215 1.02877 1.22424 0.96164 0.99896 0.93800 1.22371 0.94553 0.91311 0.99362 1.21577 0.91625 0.85262 0.97694 0.92368 1.22484 0.93082 0.94787 1.03274 1.22825 0.98104 0.93013 1.02289 1.22672 0.81425 0.97160 1.02074 1.48558 1.10801 1.04661 1.70880 1.19764 0.88653 0.82667 0.75508 1.90668 1.19428 1.82720 1.51162 1.23308 1.01118 0.96612 1.06032 1.85550 1.14197 0.97822 1.94700 1.23183 0.93673 0.95022 1.57418 0.89970 1.26140 1.00133 0.99148 0.93743 1.70184 1.23035 1.14649 1.46941 0.84945 0.77339 0.77045 0.78607 1.19234 1.20270 1.18153 0.85140 0.85794 0.92644 0.88800 0.96763 0.90046 0.91448 0.96127 0.90209 0.89553 0.89063 0.87042 0.90508 0.89892 0.90022 0.87721 0.87788 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 13.78 67.61 0.93 -1.03 16 2 C -0.07 -1.06 4.84 25.48 0.12 -0.94 16 3 Cl -0.09 -1.42 28.99 -2.72 -0.08 -1.50 16 4 C 0.09 1.54 5.27 85.56 0.45 1.99 16 5 N -0.52 -10.53 4.48 -927.04 -4.16 -14.68 16 6 C 0.03 0.53 9.23 127.69 1.18 1.71 16 7 C 0.05 1.31 4.36 86.31 0.38 1.68 16 8 C 0.14 3.39 2.95 45.34 0.13 3.52 16 9 H 0.06 1.58 6.72 -2.39 -0.02 1.57 16 10 C -0.10 -1.54 6.25 31.78 0.20 -1.34 16 11 C -0.12 -1.65 7.08 31.98 0.23 -1.43 16 12 C 0.09 1.68 6.74 86.85 0.59 2.27 16 13 N -0.61 -17.18 3.07 -788.08 -2.42 -19.60 16 14 C 0.55 21.19 7.69 87.65 0.67 21.87 16 15 O -0.56 -26.57 14.65 -3.05 -0.04 -26.61 16 16 C -0.12 -4.91 5.09 71.23 0.36 -4.55 16 17 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 18 C -0.55 -31.33 9.50 67.95 0.65 -30.68 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.75 5.49 84.86 0.47 1.21 16 21 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 22 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 26 H 0.13 1.32 7.84 -2.91 -0.02 1.30 16 27 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 28 H 0.06 0.99 7.77 -2.39 -0.02 0.97 16 29 H 0.09 1.55 7.86 -2.39 -0.02 1.53 16 30 H 0.01 0.34 8.01 -2.39 -0.02 0.32 16 31 H 0.08 1.44 6.84 -2.39 -0.02 1.42 16 32 H 0.07 1.45 6.82 -2.39 -0.02 1.43 16 33 H 0.02 0.68 6.39 -2.38 -0.02 0.67 16 34 H 0.08 1.84 7.71 -2.39 -0.02 1.82 16 35 H 0.09 1.26 7.79 -2.39 -0.02 1.24 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.53 7.47 -2.39 -0.02 1.51 16 41 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 42 H 0.10 3.93 7.96 -2.39 -0.02 3.91 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -74.80 378.21 1.80 -73.00 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.99 Total: 15.02 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 6.35 Total: -5.72 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -6.29 Total: -90.26 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.04 Total: -26.61 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -74.80 1.80 -73.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700349867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.200 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds