Wall clock time and date at job start Tue Mar 31 2020 16:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31153 * 1 3 3 Cl 1.73599 * 120.00228 * 2 1 4 4 C 1.50707 * 119.99954 * 180.02562 * 2 1 3 5 5 N 1.46900 * 109.46999 * 115.00289 * 4 2 1 6 6 C 1.48720 * 111.01831 * 74.48981 * 5 4 2 7 7 C 1.54381 * 104.51692 * 158.96284 * 6 5 4 8 8 C 1.54257 * 105.14978 * 336.27274 * 7 6 5 9 9 H 1.09009 * 110.32136 * 241.05045 * 8 7 6 10 10 N 1.46492 * 110.32759 * 118.84641 * 8 7 6 11 11 C 1.46499 * 120.00341 * 121.45017 * 10 8 7 12 12 C 1.53003 * 109.46960 * 90.00088 * 11 10 8 13 13 C 1.34779 * 119.99741 * 301.45259 * 10 8 7 14 14 O 1.21282 * 120.00217 * 359.97438 * 13 10 8 15 15 C 1.50697 * 120.00059 * 180.02562 * 13 10 8 16 16 S 1.81001 * 109.47295 * 179.97438 * 15 13 10 17 17 C 1.76200 * 99.99974 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00279 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99458 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00484 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99672 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46821 * 89.99987 * 21 19 17 23 23 H 1.48498 * 109.47166 * 210.00155 * 21 19 17 24 24 H 1.48507 * 109.47074 * 330.00369 * 21 19 17 25 25 C 1.48567 * 110.99718 * 189.99963 * 5 4 2 26 26 H 1.08002 * 119.99788 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00071 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47211 * 354.99700 * 4 2 1 29 29 H 1.08999 * 109.46541 * 234.99890 * 4 2 1 30 30 H 1.09004 * 110.38960 * 40.24251 * 6 5 4 31 31 H 1.08996 * 110.50963 * 277.74694 * 6 5 4 32 32 H 1.09002 * 110.32526 * 217.32092 * 7 6 5 33 33 H 1.08998 * 110.32190 * 95.21733 * 7 6 5 34 34 H 1.09006 * 109.47258 * 210.00069 * 11 10 8 35 35 H 1.08997 * 109.47248 * 330.00111 * 11 10 8 36 36 H 1.08995 * 109.47461 * 60.00364 * 12 11 10 37 37 H 1.09004 * 109.46800 * 179.97438 * 12 11 10 38 38 H 1.08994 * 109.47259 * 299.99646 * 12 11 10 39 39 H 1.08997 * 109.47364 * 299.99961 * 15 13 10 40 40 H 1.09006 * 109.47243 * 59.99550 * 15 13 10 41 41 H 0.97001 * 120.00026 * 179.97438 * 20 19 17 42 42 H 1.08999 * 110.41133 * 82.17552 * 25 5 4 43 43 H 1.09001 * 110.41003 * 319.73948 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3052 -0.0006 5 7 2.8168 -1.4360 -1.2558 6 6 4.0100 -0.5482 -1.2580 7 6 4.9485 -1.1638 -2.3180 8 6 4.5324 -2.6462 -2.4127 9 1 5.3669 -3.2918 -2.1387 10 7 4.0688 -2.9592 -3.7666 11 6 4.7342 -4.0070 -4.5448 12 6 4.0537 -5.3510 -4.2770 13 6 3.0302 -2.2831 -4.2964 14 8 2.4790 -1.4160 -3.6520 15 6 2.5529 -2.6055 -5.6889 16 16 1.1548 -1.5359 -6.1103 17 6 0.8090 -2.1119 -7.7392 18 1 1.4044 -2.9032 -8.1699 19 6 -0.2288 -1.5485 -8.4687 20 7 -0.9549 -0.5843 -7.9435 21 14 -0.5951 -2.1586 -10.1959 22 1 -1.5764 -3.2712 -10.1300 23 1 -1.1595 -1.0479 -11.0039 24 1 0.6595 -2.6418 -10.8266 25 6 3.3775 -2.8041 -1.4005 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.3602 -2.1317 0.0887 29 1 2.7572 -1.3254 0.8412 30 1 4.4883 -0.5525 -0.2785 31 1 3.7305 0.4665 -1.5411 32 1 5.9871 -1.0817 -1.9976 33 1 4.8094 -0.6695 -3.2795 34 1 4.6655 -3.7701 -5.6066 35 1 5.7827 -4.0661 -4.2528 36 1 3.0053 -5.2920 -4.5690 37 1 4.5485 -6.1305 -4.8564 38 1 4.1225 -5.5879 -3.2153 39 1 3.3638 -2.4404 -6.3983 40 1 2.2384 -3.6483 -5.7330 41 1 -1.6799 -0.1904 -8.4535 42 1 2.6212 -3.4857 -1.7899 43 1 3.7569 -3.1626 -0.4436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714028163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:30 Heat of formation + Delta-G solvation = 4.621721 kcal Electronic energy + Delta-G solvation = -24931.802906 eV Core-core repulsion = 21358.606996 eV Total energy + Delta-G solvation = -3573.195910 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.15745 -37.94186 -36.52137 -35.42404 -33.83662 -32.36643 -31.20618 -29.72580 -29.25142 -27.70305 -25.48071 -25.22661 -23.16107 -21.49939 -21.41070 -19.75487 -18.51700 -17.45798 -16.65630 -16.37438 -15.84173 -15.52078 -14.96499 -14.75227 -14.63929 -14.15209 -13.74032 -13.67233 -13.48415 -13.16157 -12.91301 -12.73636 -12.46374 -12.36448 -12.26611 -11.93725 -11.65601 -11.59682 -11.47723 -11.38578 -11.12042 -11.02236 -10.94796 -10.87945 -10.84792 -10.69199 -10.39258 -9.72442 -9.05168 -9.00534 -8.89497 -8.37652 -8.10590 -8.04199 -6.39697 -6.15376 -3.83943 1.98990 2.37930 3.06466 3.25255 3.29983 3.33774 3.37463 3.72152 4.13714 4.27214 4.59465 4.63975 4.80826 4.94632 5.09560 5.12027 5.19359 5.24929 5.26904 5.29082 5.36200 5.43589 5.51311 5.59802 5.65156 5.69526 5.75289 5.82966 5.88598 5.91077 6.05227 6.13906 6.15038 6.18524 6.30101 6.32828 6.38461 6.85009 7.06756 7.12502 7.65235 7.80085 8.41219 8.92190 9.29971 10.91862 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.003885 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.695444 B = 7205.622548 C = 8957.709877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.054 4.054 3 Cl -0.092 7.092 4 C 0.081 3.919 5 N -0.462 5.462 6 C 0.040 3.960 7 C -0.131 4.131 8 C 0.152 3.848 9 H 0.089 0.911 10 N -0.620 5.620 11 C 0.108 3.892 12 C -0.171 4.171 13 C 0.517 3.483 14 O -0.457 6.457 15 C -0.149 4.149 16 S -0.058 6.058 17 C -0.534 4.534 18 H 0.070 0.930 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.915 3.085 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.273 1.273 25 C 0.028 3.972 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.267 0.733 42 H 0.083 0.917 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 -5.735 16.476 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 Cl -0.064 7.064 4 C -0.047 4.047 5 N -0.185 5.185 6 C -0.088 4.088 7 C -0.170 4.170 8 C 0.047 3.953 9 H 0.107 0.893 10 N -0.358 5.358 11 C -0.015 4.015 12 C -0.230 4.230 13 C 0.302 3.698 14 O -0.326 6.326 15 C -0.300 4.300 16 S 0.169 5.831 17 C -0.683 4.683 18 H 0.088 0.912 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.742 3.258 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.101 4.101 26 H 0.140 0.860 27 H 0.129 0.871 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.784 -4.035 16.977 20.514 hybrid contribution 0.982 -1.637 -1.320 2.321 sum 11.766 -5.673 15.657 20.391 Atomic orbital electron populations 1.23945 0.93785 1.03571 0.99014 1.23053 0.93703 0.87024 1.04254 1.98347 1.78101 1.33108 1.96820 1.21412 0.97864 0.93414 0.92053 1.65702 1.19571 1.03345 1.29893 1.23236 0.89963 0.99184 0.96412 1.22687 0.97935 0.95280 1.01089 1.21577 0.95133 0.96091 0.82502 0.89329 1.48131 1.34431 1.38328 1.14861 1.21489 0.95988 0.87187 0.96856 1.22232 1.02006 0.97056 1.01688 1.20258 0.79366 0.82120 0.88012 1.90895 1.53068 1.28649 1.60011 1.23600 1.04897 1.05536 0.95943 1.85385 1.33218 1.46571 1.17929 1.22883 1.20173 1.24304 1.00915 0.91188 1.24960 0.95121 0.94732 0.98678 1.70021 1.19038 1.23861 1.37402 0.86226 0.78591 0.78419 0.82610 1.20341 1.20802 1.19747 1.23444 0.97127 0.92376 0.97176 0.86034 0.87128 0.89113 0.93834 0.94822 0.89196 0.91643 0.89998 0.90158 0.91113 0.91971 0.91924 0.92722 0.90049 0.89945 0.92302 0.89817 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 14.04 28.97 0.41 -1.59 16 2 C -0.05 -0.70 6.03 -36.06 -0.22 -0.92 16 3 Cl -0.09 -1.23 26.19 -51.86 -1.36 -2.58 16 4 C 0.08 0.98 5.22 -4.97 -0.03 0.96 16 5 N -0.46 -6.59 3.08 -231.26 -0.71 -7.30 16 6 C 0.04 0.53 5.13 -2.09 -0.01 0.52 16 7 C -0.13 -1.64 6.03 -25.35 -0.15 -1.79 16 8 C 0.15 1.78 3.57 -66.56 -0.24 1.54 16 9 H 0.09 0.79 7.86 -51.92 -0.41 0.38 16 10 N -0.62 -8.45 2.41 -164.54 -0.40 -8.84 16 11 C 0.11 1.16 5.91 -4.04 -0.02 1.13 16 12 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 13 C 0.52 9.54 6.76 -10.99 -0.07 9.47 16 14 O -0.46 -9.81 11.82 5.56 0.07 -9.75 16 15 C -0.15 -3.06 4.71 36.00 0.17 -2.89 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 21 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.03 0.34 5.47 -2.18 -0.01 0.33 16 26 H 0.12 1.31 7.84 -52.49 -0.41 0.90 16 27 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.09 1.01 7.74 -51.93 -0.40 0.61 16 29 H 0.04 0.46 7.77 -51.93 -0.40 0.06 16 30 H 0.03 0.39 7.75 -51.93 -0.40 -0.01 16 31 H 0.09 1.37 6.33 -51.93 -0.33 1.04 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.27 7.11 -51.93 -0.37 0.90 16 34 H 0.08 0.91 6.44 -51.93 -0.33 0.58 16 35 H 0.07 0.58 7.95 -51.93 -0.41 0.17 16 36 H 0.06 0.75 7.22 -51.93 -0.37 0.37 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 1.59 7.40 -51.92 -0.38 1.20 16 40 H 0.08 1.61 7.19 -51.91 -0.37 1.23 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.08 1.16 7.98 -51.93 -0.41 0.74 16 43 H 0.04 0.41 8.00 -51.93 -0.42 0.00 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -33.68 369.46 -9.61 -43.29 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.67 Total: 0.11 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 0.40 Total: -7.60 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.38 Total: -41.85 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.36 Total: -2.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.68 -9.61 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714028163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.908 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds