Wall clock time and date at job start Tue Mar 31 2020 16:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31153 * 1 3 3 Cl 1.73599 * 120.00228 * 2 1 4 4 C 1.50707 * 119.99954 * 180.02562 * 2 1 3 5 5 N 1.46900 * 109.46999 * 115.00289 * 4 2 1 6 6 C 1.48720 * 111.01831 * 74.48981 * 5 4 2 7 7 C 1.54381 * 104.51692 * 158.96284 * 6 5 4 8 8 C 1.54257 * 105.14978 * 336.27274 * 7 6 5 9 9 H 1.09009 * 110.32136 * 241.05045 * 8 7 6 10 10 N 1.46492 * 110.32759 * 118.84641 * 8 7 6 11 11 C 1.46499 * 120.00341 * 121.45017 * 10 8 7 12 12 C 1.53003 * 109.46960 * 90.00088 * 11 10 8 13 13 C 1.34779 * 119.99741 * 301.45259 * 10 8 7 14 14 O 1.21282 * 120.00217 * 359.97438 * 13 10 8 15 15 C 1.50697 * 120.00059 * 180.02562 * 13 10 8 16 16 S 1.81001 * 109.47295 * 179.97438 * 15 13 10 17 17 C 1.76200 * 99.99974 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00279 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99458 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00484 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99672 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46821 * 89.99987 * 21 19 17 23 23 H 1.48498 * 109.47166 * 210.00155 * 21 19 17 24 24 H 1.48507 * 109.47074 * 330.00369 * 21 19 17 25 25 C 1.48567 * 110.99718 * 189.99963 * 5 4 2 26 26 H 1.08002 * 119.99788 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00071 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47211 * 354.99700 * 4 2 1 29 29 H 1.08999 * 109.46541 * 234.99890 * 4 2 1 30 30 H 1.09004 * 110.38960 * 40.24251 * 6 5 4 31 31 H 1.08996 * 110.50963 * 277.74694 * 6 5 4 32 32 H 1.09002 * 110.32526 * 217.32092 * 7 6 5 33 33 H 1.08998 * 110.32190 * 95.21733 * 7 6 5 34 34 H 1.09006 * 109.47258 * 210.00069 * 11 10 8 35 35 H 1.08997 * 109.47248 * 330.00111 * 11 10 8 36 36 H 1.08995 * 109.47461 * 60.00364 * 12 11 10 37 37 H 1.09004 * 109.46800 * 179.97438 * 12 11 10 38 38 H 1.08994 * 109.47259 * 299.99646 * 12 11 10 39 39 H 1.08997 * 109.47364 * 299.99961 * 15 13 10 40 40 H 1.09006 * 109.47243 * 59.99550 * 15 13 10 41 41 H 0.97001 * 120.00026 * 179.97438 * 20 19 17 42 42 H 1.08999 * 110.41133 * 82.17552 * 25 5 4 43 43 H 1.09001 * 110.41003 * 319.73948 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3052 -0.0006 5 7 2.8168 -1.4360 -1.2558 6 6 4.0100 -0.5482 -1.2580 7 6 4.9485 -1.1638 -2.3180 8 6 4.5324 -2.6462 -2.4127 9 1 5.3669 -3.2918 -2.1387 10 7 4.0688 -2.9592 -3.7666 11 6 4.7342 -4.0070 -4.5448 12 6 4.0537 -5.3510 -4.2770 13 6 3.0302 -2.2831 -4.2964 14 8 2.4790 -1.4160 -3.6520 15 6 2.5529 -2.6055 -5.6889 16 16 1.1548 -1.5359 -6.1103 17 6 0.8090 -2.1119 -7.7392 18 1 1.4044 -2.9032 -8.1699 19 6 -0.2288 -1.5485 -8.4687 20 7 -0.9549 -0.5843 -7.9435 21 14 -0.5951 -2.1586 -10.1959 22 1 -1.5764 -3.2712 -10.1300 23 1 -1.1595 -1.0479 -11.0039 24 1 0.6595 -2.6418 -10.8266 25 6 3.3775 -2.8041 -1.4005 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.3602 -2.1317 0.0887 29 1 2.7572 -1.3254 0.8412 30 1 4.4883 -0.5525 -0.2785 31 1 3.7305 0.4665 -1.5411 32 1 5.9871 -1.0817 -1.9976 33 1 4.8094 -0.6695 -3.2795 34 1 4.6655 -3.7701 -5.6066 35 1 5.7827 -4.0661 -4.2528 36 1 3.0053 -5.2920 -4.5690 37 1 4.5485 -6.1305 -4.8564 38 1 4.1225 -5.5879 -3.2153 39 1 3.3638 -2.4404 -6.3983 40 1 2.2384 -3.6483 -5.7330 41 1 -1.6799 -0.1904 -8.4535 42 1 2.6212 -3.4857 -1.7899 43 1 3.7569 -3.1626 -0.4436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714028163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:29 Heat of formation + Delta-G solvation = -15.797956 kcal Electronic energy + Delta-G solvation = -24932.688370 eV Core-core repulsion = 21358.606996 eV Total energy + Delta-G solvation = -3574.081374 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.30164 -39.07133 -37.57400 -36.59634 -34.81014 -34.56223 -32.19465 -30.91628 -30.45162 -28.83727 -27.62076 -26.26957 -24.12935 -22.55274 -22.40397 -20.74469 -20.12651 -19.08277 -17.82162 -17.52124 -16.93452 -16.86063 -16.59687 -16.25970 -15.83873 -15.63643 -14.94902 -14.63010 -14.54197 -14.50540 -14.41336 -14.05005 -13.60104 -13.35410 -13.23382 -13.12064 -13.02119 -12.90017 -12.74395 -12.61296 -12.58380 -12.51362 -12.29810 -12.03461 -11.87225 -11.77343 -11.65752 -11.40340 -11.12076 -10.33390 -10.17601 -10.04385 -9.49864 -9.00736 -8.59635 -8.32170 -6.08058 1.00074 1.30268 1.38610 1.41639 1.48908 1.60879 1.94200 2.24922 2.34273 3.01385 3.22118 3.34518 3.65311 3.69749 3.83676 4.01618 4.13020 4.23010 4.29753 4.33244 4.38886 4.47172 4.49902 4.56828 4.59091 4.68000 4.71727 4.74966 4.78559 4.94575 5.02559 5.06501 5.12558 5.22097 5.28272 5.40101 5.41527 5.42913 5.85655 6.11347 6.20356 6.21405 6.56509 7.09019 7.55105 8.76787 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.003885 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.695444 B = 7205.622548 C = 8957.709877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.070 4.070 3 Cl -0.101 7.101 4 C 0.084 3.916 5 N -0.497 5.497 6 C 0.044 3.956 7 C -0.128 4.128 8 C 0.150 3.850 9 H 0.134 0.866 10 N -0.607 5.607 11 C 0.102 3.898 12 C -0.165 4.165 13 C 0.517 3.483 14 O -0.494 6.494 15 C -0.123 4.123 16 S -0.143 6.143 17 C -0.547 4.547 18 H 0.077 0.923 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.994 3.006 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.259 1.259 25 C 0.031 3.969 26 H 0.134 0.866 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.033 0.967 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.270 0.730 42 H 0.062 0.938 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.267 -8.194 16.674 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 Cl -0.073 7.073 4 C -0.044 4.044 5 N -0.221 5.221 6 C -0.084 4.084 7 C -0.166 4.166 8 C 0.047 3.953 9 H 0.152 0.848 10 N -0.343 5.343 11 C -0.021 4.021 12 C -0.224 4.224 13 C 0.302 3.698 14 O -0.366 6.366 15 C -0.274 4.274 16 S 0.084 5.916 17 C -0.695 4.695 18 H 0.095 0.905 19 C -0.189 4.189 20 N -0.548 5.548 21 Si 0.816 3.184 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.183 1.183 25 C -0.098 4.098 26 H 0.152 0.848 27 H 0.130 0.870 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.023 -6.531 17.191 22.534 hybrid contribution 0.366 -0.902 -1.306 1.629 sum 13.388 -7.433 15.885 22.065 Atomic orbital electron populations 1.24148 0.93827 1.04290 0.98396 1.23361 0.94167 0.87298 1.04820 1.98339 1.78295 1.33785 1.96890 1.21429 0.98111 0.92857 0.92014 1.65584 1.20544 1.04589 1.31344 1.23129 0.90036 0.97733 0.97524 1.22659 0.99569 0.95378 0.99039 1.21907 0.96177 0.96385 0.80880 0.84837 1.48050 1.32625 1.37736 1.15865 1.21775 0.97819 0.86417 0.96059 1.22173 1.00257 0.97097 1.02841 1.19916 0.80559 0.82360 0.87006 1.90892 1.54782 1.30449 1.60485 1.23426 1.01929 1.03959 0.98099 1.85510 1.37545 1.49787 1.18708 1.23202 1.20617 1.24505 1.01172 0.90521 1.26069 0.94649 0.94656 1.03546 1.70185 1.19753 1.25374 1.39457 0.85019 0.78925 0.78012 0.76439 1.19270 1.20248 1.18298 1.23422 0.96638 0.91038 0.98655 0.84793 0.87015 0.88474 0.92020 0.92834 0.92111 0.88443 0.93673 0.91143 0.87304 0.94825 0.89835 0.91476 0.89073 0.88998 0.92091 0.91918 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 14.04 67.63 0.95 -3.20 16 2 C -0.07 -1.84 6.03 25.50 0.15 -1.69 16 3 Cl -0.10 -2.76 26.19 -2.72 -0.07 -2.83 16 4 C 0.08 1.96 5.22 85.56 0.45 2.41 16 5 N -0.50 -13.81 3.08 -885.58 -2.73 -16.53 16 6 C 0.04 1.12 5.13 86.42 0.44 1.56 16 7 C -0.13 -2.95 6.03 31.49 0.19 -2.76 16 8 C 0.15 3.04 3.57 45.89 0.16 3.20 16 9 H 0.13 1.58 7.86 -2.38 -0.02 1.56 16 10 N -0.61 -15.34 2.41 -792.88 -1.91 -17.25 16 11 C 0.10 1.84 5.91 86.38 0.51 2.35 16 12 C -0.17 -2.77 10.24 71.98 0.74 -2.03 16 13 C 0.52 19.14 6.76 87.66 0.59 19.73 16 14 O -0.49 -21.83 11.82 -3.04 -0.04 -21.87 16 15 C -0.12 -5.10 4.71 71.24 0.34 -4.76 16 16 S -0.14 -8.10 20.57 -56.49 -1.16 -9.26 16 17 C -0.55 -32.02 9.50 67.96 0.65 -31.37 16 18 H 0.08 4.21 7.80 -2.92 -0.02 4.19 16 19 C 0.02 0.90 5.49 84.86 0.47 1.37 16 20 N -0.91 -56.97 13.22 21.65 0.29 -56.69 16 21 Si 0.99 44.42 29.55 68.60 2.03 46.45 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 C 0.03 0.68 5.47 86.45 0.47 1.16 16 26 H 0.13 2.89 7.84 -2.91 -0.02 2.87 16 27 H 0.11 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.10 2.07 7.74 -2.39 -0.02 2.06 16 29 H 0.06 1.18 7.77 -2.39 -0.02 1.17 16 30 H 0.05 1.12 7.75 -2.38 -0.02 1.10 16 31 H 0.06 1.90 6.33 -2.39 -0.02 1.89 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.39 7.11 -2.39 -0.02 1.37 16 34 H 0.07 1.44 6.44 -2.38 -0.02 1.42 16 35 H 0.11 1.23 7.95 -2.39 -0.02 1.21 16 36 H 0.03 0.75 7.22 -2.39 -0.02 0.74 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 3.56 7.40 -2.40 -0.02 3.55 16 40 H 0.09 3.60 7.19 -2.39 -0.02 3.59 16 41 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.06 1.65 7.98 -2.39 -0.02 1.64 16 43 H 0.07 1.16 8.00 -2.39 -0.02 1.14 16 Total: -1.00 -77.18 369.46 3.51 -73.68 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.99 Total: 18.35 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 6.11 Total: -14.05 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -4.35 Total: -90.47 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.04 Total: -21.87 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Atomic # 17 Polarization: -2.76 SS G_CDS: -0.07 Total: -2.83 kcal Total: -77.18 3.51 -73.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714028163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.880 kcal (2) G-P(sol) polarization free energy of solvation -77.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds