Wall clock time and date at job start Tue Mar 31 2020 16:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99806 * 2 1 4 4 C 1.53002 * 109.47037 * 90.00107 * 3 2 1 5 5 H 1.09003 * 109.47095 * 59.99758 * 4 3 2 6 6 O 1.42902 * 109.47281 * 300.00210 * 4 3 2 7 7 C 1.52999 * 109.47051 * 179.97438 * 4 3 2 8 8 N 1.46510 * 109.46893 * 185.00088 * 7 4 3 9 9 C 1.36938 * 119.99623 * 180.02562 * 8 7 4 10 10 H 1.07997 * 119.99831 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99493 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00109 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47360 * 89.99743 * 13 11 9 15 15 H 1.48498 * 109.47481 * 209.99584 * 13 11 9 16 16 H 1.48503 * 109.47253 * 329.99873 * 13 11 9 17 17 C 1.34773 * 120.00020 * 180.02562 * 2 1 3 18 18 O 1.21590 * 120.00112 * 185.39295 * 17 2 1 19 19 C 1.47580 * 120.00142 * 5.38929 * 17 2 1 20 20 C 1.39732 * 120.13071 * 22.28001 * 19 17 2 21 21 C 1.37752 * 119.94474 * 179.97438 * 20 19 17 22 22 C 1.38714 * 120.21448 * 359.97438 * 21 20 19 23 23 F 1.35102 * 119.86737 * 180.02562 * 22 21 20 24 24 C 1.38666 * 120.26451 * 0.02562 * 22 21 20 25 25 F 1.35104 * 119.97090 * 179.97438 * 24 22 21 26 26 C 1.38380 * 120.05272 * 359.72430 * 24 22 21 27 27 F 1.35098 * 120.10762 * 180.27581 * 26 24 22 28 28 H 1.08995 * 109.46879 * 84.05063 * 1 2 3 29 29 H 1.09004 * 109.46681 * 204.05237 * 1 2 3 30 30 H 1.08997 * 109.47173 * 324.04753 * 1 2 3 31 31 H 1.08993 * 109.47357 * 330.00206 * 3 2 1 32 32 H 1.08999 * 109.47154 * 209.99892 * 3 2 1 33 33 H 0.96708 * 113.99565 * 299.99844 * 6 4 3 34 34 H 1.08993 * 109.47217 * 304.99833 * 7 4 3 35 35 H 1.08997 * 109.47090 * 65.00409 * 7 4 3 36 36 H 0.96997 * 119.99752 * 359.97438 * 8 7 4 37 37 H 0.96998 * 119.99842 * 180.02562 * 12 11 9 38 38 H 1.07997 * 120.03039 * 0.02562 * 20 19 17 39 39 H 1.08004 * 119.89284 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 3.0416 0.9507 1.9564 6 8 1.2039 1.8812 2.1162 7 6 3.2180 3.0351 1.4425 8 7 3.5664 3.3978 2.8186 9 6 4.2585 4.5528 3.0679 10 1 4.5477 5.1962 2.2501 11 6 4.5890 4.8961 4.3717 12 7 4.2369 4.1117 5.3682 13 14 5.5336 6.4713 4.7118 14 1 4.5763 7.5866 4.9243 15 1 6.3671 6.2960 5.9282 16 1 6.4084 6.7840 3.5531 17 6 2.1389 -1.1672 -0.0005 18 8 3.3508 -1.1696 0.0984 19 6 1.4060 -2.4424 -0.1211 20 6 0.1285 -2.4664 -0.6869 21 6 -0.5520 -3.6589 -0.7981 22 6 0.0269 -4.8373 -0.3505 23 9 -0.6466 -6.0031 -0.4635 24 6 1.2942 -4.8237 0.2123 25 9 1.8522 -5.9749 0.6467 26 6 1.9897 -3.6327 0.3247 27 9 3.2267 -3.6189 0.8678 28 1 -0.3633 0.1065 -1.0221 29 1 -0.3633 -0.9385 0.4189 30 1 -0.3633 0.8319 0.6033 31 1 1.6085 2.0284 -0.5138 32 1 3.1499 1.1384 -0.5138 33 1 0.6267 2.5439 1.7127 34 1 4.1287 2.9285 0.8533 35 1 2.5934 3.8157 1.0082 36 1 3.3063 2.8200 3.5531 37 1 4.4676 4.3518 6.2793 38 1 -0.3246 -1.5509 -1.0374 39 1 -1.5395 -3.6764 -1.2351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717926222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:15 Heat of formation + Delta-G solvation = -145.625045 kcal Electronic energy + Delta-G solvation = -28238.325096 eV Core-core repulsion = 23540.604140 eV Total energy + Delta-G solvation = -4697.720955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -50.18489 -49.58379 -48.82683 -40.81173 -38.71498 -37.47778 -35.54470 -34.04176 -31.98670 -31.23336 -31.14824 -29.32295 -27.32584 -25.88317 -24.10481 -23.71932 -22.70665 -21.28757 -20.38488 -18.76737 -18.53684 -18.20430 -17.27197 -17.15883 -16.76875 -16.67349 -16.26078 -15.99921 -15.87325 -15.36994 -15.28882 -15.11806 -15.07702 -14.79331 -14.44988 -14.34596 -13.79046 -13.51391 -13.37094 -13.03863 -12.96001 -12.54923 -12.45490 -12.39588 -12.15461 -11.72875 -11.52507 -10.95134 -10.81303 -10.75795 -10.30123 -10.15473 -9.85401 -9.71024 -9.50128 -9.43566 -8.88724 -8.66836 -6.91264 -5.73510 -3.03277 -0.16926 0.17422 2.11352 2.47007 2.85617 2.95629 3.44642 3.49329 3.51794 3.58899 3.69312 3.78559 3.84987 4.10924 4.54409 4.65394 4.67216 4.78312 4.87472 4.96829 5.05848 5.09084 5.14833 5.18108 5.25531 5.43902 5.56118 5.62617 5.68515 5.94802 5.97594 6.17020 6.31016 6.52318 6.71270 7.02112 7.69507 7.83325 7.96754 8.44396 9.55768 10.13408 10.48780 11.48876 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.002390 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.769471 B =11714.561691 C =12273.276838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.596 5.596 3 C 0.088 3.912 4 C 0.084 3.916 5 H 0.103 0.897 6 O -0.550 6.550 7 C 0.128 3.872 8 N -0.726 5.726 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.556 3.444 18 O -0.511 6.511 19 C -0.151 4.151 20 C -0.059 4.059 21 C -0.146 4.146 22 C 0.122 3.878 23 F -0.115 7.115 24 C 0.022 3.978 25 F -0.113 7.113 26 C 0.159 3.841 27 F -0.093 7.093 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.365 0.635 34 H 0.027 0.973 35 H 0.020 0.980 36 H 0.388 0.612 37 H 0.255 0.745 38 H 0.178 0.822 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.684 -16.646 -17.575 28.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.328 5.328 3 C -0.035 4.035 4 C 0.024 3.976 5 H 0.121 0.879 6 O -0.354 6.354 7 C -0.001 4.001 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.343 3.657 18 O -0.387 6.387 19 C -0.155 4.155 20 C -0.077 4.077 21 C -0.165 4.165 22 C 0.101 3.899 23 F -0.093 7.093 24 C 0.000 4.000 25 F -0.091 7.091 26 C 0.137 3.863 27 F -0.071 7.071 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.211 0.789 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.223 0.777 37 H 0.065 0.935 38 H 0.195 0.805 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.620 -17.036 -17.109 28.225 hybrid contribution 0.419 0.593 0.342 0.803 sum -14.201 -16.442 -16.767 27.444 Atomic orbital electron populations 1.22550 0.79633 1.04888 1.01334 1.47487 1.07033 1.05556 1.72736 1.22301 0.98445 0.83808 0.98915 1.22581 0.85523 0.98539 0.90967 0.87875 1.86652 1.28868 1.62565 1.57283 1.21216 0.96453 0.92529 0.89929 1.42252 1.67213 1.26210 1.01360 1.19210 1.27664 0.98398 0.92167 0.91247 1.24771 1.01618 0.98897 0.95648 1.69684 1.51428 1.38014 0.98642 0.86179 0.79440 0.83052 0.77427 1.21720 1.21731 1.20761 1.17783 0.87065 0.82976 0.77911 1.90911 1.13091 1.86618 1.48051 1.20019 0.96703 0.93145 1.05681 1.22117 0.91605 0.99666 0.94285 1.21141 1.02640 0.89775 1.02956 1.17629 0.89038 0.83278 0.99955 1.91592 1.78790 1.45493 1.93454 1.17427 0.93238 0.82502 1.06808 1.91594 1.84622 1.45489 1.87423 1.17335 0.81678 0.91400 0.95908 1.91686 1.36839 1.96796 1.81759 0.91840 0.89645 0.89647 0.89614 0.88545 0.78865 0.95507 0.96228 0.77719 0.93475 0.80536 0.82108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 8.47 59.85 0.51 0.85 16 2 N -0.60 -6.22 2.80 -182.79 -0.51 -6.73 16 3 C 0.09 1.03 5.09 -4.04 -0.02 1.01 16 4 C 0.08 1.35 3.27 -26.73 -0.09 1.27 16 5 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 6 O -0.55 -8.52 11.92 -35.23 -0.42 -8.94 16 7 C 0.13 2.50 5.90 -4.04 -0.02 2.47 16 8 N -0.73 -18.89 5.55 -59.91 -0.33 -19.22 16 9 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 13 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 C 0.56 7.21 7.47 -12.45 -0.09 7.12 16 18 O -0.51 -8.92 15.28 5.29 0.08 -8.84 16 19 C -0.15 -1.52 5.56 -104.92 -0.58 -2.10 16 20 C -0.06 -0.33 7.54 -39.20 -0.30 -0.62 16 21 C -0.15 -0.71 10.00 -39.58 -0.40 -1.10 16 22 C 0.12 0.94 7.31 -39.25 -0.29 0.65 16 23 F -0.12 -0.95 17.17 2.25 0.04 -0.91 16 24 C 0.02 0.22 7.30 -39.37 -0.29 -0.07 16 25 F -0.11 -1.31 17.09 2.25 0.04 -1.27 16 26 C 0.16 1.85 7.26 -38.92 -0.28 1.57 16 27 F -0.09 -1.38 15.70 2.25 0.04 -1.35 16 28 H 0.06 0.18 7.17 -51.93 -0.37 -0.20 16 29 H 0.09 0.42 4.99 -51.93 -0.26 0.16 16 30 H 0.08 0.51 6.80 -51.93 -0.35 0.16 16 31 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.10 1.24 7.50 -51.93 -0.39 0.85 16 33 H 0.37 4.23 8.82 45.56 0.40 4.63 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.39 10.96 7.67 -40.82 -0.31 10.65 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.18 0.48 4.21 -52.49 -0.22 0.26 16 39 H 0.16 0.26 8.06 -52.48 -0.42 -0.17 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -36.71 343.95 -5.44 -42.15 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.16 Total: 6.98 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.10 Total: 3.48 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.12 Total: -54.19 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.34 Total: -17.78 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.11 Total: -3.53 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.71 -5.44 -42.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717926222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.472 kcal (2) G-P(sol) polarization free energy of solvation -36.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds