Wall clock time and date at job start Tue Mar 31 2020 16:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99806 * 2 1 4 4 C 1.53002 * 109.47037 * 90.00107 * 3 2 1 5 5 H 1.09003 * 109.47095 * 59.99758 * 4 3 2 6 6 O 1.42902 * 109.47281 * 300.00210 * 4 3 2 7 7 C 1.52999 * 109.47051 * 179.97438 * 4 3 2 8 8 N 1.46510 * 109.46893 * 185.00088 * 7 4 3 9 9 C 1.36938 * 119.99623 * 180.02562 * 8 7 4 10 10 H 1.07997 * 119.99831 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99493 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00109 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47360 * 89.99743 * 13 11 9 15 15 H 1.48498 * 109.47481 * 209.99584 * 13 11 9 16 16 H 1.48503 * 109.47253 * 329.99873 * 13 11 9 17 17 C 1.34773 * 120.00020 * 180.02562 * 2 1 3 18 18 O 1.21590 * 120.00112 * 185.39295 * 17 2 1 19 19 C 1.47580 * 120.00142 * 5.38929 * 17 2 1 20 20 C 1.39732 * 120.13071 * 22.28001 * 19 17 2 21 21 C 1.37752 * 119.94474 * 179.97438 * 20 19 17 22 22 C 1.38714 * 120.21448 * 359.97438 * 21 20 19 23 23 F 1.35102 * 119.86737 * 180.02562 * 22 21 20 24 24 C 1.38666 * 120.26451 * 0.02562 * 22 21 20 25 25 F 1.35104 * 119.97090 * 179.97438 * 24 22 21 26 26 C 1.38380 * 120.05272 * 359.72430 * 24 22 21 27 27 F 1.35098 * 120.10762 * 180.27581 * 26 24 22 28 28 H 1.08995 * 109.46879 * 84.05063 * 1 2 3 29 29 H 1.09004 * 109.46681 * 204.05237 * 1 2 3 30 30 H 1.08997 * 109.47173 * 324.04753 * 1 2 3 31 31 H 1.08993 * 109.47357 * 330.00206 * 3 2 1 32 32 H 1.08999 * 109.47154 * 209.99892 * 3 2 1 33 33 H 0.96708 * 113.99565 * 299.99844 * 6 4 3 34 34 H 1.08993 * 109.47217 * 304.99833 * 7 4 3 35 35 H 1.08997 * 109.47090 * 65.00409 * 7 4 3 36 36 H 0.96997 * 119.99752 * 359.97438 * 8 7 4 37 37 H 0.96998 * 119.99842 * 180.02562 * 12 11 9 38 38 H 1.07997 * 120.03039 * 0.02562 * 20 19 17 39 39 H 1.08004 * 119.89284 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 3.0416 0.9507 1.9564 6 8 1.2039 1.8812 2.1162 7 6 3.2180 3.0351 1.4425 8 7 3.5664 3.3978 2.8186 9 6 4.2585 4.5528 3.0679 10 1 4.5477 5.1962 2.2501 11 6 4.5890 4.8961 4.3717 12 7 4.2369 4.1117 5.3682 13 14 5.5336 6.4713 4.7118 14 1 4.5763 7.5866 4.9243 15 1 6.3671 6.2960 5.9282 16 1 6.4084 6.7840 3.5531 17 6 2.1389 -1.1672 -0.0005 18 8 3.3508 -1.1696 0.0984 19 6 1.4060 -2.4424 -0.1211 20 6 0.1285 -2.4664 -0.6869 21 6 -0.5520 -3.6589 -0.7981 22 6 0.0269 -4.8373 -0.3505 23 9 -0.6466 -6.0031 -0.4635 24 6 1.2942 -4.8237 0.2123 25 9 1.8522 -5.9749 0.6467 26 6 1.9897 -3.6327 0.3247 27 9 3.2267 -3.6189 0.8678 28 1 -0.3633 0.1065 -1.0221 29 1 -0.3633 -0.9385 0.4189 30 1 -0.3633 0.8319 0.6033 31 1 1.6085 2.0284 -0.5138 32 1 3.1499 1.1384 -0.5138 33 1 0.6267 2.5439 1.7127 34 1 4.1287 2.9285 0.8533 35 1 2.5934 3.8157 1.0082 36 1 3.3063 2.8200 3.5531 37 1 4.4676 4.3518 6.2793 38 1 -0.3246 -1.5509 -1.0374 39 1 -1.5395 -3.6764 -1.2351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717926222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:15 Heat of formation + Delta-G solvation = -174.498265 kcal Electronic energy + Delta-G solvation = -28239.577132 eV Core-core repulsion = 23540.604140 eV Total energy + Delta-G solvation = -4698.972992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.96339 -50.37500 -49.65293 -41.64938 -39.54514 -38.69401 -36.60161 -35.85572 -33.32088 -32.52795 -31.87912 -30.58559 -28.12301 -27.26742 -25.31270 -24.39011 -24.11790 -22.74910 -21.24409 -19.47068 -19.31547 -19.25063 -18.98001 -18.06516 -17.80500 -17.59017 -17.13721 -16.79305 -16.68722 -16.59932 -16.40001 -16.28328 -16.09340 -15.78182 -15.60817 -15.35441 -15.20426 -14.76612 -14.37843 -14.19604 -13.88292 -13.74575 -13.59737 -13.20298 -13.03980 -13.00050 -12.76354 -12.68025 -12.19285 -12.16994 -12.04709 -11.83406 -11.35176 -11.03356 -10.98620 -10.20281 -10.11430 -9.59823 -9.03080 -7.95850 -5.26241 -0.84300 -0.47134 1.35700 1.45692 1.48722 1.57082 1.68505 2.15951 2.19655 2.54755 2.94074 2.96038 3.08412 3.31143 3.35711 3.49414 3.53223 3.73275 3.97954 4.14386 4.19621 4.23657 4.33466 4.44697 4.56792 4.61535 4.64173 4.67252 4.75071 4.79023 4.92372 5.03717 5.21753 5.34061 5.42406 5.46606 6.19926 6.24766 6.91721 6.95039 7.30718 8.07133 8.29171 9.27845 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.002390 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.769471 B =11714.561691 C =12273.276838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.589 5.589 3 C 0.099 3.901 4 C 0.101 3.899 5 H 0.056 0.944 6 O -0.560 6.560 7 C 0.124 3.876 8 N -0.744 5.744 9 C -0.247 4.247 10 H 0.080 0.920 11 C -0.081 4.081 12 N -0.972 5.972 13 Si 0.979 3.021 14 H -0.282 1.282 15 H -0.298 1.298 16 H -0.268 1.268 17 C 0.545 3.455 18 O -0.574 6.574 19 C -0.162 4.162 20 C -0.033 4.033 21 C -0.113 4.113 22 C 0.125 3.875 23 F -0.117 7.117 24 C 0.002 3.998 25 F -0.130 7.130 26 C 0.122 3.878 27 F -0.127 7.127 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.386 0.614 34 H 0.024 0.976 35 H 0.047 0.953 36 H 0.372 0.628 37 H 0.251 0.749 38 H 0.219 0.781 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.276 -15.323 -20.371 31.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.319 5.319 3 C -0.025 4.025 4 C 0.040 3.960 5 H 0.074 0.926 6 O -0.368 6.368 7 C -0.004 4.004 8 N -0.387 5.387 9 C -0.378 4.378 10 H 0.098 0.902 11 C -0.273 4.273 12 N -0.623 5.623 13 Si 0.807 3.193 14 H -0.209 1.209 15 H -0.225 1.225 16 H -0.193 1.193 17 C 0.334 3.666 18 O -0.454 6.454 19 C -0.166 4.166 20 C -0.050 4.050 21 C -0.131 4.131 22 C 0.104 3.896 23 F -0.095 7.095 24 C -0.019 4.019 25 F -0.109 7.109 26 C 0.101 3.899 27 F -0.105 7.105 28 H 0.131 0.869 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.151 0.849 32 H 0.099 0.901 33 H 0.235 0.765 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.235 0.765 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -18.281 -15.693 -19.975 31.297 hybrid contribution 1.398 0.158 1.136 1.809 sum -16.883 -15.536 -18.838 29.686 Atomic orbital electron populations 1.23020 0.76281 1.05842 1.04640 1.47595 1.09022 1.04166 1.71142 1.22122 0.99271 0.85563 0.95534 1.22190 0.85050 0.95359 0.93368 0.92622 1.86617 1.28576 1.63463 1.58101 1.21466 0.97138 0.95063 0.86694 1.42512 1.67256 1.25431 1.03477 1.19690 1.26726 0.98924 0.92508 0.90176 1.25686 1.03425 1.02548 0.95626 1.69865 1.53458 1.40205 0.98767 0.85064 0.78067 0.79022 0.77132 1.20879 1.22471 1.19258 1.18333 0.86656 0.84534 0.77097 1.90876 1.15915 1.87583 1.51058 1.19969 0.98412 0.90992 1.07244 1.22583 0.89118 1.01574 0.91725 1.21687 1.03791 0.87622 0.99988 1.17865 0.87950 0.84290 0.99487 1.91596 1.78508 1.45976 1.93392 1.17674 0.94464 0.81541 1.08186 1.91536 1.85189 1.46283 1.87904 1.17754 0.81202 0.92959 0.98028 1.91587 1.39106 1.97042 1.82778 0.86934 0.88525 0.89187 0.84948 0.90149 0.76518 0.95828 0.93512 0.79647 0.94059 0.76488 0.77075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 8.47 127.77 1.08 1.36 16 2 N -0.59 -11.00 2.80 -850.49 -2.38 -13.38 16 3 C 0.10 2.13 5.09 86.38 0.44 2.57 16 4 C 0.10 3.25 3.27 30.59 0.10 3.35 16 5 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 6 O -0.56 -16.66 11.92 -148.98 -1.78 -18.44 16 7 C 0.12 4.79 5.90 86.38 0.51 5.30 16 8 N -0.74 -39.38 5.55 -343.44 -1.91 -41.28 16 9 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 10 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 11 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 12 N -0.97 -62.20 13.06 21.65 0.28 -61.92 16 13 Si 0.98 47.10 29.55 68.60 2.03 49.12 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 15 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 C 0.55 14.24 7.47 86.71 0.65 14.89 16 18 O -0.57 -21.61 15.28 -4.00 -0.06 -21.67 16 19 C -0.16 -3.12 5.56 -20.06 -0.11 -3.23 16 20 C -0.03 -0.22 7.54 22.52 0.17 -0.05 16 21 C -0.11 -0.51 10.00 22.27 0.22 -0.29 16 22 C 0.12 1.64 7.31 22.49 0.16 1.81 16 23 F -0.12 -1.66 17.17 44.97 0.77 -0.89 16 24 C 0.00 0.05 7.30 22.41 0.16 0.22 16 25 F -0.13 -3.28 17.09 44.97 0.77 -2.51 16 26 C 0.12 3.04 7.26 22.70 0.16 3.20 16 27 F -0.13 -4.27 15.70 44.97 0.71 -3.57 16 28 H 0.11 -0.25 7.17 -2.39 -0.02 -0.26 16 29 H 0.10 0.45 4.99 -2.38 -0.01 0.44 16 30 H 0.09 0.62 6.80 -2.39 -0.02 0.60 16 31 H 0.13 1.66 8.07 -2.39 -0.02 1.64 16 32 H 0.08 2.05 7.50 -2.39 -0.02 2.03 16 33 H 0.39 7.75 8.82 -74.05 -0.65 7.10 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.37 21.79 7.67 -92.71 -0.71 21.07 16 37 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.22 -0.36 4.21 -2.91 -0.01 -0.37 16 39 H 0.21 -1.01 8.06 -2.91 -0.02 -1.04 16 Total: -1.00 -88.70 343.95 3.08 -85.62 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.21 Total: 17.41 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 4.86 Total: 11.51 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -4.00 Total: -116.58 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.84 Total: -40.11 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 2.25 Total: -6.97 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -88.70 3.08 -85.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717926222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.879 kcal (2) G-P(sol) polarization free energy of solvation -88.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds