Wall clock time and date at job start Tue Mar 31 2020 16:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31163 * 1 3 3 Cl 1.73602 * 120.00020 * 2 1 4 4 C 1.50694 * 120.00022 * 179.97438 * 2 1 3 5 5 N 1.46896 * 109.47230 * 115.00255 * 4 2 1 6 6 C 1.46903 * 111.00464 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47591 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47144 * 64.99513 * 7 6 5 9 9 C 1.52998 * 109.47387 * 184.99997 * 7 6 5 10 10 C 1.52998 * 117.49666 * 248.74675 * 9 7 6 11 11 C 1.52998 * 117.49943 * 180.08353 * 9 7 6 12 12 N 1.46501 * 109.47004 * 304.99851 * 7 6 5 13 13 C 1.46506 * 120.00098 * 300.00173 * 12 7 6 14 14 C 1.34771 * 120.00308 * 120.00028 * 12 7 6 15 15 O 1.21283 * 120.00089 * 359.97438 * 14 12 7 16 16 C 1.50702 * 120.00335 * 180.02562 * 14 12 7 17 17 S 1.81004 * 109.47123 * 179.97438 * 16 14 12 18 18 C 1.76199 * 99.99720 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00414 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99695 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00337 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00004 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46951 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47152 * 119.99850 * 22 20 18 25 25 H 1.48490 * 109.47374 * 240.00146 * 22 20 18 26 26 H 1.07997 * 120.00306 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99695 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47176 * 355.00556 * 4 2 1 29 29 H 1.09001 * 109.47371 * 235.00370 * 4 2 1 30 30 H 1.00900 * 111.00225 * 303.95404 * 5 4 2 31 31 H 1.09001 * 109.46896 * 59.99827 * 6 5 4 32 32 H 1.09003 * 109.46633 * 300.00186 * 6 5 4 33 33 H 1.08999 * 115.54688 * 34.41142 * 9 7 6 34 34 H 1.08992 * 117.50055 * 359.97438 * 10 9 7 35 35 H 1.09001 * 117.49787 * 145.01928 * 10 9 7 36 36 H 1.09000 * 117.49634 * 214.97583 * 11 9 7 37 37 H 1.09000 * 117.50325 * 359.97438 * 11 9 7 38 38 H 1.09001 * 109.47060 * 270.00243 * 13 12 7 39 39 H 1.09004 * 109.47073 * 29.99732 * 13 12 7 40 40 H 1.09000 * 109.47212 * 149.99814 * 13 12 7 41 41 H 1.09000 * 109.47188 * 299.99755 * 16 14 12 42 42 H 1.08996 * 109.47042 * 59.99980 * 16 14 12 43 43 H 0.97002 * 120.00170 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3050 0.0006 5 7 2.8169 -1.4370 -1.2545 6 6 3.5650 -2.7008 -1.2898 7 6 4.3340 -2.8016 -2.6086 8 1 5.0901 -2.0176 -2.6492 9 6 5.0125 -4.1699 -2.7000 10 6 6.5398 -4.2079 -2.6178 11 6 5.8381 -4.4667 -3.9535 12 7 3.4042 -2.6418 -3.7294 13 6 2.2904 -3.5787 -3.8966 14 6 3.5735 -1.6329 -4.6068 15 8 4.4952 -0.8569 -4.4682 16 6 2.6167 -1.4681 -5.7595 17 16 3.1063 -0.0343 -6.7497 18 6 1.8551 -0.0772 -7.9895 19 1 1.0974 -0.8464 -7.9658 20 6 1.8426 0.8784 -8.9962 21 7 2.7657 1.8163 -9.0249 22 14 0.5165 0.8325 -10.3111 23 1 -0.3945 -0.3120 -10.0557 24 1 -0.2586 2.0987 -10.2768 25 1 1.1480 0.6748 -11.6458 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.3602 -2.1316 0.0904 29 1 2.7572 -1.3247 0.8424 30 1 2.2049 -1.3571 -2.0527 31 1 2.8702 -3.5367 -1.2091 32 1 4.2675 -2.7304 -0.4568 33 1 4.4636 -4.9977 -2.2512 34 1 7.0612 -3.2581 -2.4991 35 1 6.9957 -5.0610 -2.1154 36 1 5.8326 -5.4899 -4.3290 37 1 5.8975 -3.6874 -4.7133 38 1 2.6095 -4.4154 -4.5180 39 1 1.9780 -3.9497 -2.9204 40 1 1.4549 -3.0682 -4.3756 41 1 2.6385 -2.3636 -6.3806 42 1 1.6079 -1.3167 -5.3755 43 1 2.7572 2.4838 -9.7287 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725448792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:11 Heat of formation + Delta-G solvation = 7.525789 kcal Electronic energy + Delta-G solvation = -24202.394721 eV Core-core repulsion = 20629.324740 eV Total energy + Delta-G solvation = -3573.069980 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.99635 -37.67341 -37.20135 -36.02611 -34.73393 -32.94803 -32.40399 -30.24112 -28.27094 -26.74178 -25.51257 -25.21896 -22.63428 -22.26699 -20.78454 -20.15339 -18.99786 -17.68393 -17.12480 -16.59309 -15.99295 -15.54649 -15.28137 -15.13104 -14.78794 -14.64475 -14.42451 -13.95455 -13.86938 -13.15839 -13.04407 -12.76159 -12.63709 -12.40597 -12.27415 -12.08354 -11.94112 -11.76531 -11.67660 -11.58094 -11.19648 -11.05897 -10.98842 -10.77587 -10.73936 -10.46457 -10.31301 -9.76547 -9.34306 -9.22800 -9.05086 -8.70176 -8.40393 -8.17723 -6.46116 -6.19274 -3.89090 1.65464 2.21976 2.89723 3.13274 3.22597 3.26149 3.31728 3.56802 3.86116 3.92230 4.22481 4.43463 4.56539 4.78972 4.91500 4.93687 4.98428 5.06261 5.08342 5.12409 5.15837 5.22908 5.28806 5.34918 5.40847 5.53841 5.57703 5.60195 5.70367 5.77893 5.85299 5.91458 5.93518 6.01550 6.09148 6.15754 6.21124 6.67464 6.78117 7.16500 7.59334 7.62206 8.37484 8.64478 9.26122 10.88128 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.008831 B = 0.003789 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.905157 B = 7387.762114 C = 9529.107245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 Cl -0.070 7.070 4 C 0.097 3.903 5 N -0.677 5.677 6 C 0.057 3.943 7 C 0.173 3.827 8 H 0.111 0.889 9 C -0.167 4.167 10 C -0.171 4.171 11 C -0.166 4.166 12 N -0.616 5.616 13 C 0.079 3.921 14 C 0.535 3.465 15 O -0.508 6.508 16 C -0.149 4.149 17 S -0.059 6.059 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.917 3.083 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.349 0.651 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -13.610 19.609 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.092 4.092 3 Cl -0.042 7.042 4 C -0.032 4.032 5 N -0.309 5.309 6 C -0.073 4.073 7 C 0.069 3.931 8 H 0.129 0.871 9 C -0.186 4.186 10 C -0.209 4.209 11 C -0.203 4.203 12 N -0.353 5.353 13 C -0.064 4.064 14 C 0.323 3.677 15 O -0.381 6.381 16 C -0.300 4.300 17 S 0.168 5.832 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.743 3.257 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.169 0.831 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.054 -11.795 19.937 23.165 hybrid contribution -2.766 -1.599 -1.193 3.411 sum -2.820 -13.394 18.744 23.210 Atomic orbital electron populations 1.24049 0.93910 1.03696 1.00087 1.23258 0.93555 0.88733 1.03623 1.98401 1.77995 1.31180 1.96597 1.21064 0.96065 0.91521 0.94521 1.60281 1.31506 1.35418 1.03728 1.22244 0.97194 0.89692 0.98137 1.20579 0.92152 0.95950 0.84412 0.87071 1.22555 0.93664 0.98414 1.03996 1.22995 0.93510 1.03352 1.01006 1.22863 1.03398 1.02598 0.91459 1.47864 1.29480 1.30003 1.27908 1.21707 0.89594 0.93587 1.01548 1.20280 0.85612 0.79508 0.82284 1.90704 1.32085 1.42116 1.73180 1.23549 1.01015 1.06821 0.98594 1.85435 1.40039 1.29911 1.27854 1.22899 1.14963 1.17243 1.13153 0.91009 1.24978 0.96465 0.94565 0.97514 1.70031 1.32726 1.14502 1.32974 0.86146 0.80752 0.78135 0.80634 1.19660 1.20582 1.20586 0.86323 0.86793 0.93466 0.89440 0.83088 0.95057 0.89806 0.87978 0.88434 0.88875 0.88987 0.88379 0.92664 0.91955 0.90826 0.89507 0.89527 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 14.05 28.97 0.41 -1.13 16 2 C -0.06 -0.67 6.01 -36.07 -0.22 -0.89 16 3 Cl -0.07 -0.89 28.99 -51.86 -1.50 -2.40 16 4 C 0.10 0.89 6.00 -4.98 -0.03 0.86 16 5 N -0.68 -7.71 6.48 -115.06 -0.75 -8.45 16 6 C 0.06 0.55 4.96 -3.83 -0.02 0.53 16 7 C 0.17 2.03 2.53 -67.93 -0.17 1.86 16 8 H 0.11 1.69 6.66 -51.93 -0.35 1.34 16 9 C -0.17 -1.61 4.83 -90.62 -0.44 -2.05 16 10 C -0.17 -1.63 10.18 -26.69 -0.27 -1.90 16 11 C -0.17 -1.80 10.13 -26.69 -0.27 -2.07 16 12 N -0.62 -8.14 1.71 -173.93 -0.30 -8.44 16 13 C 0.08 0.79 9.59 59.85 0.57 1.36 16 14 C 0.54 9.90 7.69 -10.99 -0.08 9.81 16 15 O -0.51 -11.49 15.19 5.55 0.08 -11.40 16 16 C -0.15 -3.00 4.71 36.01 0.17 -2.83 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.12 0.77 7.84 -52.49 -0.41 0.36 16 27 H 0.11 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.05 0.34 7.80 -51.93 -0.40 -0.06 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.35 4.44 7.85 -39.29 -0.31 4.13 16 31 H 0.03 0.25 6.88 -51.93 -0.36 -0.11 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.82 8.11 -51.93 -0.42 0.40 16 34 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.48 6.53 -51.93 -0.34 0.14 16 40 H 0.07 0.75 6.44 -51.93 -0.33 0.41 16 41 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 42 H 0.09 1.61 7.40 -51.92 -0.38 1.23 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -33.73 387.41 -9.93 -43.66 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.65 Total: 3.48 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -0.15 Total: -9.36 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.31 Total: -42.43 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.73 -9.93 -43.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725448792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.188 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds