Wall clock time and date at job start Tue Mar 31 2020 16:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31163 * 1 3 3 Cl 1.73602 * 120.00020 * 2 1 4 4 C 1.50694 * 120.00022 * 179.97438 * 2 1 3 5 5 N 1.46896 * 109.47230 * 115.00255 * 4 2 1 6 6 C 1.46903 * 111.00464 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47591 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47144 * 64.99513 * 7 6 5 9 9 C 1.52998 * 109.47387 * 184.99997 * 7 6 5 10 10 C 1.52998 * 117.49666 * 248.74675 * 9 7 6 11 11 C 1.52998 * 117.49943 * 180.08353 * 9 7 6 12 12 N 1.46501 * 109.47004 * 304.99851 * 7 6 5 13 13 C 1.46506 * 120.00098 * 300.00173 * 12 7 6 14 14 C 1.34771 * 120.00308 * 120.00028 * 12 7 6 15 15 O 1.21283 * 120.00089 * 359.97438 * 14 12 7 16 16 C 1.50702 * 120.00335 * 180.02562 * 14 12 7 17 17 S 1.81004 * 109.47123 * 179.97438 * 16 14 12 18 18 C 1.76199 * 99.99720 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00414 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99695 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00337 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00004 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46951 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47152 * 119.99850 * 22 20 18 25 25 H 1.48490 * 109.47374 * 240.00146 * 22 20 18 26 26 H 1.07997 * 120.00306 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99695 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47176 * 355.00556 * 4 2 1 29 29 H 1.09001 * 109.47371 * 235.00370 * 4 2 1 30 30 H 1.00900 * 111.00225 * 303.95404 * 5 4 2 31 31 H 1.09001 * 109.46896 * 59.99827 * 6 5 4 32 32 H 1.09003 * 109.46633 * 300.00186 * 6 5 4 33 33 H 1.08999 * 115.54688 * 34.41142 * 9 7 6 34 34 H 1.08992 * 117.50055 * 359.97438 * 10 9 7 35 35 H 1.09001 * 117.49787 * 145.01928 * 10 9 7 36 36 H 1.09000 * 117.49634 * 214.97583 * 11 9 7 37 37 H 1.09000 * 117.50325 * 359.97438 * 11 9 7 38 38 H 1.09001 * 109.47060 * 270.00243 * 13 12 7 39 39 H 1.09004 * 109.47073 * 29.99732 * 13 12 7 40 40 H 1.09000 * 109.47212 * 149.99814 * 13 12 7 41 41 H 1.09000 * 109.47188 * 299.99755 * 16 14 12 42 42 H 1.08996 * 109.47042 * 59.99980 * 16 14 12 43 43 H 0.97002 * 120.00170 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3050 0.0006 5 7 2.8169 -1.4370 -1.2545 6 6 3.5650 -2.7008 -1.2898 7 6 4.3340 -2.8016 -2.6086 8 1 5.0901 -2.0176 -2.6492 9 6 5.0125 -4.1699 -2.7000 10 6 6.5398 -4.2079 -2.6178 11 6 5.8381 -4.4667 -3.9535 12 7 3.4042 -2.6418 -3.7294 13 6 2.2904 -3.5787 -3.8966 14 6 3.5735 -1.6329 -4.6068 15 8 4.4952 -0.8569 -4.4682 16 6 2.6167 -1.4681 -5.7595 17 16 3.1063 -0.0343 -6.7497 18 6 1.8551 -0.0772 -7.9895 19 1 1.0974 -0.8464 -7.9658 20 6 1.8426 0.8784 -8.9962 21 7 2.7657 1.8163 -9.0249 22 14 0.5165 0.8325 -10.3111 23 1 -0.3945 -0.3120 -10.0557 24 1 -0.2586 2.0987 -10.2768 25 1 1.1480 0.6748 -11.6458 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.3602 -2.1316 0.0904 29 1 2.7572 -1.3247 0.8424 30 1 2.2049 -1.3571 -2.0527 31 1 2.8702 -3.5367 -1.2091 32 1 4.2675 -2.7304 -0.4568 33 1 4.4636 -4.9977 -2.2512 34 1 7.0612 -3.2581 -2.4991 35 1 6.9957 -5.0610 -2.1154 36 1 5.8326 -5.4899 -4.3290 37 1 5.8975 -3.6874 -4.7133 38 1 2.6095 -4.4154 -4.5180 39 1 1.9780 -3.9497 -2.9204 40 1 1.4549 -3.0682 -4.3756 41 1 2.6385 -2.3636 -6.3806 42 1 1.6079 -1.3167 -5.3755 43 1 2.7572 2.4838 -9.7287 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725448792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:11 Heat of formation + Delta-G solvation = -13.962288 kcal Electronic energy + Delta-G solvation = -24203.326514 eV Core-core repulsion = 20629.324740 eV Total energy + Delta-G solvation = -3574.001773 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17833 -38.77128 -38.03254 -36.86999 -35.82837 -34.57476 -33.78140 -31.44844 -29.48499 -27.72008 -27.60505 -26.07250 -23.47151 -23.08771 -21.81978 -20.94125 -20.19969 -19.54504 -18.25980 -17.68759 -17.09590 -16.87470 -16.65334 -16.16157 -16.05476 -15.95020 -15.32722 -15.27153 -14.81408 -14.51540 -14.41159 -14.12946 -13.53875 -13.49130 -13.18413 -13.16768 -13.11204 -12.95053 -12.90897 -12.60915 -12.56727 -12.49089 -12.41004 -12.08168 -11.68488 -11.66134 -11.33663 -11.15100 -11.14688 -10.66967 -10.22718 -10.11592 -9.67147 -9.28674 -8.64915 -8.33585 -6.11254 0.94214 1.27267 1.41247 1.44605 1.46937 1.57490 1.68553 2.09220 2.28436 2.97262 3.00599 3.13899 3.31249 3.69994 3.74644 3.87475 3.96964 4.09481 4.21732 4.22377 4.31665 4.33454 4.35354 4.47465 4.51808 4.58018 4.68275 4.72921 4.79660 4.81032 4.89958 4.96964 5.04432 5.16339 5.26622 5.31865 5.32505 5.42382 5.66953 6.04414 6.20663 6.29813 6.38190 7.07663 7.26562 8.75907 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.008831 B = 0.003789 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.905157 B = 7387.762114 C = 9529.107245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.089 4.089 3 Cl -0.107 7.107 4 C 0.103 3.897 5 N -0.703 5.703 6 C 0.066 3.934 7 C 0.171 3.829 8 H 0.067 0.933 9 C -0.151 4.151 10 C -0.164 4.164 11 C -0.181 4.181 12 N -0.597 5.597 13 C 0.070 3.930 14 C 0.535 3.465 15 O -0.562 6.562 16 C -0.121 4.121 17 S -0.154 6.154 18 C -0.543 4.543 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.149 0.851 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.339 0.661 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 -17.195 20.833 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 Cl -0.079 7.079 4 C -0.025 4.025 5 N -0.335 5.335 6 C -0.063 4.063 7 C 0.068 3.932 8 H 0.086 0.914 9 C -0.171 4.171 10 C -0.202 4.202 11 C -0.218 4.218 12 N -0.331 5.331 13 C -0.072 4.072 14 C 0.322 3.678 15 O -0.440 6.440 16 C -0.272 4.272 17 S 0.073 5.927 18 C -0.691 4.691 19 H 0.100 0.900 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.820 3.180 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.166 0.834 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.158 0.842 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.681 -15.439 21.207 26.368 hybrid contribution -1.970 -0.575 -1.459 2.517 sum -4.651 -16.014 19.748 25.846 Atomic orbital electron populations 1.24332 0.93324 1.04985 0.97308 1.23550 0.94133 0.87924 1.05984 1.98391 1.78886 1.33691 1.96911 1.21091 0.96489 0.91554 0.93366 1.60249 1.32176 1.36844 1.04268 1.22213 0.97542 0.90105 0.96485 1.20673 0.91492 0.96013 0.85064 0.91448 1.22580 0.93787 0.97804 1.02890 1.23044 0.93588 1.03536 1.00008 1.22789 1.05441 1.02290 0.91268 1.47761 1.30145 1.28584 1.26602 1.22030 0.88133 0.92972 1.04050 1.20023 0.84639 0.80432 0.82674 1.90689 1.34133 1.44641 1.74566 1.23352 1.02116 1.03409 0.98319 1.85656 1.41798 1.35043 1.30155 1.23218 1.14916 1.17650 1.13305 0.89990 1.26121 0.99009 0.93870 1.00104 1.70202 1.35051 1.15530 1.34127 0.84922 0.77432 0.78738 0.76957 1.17866 1.19985 1.19965 0.83363 0.87058 0.90441 0.89208 0.84204 0.91828 0.88802 0.84493 0.90276 0.86106 0.87063 0.92434 0.91385 0.88364 0.90857 0.87992 0.87662 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 14.05 67.62 0.95 -1.44 16 2 C -0.09 -1.72 6.01 25.48 0.15 -1.57 16 3 Cl -0.11 -2.80 28.99 -2.72 -0.08 -2.88 16 4 C 0.10 1.62 6.00 85.56 0.51 2.13 16 5 N -0.70 -14.83 6.48 -517.95 -3.36 -18.19 16 6 C 0.07 1.06 4.96 86.30 0.43 1.49 16 7 C 0.17 3.82 2.53 44.99 0.11 3.93 16 8 H 0.07 2.15 6.66 -2.39 -0.02 2.14 16 9 C -0.15 -2.53 4.83 -10.80 -0.05 -2.58 16 10 C -0.16 -2.89 10.18 30.62 0.31 -2.57 16 11 C -0.18 -3.76 10.13 30.62 0.31 -3.45 16 12 N -0.60 -15.04 1.71 -822.58 -1.41 -16.45 16 13 C 0.07 1.14 9.59 127.77 1.23 2.36 16 14 C 0.53 20.23 7.69 87.66 0.67 20.90 16 15 O -0.56 -27.13 15.19 -3.04 -0.05 -27.18 16 16 C -0.12 -4.89 4.71 71.24 0.34 -4.56 16 17 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 18 C -0.54 -31.33 9.50 67.95 0.65 -30.69 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.78 5.49 84.86 0.47 1.24 16 21 N -0.91 -56.95 13.22 21.65 0.29 -56.66 16 22 Si 1.00 43.96 29.55 68.60 2.03 45.98 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 H 0.15 1.31 7.84 -2.91 -0.02 1.29 16 27 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 28 H 0.08 0.76 7.80 -2.39 -0.02 0.74 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.34 8.10 7.85 -89.69 -0.70 7.39 16 31 H 0.06 0.65 6.88 -2.39 -0.02 0.63 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.14 1.44 8.11 -2.39 -0.02 1.42 16 34 H 0.08 1.69 8.05 -2.39 -0.02 1.67 16 35 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.10 0.95 6.53 -2.38 -0.02 0.93 16 40 H 0.07 1.24 6.44 -2.39 -0.02 1.22 16 41 H 0.10 3.79 8.11 -2.39 -0.02 3.77 16 42 H 0.11 3.84 7.40 -2.40 -0.02 3.82 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -79.92 387.41 2.64 -77.29 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.30 Total: 22.77 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 6.07 Total: -14.79 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -4.48 Total: -91.30 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.05 Total: -27.18 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.08 Total: -2.88 kcal Total: -79.92 2.64 -77.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725448792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.326 kcal (2) G-P(sol) polarization free energy of solvation -79.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds