Wall clock time and date at job start Tue Mar 31 2020 16:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33478 * 126.73151 * 2 1 4 4 N 1.20648 * 113.40630 * 179.72761 * 3 2 1 5 5 C 1.30826 * 112.12172 * 0.45887 * 4 3 2 6 6 C 1.48378 * 127.43931 * 179.83590 * 5 4 3 7 7 C 1.39292 * 119.72751 * 334.66087 * 6 5 4 8 8 C 1.38460 * 119.06843 * 179.72612 * 7 6 5 9 9 C 1.38733 * 118.50482 * 0.55809 * 8 7 6 10 10 C 1.38325 * 119.35473 * 359.43702 * 9 8 7 11 11 N 1.31703 * 120.89322 * 0.30050 * 10 9 8 12 12 C 1.37287 * 126.73613 * 179.97438 * 2 1 3 13 13 C 1.47158 * 128.58572 * 0.03946 * 12 2 1 14 14 O 1.21549 * 119.99696 * 269.95160 * 13 12 2 15 15 O 1.34767 * 120.00141 * 89.95461 * 13 12 2 16 16 C 1.45208 * 117.00040 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47173 * 179.97438 * 16 15 13 18 18 O 1.42899 * 109.46999 * 64.99783 * 17 16 15 19 19 C 1.42904 * 113.99814 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47027 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00368 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99962 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00012 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99916 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47131 * 60.00377 * 24 22 20 26 26 H 1.48498 * 109.46647 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46904 * 299.99881 * 24 22 20 28 28 H 1.08998 * 109.47496 * 269.99523 * 1 2 3 29 29 H 1.09001 * 109.47321 * 30.00743 * 1 2 3 30 30 H 1.09010 * 109.47199 * 150.00280 * 1 2 3 31 31 H 1.07994 * 120.46606 * 0.02562 * 7 6 5 32 32 H 1.08003 * 120.74601 * 180.29626 * 8 7 6 33 33 H 1.08002 * 120.32670 * 179.71678 * 9 8 7 34 34 H 1.08001 * 119.55848 * 180.27891 * 10 9 8 35 35 H 1.09004 * 109.46709 * 300.00032 * 16 15 13 36 36 H 1.08999 * 109.47328 * 59.99762 * 16 15 13 37 37 H 1.09000 * 109.46690 * 184.99672 * 17 16 15 38 38 H 1.08994 * 109.47371 * 304.99720 * 17 16 15 39 39 H 1.09002 * 109.47118 * 300.00471 * 19 18 17 40 40 H 1.08998 * 109.46808 * 59.99896 * 19 18 17 41 41 H 0.97000 * 120.00349 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3052 1.0698 0.0000 4 7 3.4792 0.7917 0.0053 5 6 3.6793 -0.5012 0.0000 6 6 4.9815 -1.2124 0.0005 7 6 6.1132 -0.5817 -0.5112 8 6 7.3225 -1.2558 -0.4988 9 6 7.3571 -2.5441 0.0148 10 6 6.1945 -3.1095 0.5067 11 7 5.0582 -2.4437 0.4878 12 6 2.3281 -1.1002 0.0005 13 6 1.9552 -2.5238 0.0003 14 8 1.8015 -3.1118 1.0529 15 8 1.7842 -3.1754 -1.1668 16 6 1.4162 -4.5781 -1.0910 17 6 1.2672 -5.1434 -2.5048 18 8 2.5353 -5.1203 -3.1632 19 6 2.5067 -5.6306 -4.4977 20 6 3.8893 -5.5584 -5.0928 21 1 4.7081 -5.1628 -4.5101 22 6 4.1093 -5.9983 -6.3809 23 7 3.1124 -6.4805 -7.0904 24 14 5.8233 -5.9094 -7.1183 25 1 6.7579 -6.7207 -6.2977 26 1 5.7935 -6.4395 -8.5051 27 1 6.2807 -4.4967 -7.1386 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8901 -0.5138 31 1 6.0492 0.4209 -0.9075 32 1 8.2179 -0.7908 -0.8842 33 1 8.2837 -3.0986 0.0346 34 1 6.2186 -4.1105 0.9114 35 1 2.1919 -5.1289 -0.5588 36 1 0.4702 -4.6773 -0.5588 37 1 0.9053 -6.1701 -2.4493 38 1 0.5557 -4.5373 -3.0654 39 1 2.1707 -6.6674 -4.4831 40 1 1.8208 -5.0348 -5.0998 41 1 3.2670 -6.7896 -7.9967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815219334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:37 Heat of formation + Delta-G solvation = -32.680407 kcal Electronic energy + Delta-G solvation = -27801.509935 eV Core-core repulsion = 23650.543367 eV Total energy + Delta-G solvation = -4150.966568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.14926 -40.25865 -40.03292 -37.05330 -35.95971 -34.60936 -33.92442 -32.77595 -32.65769 -30.95606 -30.16313 -28.37970 -26.97253 -25.65838 -24.33505 -23.62746 -22.48457 -22.12732 -21.25658 -20.39173 -18.29584 -17.98743 -17.52567 -16.97620 -16.51296 -16.37145 -16.23047 -16.07569 -15.47373 -15.27062 -14.65832 -14.42754 -14.21578 -14.10002 -13.76970 -13.59314 -13.58814 -13.28029 -12.97388 -12.81129 -12.56311 -12.02512 -11.99661 -11.64665 -11.42996 -11.02828 -10.93759 -10.86921 -10.78674 -10.55847 -10.37215 -10.06792 -10.04562 -9.69560 -9.64919 -9.15252 -9.01514 -8.88083 -8.21955 -6.12940 -4.14435 0.46538 1.01683 1.10436 1.87679 2.05321 2.44342 2.91468 3.30247 3.32870 3.36649 3.36740 3.63901 3.96703 4.31063 4.51152 4.54851 4.68606 4.72216 4.76047 4.80760 4.89611 5.00883 5.04971 5.12847 5.19337 5.23542 5.23560 5.38776 5.47843 5.55256 5.57456 5.85231 5.85799 5.91610 5.97735 6.07587 6.44071 6.51344 7.04343 7.38961 7.72801 7.76525 7.80616 7.87367 8.11772 8.52154 8.97686 9.50093 10.98629 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.003735 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.365571 B = 7495.088127 C = 9050.643665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 O 0.112 5.888 4 N -0.335 5.335 5 C 0.110 3.890 6 C 0.184 3.816 7 C -0.135 4.135 8 C -0.074 4.074 9 C -0.157 4.157 10 C 0.113 3.887 11 N -0.458 5.458 12 C -0.198 4.198 13 C 0.557 3.443 14 O -0.487 6.487 15 O -0.331 6.331 16 C 0.075 3.925 17 C 0.062 3.938 18 O -0.390 6.390 19 C 0.195 3.805 20 C -0.514 4.514 21 H 0.065 0.935 22 C 0.058 3.942 23 N -0.899 5.899 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.006 0.994 40 H 0.007 0.993 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 12.776 15.992 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.038 4.038 3 O 0.047 5.953 4 N -0.039 5.039 5 C -0.051 4.051 6 C 0.048 3.952 7 C -0.156 4.156 8 C -0.100 4.100 9 C -0.177 4.177 10 C -0.046 4.046 11 N -0.168 5.168 12 C -0.204 4.204 13 C 0.398 3.602 14 O -0.374 6.374 15 O -0.247 6.247 16 C 0.001 3.999 17 C -0.016 4.016 18 O -0.310 6.310 19 C 0.121 3.879 20 C -0.553 4.553 21 H 0.083 0.917 22 C -0.144 4.144 23 N -0.538 5.538 24 Si 0.734 3.266 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.182 0.818 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.876 13.234 16.520 21.185 hybrid contribution 1.130 -0.670 -0.993 1.647 sum 0.254 12.563 15.527 19.975 Atomic orbital electron populations 1.20541 0.82502 1.05714 1.04962 1.24526 0.96104 0.84525 0.98675 1.84513 1.10881 1.32626 1.67307 1.73893 0.95808 1.15025 1.19162 1.22385 0.92139 0.88317 1.02221 1.18144 0.88960 0.90655 0.97484 1.22012 0.92466 1.01480 0.99681 1.21564 0.97838 0.94418 0.96140 1.22335 1.00449 0.96101 0.98838 1.22771 0.86959 0.99467 0.95398 1.67452 1.28990 1.06296 1.14065 1.20835 0.92434 0.92749 1.14385 1.19265 0.73352 0.85122 0.82414 1.90854 1.46196 1.67526 1.32794 1.86729 1.79186 1.26356 1.32395 1.23289 1.00880 0.77194 0.98520 1.22325 0.89559 0.98675 0.91009 1.87937 1.26780 1.85442 1.30825 1.20227 0.98104 0.92841 0.76759 1.20992 0.94148 1.41782 0.98337 0.91699 1.24930 0.97810 0.95058 0.96570 1.69946 1.31208 1.42090 1.10536 0.86408 0.83628 0.78589 0.77947 1.19988 1.21075 1.20032 0.88354 0.88500 0.88479 0.84164 0.84014 0.84019 0.81837 0.90208 0.90222 0.91778 0.93204 0.97583 0.97544 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.32 36.00 0.37 -0.18 16 2 C 0.02 0.28 7.54 -34.66 -0.26 0.02 16 3 O 0.11 1.36 11.04 18.69 0.21 1.56 16 4 N -0.34 -4.71 11.98 34.61 0.41 -4.30 16 5 C 0.11 1.72 7.20 -80.21 -0.58 1.14 16 6 C 0.18 2.89 6.75 -82.95 -0.56 2.33 16 7 C -0.14 -1.73 9.77 -39.11 -0.38 -2.11 16 8 C -0.07 -0.78 10.17 -39.32 -0.40 -1.18 16 9 C -0.16 -1.67 10.11 -39.37 -0.40 -2.07 16 10 C 0.11 1.47 11.18 -17.57 -0.20 1.28 16 11 N -0.46 -7.48 9.79 -9.77 -0.10 -7.58 16 12 C -0.20 -3.05 6.36 -102.71 -0.65 -3.70 16 13 C 0.56 9.51 7.24 34.35 0.25 9.76 16 14 O -0.49 -8.88 16.90 -19.30 -0.33 -9.21 16 15 O -0.33 -6.02 10.20 -43.46 -0.44 -6.46 16 16 C 0.07 1.23 5.86 37.16 0.22 1.44 16 17 C 0.06 1.15 6.33 37.16 0.24 1.38 16 18 O -0.39 -9.65 10.30 -38.80 -0.40 -10.05 16 19 C 0.19 5.38 5.69 36.00 0.20 5.58 16 20 C -0.51 -15.31 9.43 -34.44 -0.32 -15.63 16 21 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 24 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.68 8.10 -51.92 -0.42 0.26 16 31 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.16 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -36.77 375.33 -6.88 -43.66 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -5.04 Total: -3.69 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.57 Total: -0.37 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 1.06 Total: -37.98 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.96 Total: -24.15 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.77 -6.88 -43.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815219334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.975 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds