Wall clock time and date at job start Tue Mar 31 2020 16:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33478 * 126.73151 * 2 1 4 4 N 1.20648 * 113.40630 * 179.72761 * 3 2 1 5 5 C 1.30826 * 112.12172 * 0.45887 * 4 3 2 6 6 C 1.48378 * 127.43931 * 179.83590 * 5 4 3 7 7 C 1.39292 * 119.72751 * 334.66087 * 6 5 4 8 8 C 1.38460 * 119.06843 * 179.72612 * 7 6 5 9 9 C 1.38733 * 118.50482 * 0.55809 * 8 7 6 10 10 C 1.38325 * 119.35473 * 359.43702 * 9 8 7 11 11 N 1.31703 * 120.89322 * 0.30050 * 10 9 8 12 12 C 1.37287 * 126.73613 * 179.97438 * 2 1 3 13 13 C 1.47158 * 128.58572 * 0.03946 * 12 2 1 14 14 O 1.21549 * 119.99696 * 269.95160 * 13 12 2 15 15 O 1.34767 * 120.00141 * 89.95461 * 13 12 2 16 16 C 1.45208 * 117.00040 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47173 * 179.97438 * 16 15 13 18 18 O 1.42899 * 109.46999 * 64.99783 * 17 16 15 19 19 C 1.42904 * 113.99814 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47027 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00368 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99962 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00012 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99916 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47131 * 60.00377 * 24 22 20 26 26 H 1.48498 * 109.46647 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46904 * 299.99881 * 24 22 20 28 28 H 1.08998 * 109.47496 * 269.99523 * 1 2 3 29 29 H 1.09001 * 109.47321 * 30.00743 * 1 2 3 30 30 H 1.09010 * 109.47199 * 150.00280 * 1 2 3 31 31 H 1.07994 * 120.46606 * 0.02562 * 7 6 5 32 32 H 1.08003 * 120.74601 * 180.29626 * 8 7 6 33 33 H 1.08002 * 120.32670 * 179.71678 * 9 8 7 34 34 H 1.08001 * 119.55848 * 180.27891 * 10 9 8 35 35 H 1.09004 * 109.46709 * 300.00032 * 16 15 13 36 36 H 1.08999 * 109.47328 * 59.99762 * 16 15 13 37 37 H 1.09000 * 109.46690 * 184.99672 * 17 16 15 38 38 H 1.08994 * 109.47371 * 304.99720 * 17 16 15 39 39 H 1.09002 * 109.47118 * 300.00471 * 19 18 17 40 40 H 1.08998 * 109.46808 * 59.99896 * 19 18 17 41 41 H 0.97000 * 120.00349 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3052 1.0698 0.0000 4 7 3.4792 0.7917 0.0053 5 6 3.6793 -0.5012 0.0000 6 6 4.9815 -1.2124 0.0005 7 6 6.1132 -0.5817 -0.5112 8 6 7.3225 -1.2558 -0.4988 9 6 7.3571 -2.5441 0.0148 10 6 6.1945 -3.1095 0.5067 11 7 5.0582 -2.4437 0.4878 12 6 2.3281 -1.1002 0.0005 13 6 1.9552 -2.5238 0.0003 14 8 1.8015 -3.1118 1.0529 15 8 1.7842 -3.1754 -1.1668 16 6 1.4162 -4.5781 -1.0910 17 6 1.2672 -5.1434 -2.5048 18 8 2.5353 -5.1203 -3.1632 19 6 2.5067 -5.6306 -4.4977 20 6 3.8893 -5.5584 -5.0928 21 1 4.7081 -5.1628 -4.5101 22 6 4.1093 -5.9983 -6.3809 23 7 3.1124 -6.4805 -7.0904 24 14 5.8233 -5.9094 -7.1183 25 1 6.7579 -6.7207 -6.2977 26 1 5.7935 -6.4395 -8.5051 27 1 6.2807 -4.4967 -7.1386 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3634 -0.8901 -0.5138 31 1 6.0492 0.4209 -0.9075 32 1 8.2179 -0.7908 -0.8842 33 1 8.2837 -3.0986 0.0346 34 1 6.2186 -4.1105 0.9114 35 1 2.1919 -5.1289 -0.5588 36 1 0.4702 -4.6773 -0.5588 37 1 0.9053 -6.1701 -2.4493 38 1 0.5557 -4.5373 -3.0654 39 1 2.1707 -6.6674 -4.4831 40 1 1.8208 -5.0348 -5.0998 41 1 3.2670 -6.7896 -7.9967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815219334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:36 Heat of formation + Delta-G solvation = -56.491020 kcal Electronic energy + Delta-G solvation = -27802.542441 eV Core-core repulsion = 23650.543367 eV Total energy + Delta-G solvation = -4151.999074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.18370 -41.47353 -41.11219 -38.78666 -37.47583 -35.63785 -34.97387 -34.82856 -33.59936 -31.96749 -31.67787 -29.32903 -28.93748 -26.79961 -25.35493 -24.64528 -24.52528 -23.58187 -22.41864 -21.45466 -19.45955 -19.04204 -18.72327 -18.55299 -18.09592 -17.87196 -17.38325 -17.01017 -16.97822 -16.54588 -16.39138 -16.22735 -15.36067 -15.23991 -15.03691 -14.70511 -14.39497 -14.15121 -14.13048 -14.02127 -13.78655 -13.68143 -13.25147 -12.96157 -12.88399 -12.73901 -12.60757 -12.49302 -12.14348 -11.95299 -11.85554 -11.81063 -11.32382 -11.00134 -10.91602 -10.68302 -10.63238 -10.29609 -9.97755 -8.34134 -6.46439 -0.52229 0.04607 0.18039 0.74030 0.87105 1.37184 1.37601 1.42240 1.50744 1.87091 2.32390 2.34686 2.67463 2.99561 3.00309 3.04021 3.45441 3.62051 3.70427 3.87572 3.88863 3.93213 4.02528 4.07859 4.10260 4.17519 4.36718 4.46961 4.49455 4.57409 4.62079 4.65398 4.66205 4.82501 4.99983 5.03991 5.09108 5.14385 5.19535 5.51099 5.57025 5.92919 6.45836 6.51570 6.75623 6.76892 6.87648 7.24954 8.77837 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.003735 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.365571 B = 7495.088127 C = 9050.643665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.055 3.945 3 O 0.122 5.878 4 N -0.343 5.343 5 C 0.091 3.909 6 C 0.148 3.852 7 C -0.143 4.143 8 C -0.070 4.070 9 C -0.147 4.147 10 C 0.089 3.911 11 N -0.499 5.499 12 C -0.248 4.248 13 C 0.567 3.433 14 O -0.506 6.506 15 O -0.350 6.350 16 C 0.078 3.922 17 C 0.054 3.946 18 O -0.412 6.412 19 C 0.209 3.791 20 C -0.551 4.551 21 H 0.055 0.945 22 C 0.011 3.989 23 N -0.927 5.927 24 Si 0.979 3.021 25 H -0.264 1.264 26 H -0.272 1.272 27 H -0.268 1.268 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.151 0.849 32 H 0.181 0.819 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.059 0.941 39 H -0.006 1.006 40 H -0.011 1.011 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 13.571 15.749 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 O 0.057 5.943 4 N -0.046 5.046 5 C -0.069 4.069 6 C 0.012 3.988 7 C -0.164 4.164 8 C -0.096 4.096 9 C -0.167 4.167 10 C -0.069 4.069 11 N -0.210 5.210 12 C -0.254 4.254 13 C 0.409 3.591 14 O -0.395 6.395 15 O -0.267 6.267 16 C 0.005 3.995 17 C -0.023 4.023 18 O -0.332 6.332 19 C 0.134 3.866 20 C -0.589 4.589 21 H 0.073 0.927 22 C -0.188 4.188 23 N -0.566 5.566 24 Si 0.802 3.198 25 H -0.189 1.189 26 H -0.196 1.196 27 H -0.193 1.193 28 H 0.140 0.860 29 H 0.146 0.854 30 H 0.116 0.884 31 H 0.169 0.831 32 H 0.198 0.802 33 H 0.197 0.803 34 H 0.195 0.805 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.012 0.988 40 H 0.007 0.993 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.031 14.039 16.294 21.508 hybrid contribution 0.787 -0.905 -0.869 1.481 sum 0.756 13.134 15.424 20.273 Atomic orbital electron populations 1.20893 0.78902 1.07256 1.06855 1.25290 0.97576 0.83016 0.94908 1.84494 1.10518 1.32611 1.66695 1.73852 0.96642 1.14395 1.19694 1.22674 0.92667 0.88869 1.02725 1.18442 0.89954 0.91108 0.99250 1.22261 0.92663 1.02070 0.99391 1.22066 0.98240 0.94286 0.94985 1.22750 1.00855 0.96229 0.96852 1.23231 0.87339 1.00243 0.96098 1.67378 1.30863 1.07188 1.15597 1.20934 0.93455 0.92716 1.18316 1.19413 0.72393 0.85610 0.81665 1.90818 1.47250 1.68205 1.33182 1.86715 1.79518 1.27022 1.33410 1.23338 1.02473 0.76546 0.97175 1.22674 0.87355 1.00569 0.91664 1.87885 1.30440 1.85357 1.29553 1.19865 0.96930 0.91767 0.78025 1.21305 0.94858 1.43273 0.99456 0.92657 1.25903 1.02511 0.93848 0.96557 1.70043 1.33532 1.41990 1.11059 0.85297 0.77986 0.79039 0.77512 1.18867 1.19629 1.19284 0.85993 0.85360 0.88421 0.83149 0.80193 0.80328 0.80490 0.91289 0.86295 0.89454 0.92274 0.98781 0.99344 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.32 71.23 0.74 -0.21 16 2 C 0.06 1.24 7.54 25.46 0.19 1.43 16 3 O 0.12 2.89 11.04 77.13 0.85 3.74 16 4 N -0.34 -9.76 11.98 -45.00 -0.54 -10.30 16 5 C 0.09 2.95 7.20 44.53 0.32 3.27 16 6 C 0.15 4.84 6.75 41.98 0.28 5.12 16 7 C -0.14 -3.66 9.77 22.58 0.22 -3.44 16 8 C -0.07 -1.37 10.17 22.44 0.23 -1.14 16 9 C -0.15 -2.90 10.11 22.41 0.23 -2.68 16 10 C 0.09 2.37 11.18 84.73 0.95 3.31 16 11 N -0.50 -17.08 9.79 -184.84 -1.81 -18.89 16 12 C -0.25 -7.81 6.36 -18.63 -0.12 -7.93 16 13 C 0.57 19.85 7.24 70.16 0.51 20.36 16 14 O -0.51 -18.93 16.90 19.68 0.33 -18.60 16 15 O -0.35 -13.02 10.20 -54.12 -0.55 -13.57 16 16 C 0.08 2.55 5.86 71.98 0.42 2.97 16 17 C 0.05 2.00 6.33 71.98 0.46 2.46 16 18 O -0.41 -20.93 10.30 -145.57 -1.50 -22.43 16 19 C 0.21 11.87 5.69 71.23 0.41 12.27 16 20 C -0.55 -33.42 9.43 25.60 0.24 -33.18 16 21 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 22 C 0.01 0.62 5.46 84.66 0.46 1.08 16 23 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 24 Si 0.98 44.39 29.54 68.60 2.03 46.42 16 25 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 1.19 8.10 -2.38 -0.02 1.18 16 31 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -82.80 375.33 5.68 -77.12 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.06 Total: 8.02 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.53 Total: 3.70 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -2.06 Total: -84.41 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -0.87 Total: -50.85 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -82.80 5.68 -77.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815219334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.629 kcal (2) G-P(sol) polarization free energy of solvation -82.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds