Wall clock time and date at job start Tue Mar 31 2020 16:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99955 * 2 1 4 4 H 1.48498 * 109.46842 * 266.75903 * 3 2 1 5 5 H 1.48499 * 109.47141 * 26.75567 * 3 2 1 6 6 H 1.48495 * 109.46913 * 146.75878 * 3 2 1 7 7 C 1.37880 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00041 * 353.89354 * 7 2 1 9 9 C 1.50696 * 119.99444 * 173.89572 * 7 2 1 10 10 O 1.42903 * 110.64418 * 325.71430 * 9 7 2 11 11 C 1.55155 * 110.72229 * 88.85551 * 9 7 2 12 12 C 1.55384 * 101.37135 * 153.94411 * 11 9 7 13 13 N 1.47430 * 104.87241 * 323.01797 * 12 11 9 14 14 C 1.34772 * 125.65197 * 204.09345 * 13 12 11 15 15 O 1.21581 * 120.00282 * 180.02562 * 14 13 12 16 16 N 1.34779 * 119.99572 * 0.04106 * 14 13 12 17 17 C 1.46500 * 119.99935 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47458 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.63605 * 305.70207 * 18 17 16 20 20 C 1.53873 * 109.64646 * 66.12835 * 18 17 16 21 21 C 1.54979 * 106.65767 * 167.15384 * 20 18 17 22 22 S 1.83283 * 102.47861 * 317.38336 * 21 20 18 23 23 O 1.42093 * 109.35678 * 269.90080 * 22 21 20 24 24 O 1.42105 * 109.47104 * 136.73514 * 22 21 20 25 25 C 1.54165 * 109.64803 * 185.27813 * 18 17 16 26 26 C 1.47022 * 108.70056 * 24.13028 * 13 12 11 27 27 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 28 28 H 0.96704 * 113.99328 * 295.37100 * 10 9 7 29 29 H 1.09001 * 111.00703 * 272.11469 * 11 9 7 30 30 H 1.09009 * 111.00300 * 35.96387 * 11 9 7 31 31 H 1.08995 * 110.34857 * 204.16837 * 12 11 9 32 32 H 1.09001 * 110.34843 * 81.86966 * 12 11 9 33 33 H 0.97000 * 120.00668 * 0.02562 * 16 14 13 34 34 H 1.09000 * 109.47589 * 300.00739 * 17 16 14 35 35 H 1.09001 * 109.46969 * 59.99919 * 17 16 14 36 36 H 1.08994 * 110.03232 * 286.32819 * 20 18 17 37 37 H 1.09009 * 110.02769 * 47.74772 * 20 18 17 38 38 H 1.09001 * 110.75342 * 199.18124 * 21 20 18 39 39 H 1.08994 * 111.06761 * 75.73548 * 21 20 18 40 40 H 1.09007 * 110.31862 * 331.13393 * 25 18 17 41 41 H 1.08995 * 110.32530 * 93.23041 * 25 18 17 42 42 H 1.09000 * 109.88263 * 239.51773 * 26 13 12 43 43 H 1.09007 * 109.88379 * 118.36154 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5652 2.0068 -1.3978 5 1 1.4140 2.6715 0.6303 6 1 3.5107 1.4609 0.7675 7 6 2.0045 -1.1941 0.0005 8 1 1.4691 -2.1267 0.1004 9 6 3.5051 -1.1978 -0.1383 10 8 3.9346 -0.1362 -0.9929 11 6 4.1853 -1.0925 1.2523 12 6 5.5525 -1.7778 0.9772 13 7 5.2427 -2.8817 0.0505 14 6 5.9767 -4.0004 -0.1119 15 8 5.6245 -4.8482 -0.9090 16 7 7.1009 -4.1793 0.6097 17 6 7.8985 -5.3955 0.4337 18 6 9.1118 -5.3490 1.3646 19 1 9.6678 -4.4267 1.1959 20 6 8.6430 -5.4101 2.8289 21 6 9.9026 -5.6900 3.6873 22 16 10.7740 -6.9697 2.7064 23 8 10.3359 -8.2575 3.1172 24 8 12.1633 -6.6734 2.6689 25 6 10.0233 -6.5614 1.0891 26 6 4.0010 -2.5598 -0.6679 27 1 -0.4850 0.8401 0.0004 28 1 3.6333 -0.2215 -1.9078 29 1 4.3185 -0.0508 1.5442 30 1 3.6189 -1.6386 2.0067 31 1 5.9743 -2.1673 1.9037 32 1 6.2424 -1.0739 0.5117 33 1 7.3816 -3.5032 1.2461 34 1 7.2898 -6.2672 0.6739 35 1 8.2360 -5.4621 -0.6006 36 1 8.2002 -4.4574 3.1192 37 1 7.9173 -6.2135 2.9553 38 1 9.6239 -6.0770 4.6674 39 1 10.5159 -4.7944 3.7867 40 1 9.4344 -7.4021 0.7221 41 1 10.7961 -6.2977 0.3671 42 1 3.2517 -3.3277 -0.4754 43 1 4.1987 -2.4919 -1.7378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364212618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:13 Heat of formation + Delta-G solvation = -140.113549 kcal Electronic energy + Delta-G solvation = -26860.084474 eV Core-core repulsion = 22839.903207 eV Total energy + Delta-G solvation = -4020.181267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.128 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12860 -38.40748 -37.51237 -37.37469 -36.43480 -34.80868 -33.98882 -32.41941 -31.04311 -30.18790 -28.49060 -27.21470 -25.17464 -24.23782 -22.66341 -21.23968 -20.10006 -19.70180 -19.26987 -18.09783 -17.57167 -17.39860 -16.99510 -16.12759 -15.91650 -15.70146 -15.19519 -15.01089 -14.85676 -14.65373 -14.32360 -14.12681 -13.80780 -13.51535 -13.17314 -12.80843 -12.70598 -12.57916 -12.53837 -12.48258 -12.42381 -12.13798 -11.95762 -11.74986 -11.55530 -11.43802 -11.16340 -11.14280 -10.79679 -10.58327 -10.39387 -10.23382 -9.90468 -9.27558 -9.17943 -8.71555 -8.59126 -8.15199 -6.24288 -4.36826 -0.44049 2.02507 2.72562 3.12328 3.38903 3.39899 3.46461 3.48159 3.60486 3.78113 3.97112 3.97627 4.20172 4.24241 4.34325 4.42818 4.66048 4.87525 4.94340 4.96692 5.07099 5.12227 5.20095 5.25396 5.31505 5.48351 5.51671 5.57154 5.69433 5.77241 6.02309 6.38912 6.42967 6.47809 6.57601 6.68159 6.99259 7.19672 7.41360 8.07118 8.16013 8.57064 8.76026 8.77601 9.36385 10.84695 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.002304 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.525842 B =12151.192404 C =12415.933040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.075 3.925 3 Si 0.947 3.053 4 H -0.291 1.291 5 H -0.325 1.325 6 H -0.268 1.268 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.219 3.781 10 O -0.564 6.564 11 C -0.120 4.120 12 C 0.098 3.902 13 N -0.628 5.628 14 C 0.718 3.282 15 O -0.595 6.595 16 N -0.752 5.752 17 C 0.150 3.850 18 C -0.095 4.095 19 H 0.101 0.899 20 C -0.122 4.122 21 C -0.586 4.586 22 S 2.389 3.611 23 O -0.935 6.935 24 O -0.940 6.940 25 C -0.588 4.588 26 C 0.112 3.888 27 H 0.267 0.733 28 H 0.373 0.627 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.395 0.605 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.073 0.927 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.850 -8.062 6.078 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.131 4.131 3 Si 0.782 3.218 4 H -0.218 1.218 5 H -0.256 1.256 6 H -0.194 1.194 7 C -0.591 4.591 8 H 0.099 0.901 9 C 0.178 3.822 10 O -0.372 6.372 11 C -0.159 4.159 12 C -0.025 4.025 13 N -0.365 5.365 14 C 0.420 3.580 15 O -0.474 6.474 16 N -0.410 5.410 17 C 0.024 3.976 18 C -0.115 4.115 19 H 0.120 0.880 20 C -0.160 4.160 21 C -0.716 4.716 22 S 2.573 3.427 23 O -0.933 6.933 24 O -0.937 6.937 25 C -0.718 4.718 26 C -0.011 4.011 27 H 0.077 0.923 28 H 0.221 0.779 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.229 0.771 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.091 0.909 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.408 -9.198 6.269 24.129 hybrid contribution -0.357 1.588 -0.439 1.686 sum 21.051 -7.610 5.829 23.131 Atomic orbital electron populations 1.69969 1.06851 1.27847 1.47496 1.25123 0.94872 1.00468 0.92589 0.85756 0.77876 0.80092 0.78064 1.21833 1.25592 1.19383 1.21180 0.88370 0.95451 1.54083 0.90125 1.20107 0.93988 0.81359 0.86716 1.86120 1.78299 1.49009 1.23769 1.23200 0.92880 1.01009 0.98764 1.22445 0.99498 0.88735 0.91783 1.47706 1.26819 1.18220 1.43740 1.15423 0.79743 0.81603 0.81202 1.90907 1.72310 1.44040 1.40121 1.45082 1.26430 1.23438 1.46041 1.21149 0.89785 0.87571 0.99076 1.21809 0.96541 0.97933 0.95212 0.88033 1.22365 0.96055 1.06282 0.91308 1.30605 1.10360 1.18389 1.12267 1.09084 0.76378 0.77418 0.79855 1.93638 1.83303 1.35991 1.80327 1.93623 1.28695 1.85706 1.85692 1.30565 1.11576 1.07566 1.22055 1.22764 0.83435 0.99587 0.95334 0.92350 0.77895 0.89822 0.89665 0.92344 0.91837 0.77079 0.90889 0.90819 0.88113 0.88743 0.84253 0.84316 0.83826 0.83847 0.90886 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 2 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 3 Si 0.95 22.20 24.88 -169.99 -4.23 17.97 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.32 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.27 -6.00 5.17 56.52 0.29 -5.71 16 7 C -0.55 -14.14 8.81 -34.44 -0.30 -14.44 16 8 H 0.08 2.28 7.80 -52.49 -0.41 1.87 16 9 C 0.22 4.55 0.67 -89.94 -0.06 4.49 16 10 O -0.56 -11.44 8.69 -35.23 -0.31 -11.75 16 11 C -0.12 -2.18 5.91 -24.33 -0.14 -2.32 16 12 C 0.10 1.42 6.58 -2.27 -0.01 1.41 16 13 N -0.63 -10.57 3.33 -175.93 -0.59 -11.15 16 14 C 0.72 11.76 8.49 -86.92 -0.74 11.02 16 15 O -0.60 -12.06 16.67 5.29 0.09 -11.98 16 16 N -0.75 -8.16 5.33 -65.23 -0.35 -8.51 16 17 C 0.15 1.27 4.92 -4.04 -0.02 1.25 16 18 C -0.10 -0.45 2.63 -89.56 -0.24 -0.68 16 19 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 20 C -0.12 -0.50 5.51 -25.23 -0.14 -0.64 16 21 C -0.59 -2.01 7.31 38.20 0.28 -1.73 16 22 S 2.39 13.94 6.10 -107.50 -0.66 13.28 16 23 O -0.94 -9.22 18.14 -57.73 -1.05 -10.26 16 24 O -0.94 -8.94 18.15 -57.73 -1.05 -9.99 16 25 C -0.59 -2.39 6.75 37.77 0.25 -2.14 16 26 C 0.11 2.18 6.21 -3.06 -0.02 2.16 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.37 6.74 8.98 45.56 0.41 7.15 16 29 H 0.08 1.55 6.25 -51.93 -0.32 1.22 16 30 H 0.08 1.56 8.04 -51.92 -0.42 1.14 16 31 H 0.06 0.64 7.30 -51.93 -0.38 0.26 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.39 3.24 6.40 -40.82 -0.26 2.98 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.35 7.68 -51.93 -0.40 -0.04 16 37 H 0.09 0.41 8.08 -51.92 -0.42 -0.01 16 38 H 0.14 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.14 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.14 0.51 7.89 -51.93 -0.41 0.10 16 41 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 1.56 7.65 -51.93 -0.40 1.16 16 43 H 0.06 1.11 8.01 -51.92 -0.42 0.69 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -38.16 353.26 -8.90 -47.06 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.63 Total: 4.58 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.24 Total: 0.28 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.16 Total: -44.52 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -2.31 Total: -43.98 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.23 Total: 17.97 kcal Atomic # 16 Polarization: 13.94 SS G_CDS: -0.66 Total: 13.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.16 -8.90 -47.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364212618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.053 kcal (2) G-P(sol) polarization free energy of solvation -38.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds