Wall clock time and date at job start Tue Mar 31 2020 16:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99955 * 2 1 4 4 H 1.48498 * 109.46842 * 266.75903 * 3 2 1 5 5 H 1.48499 * 109.47141 * 26.75567 * 3 2 1 6 6 H 1.48495 * 109.46913 * 146.75878 * 3 2 1 7 7 C 1.37880 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00041 * 353.89354 * 7 2 1 9 9 C 1.50696 * 119.99444 * 173.89572 * 7 2 1 10 10 O 1.42903 * 110.64418 * 325.71430 * 9 7 2 11 11 C 1.55155 * 110.72229 * 88.85551 * 9 7 2 12 12 C 1.55384 * 101.37135 * 153.94411 * 11 9 7 13 13 N 1.47430 * 104.87241 * 323.01797 * 12 11 9 14 14 C 1.34772 * 125.65197 * 204.09345 * 13 12 11 15 15 O 1.21581 * 120.00282 * 180.02562 * 14 13 12 16 16 N 1.34779 * 119.99572 * 0.04106 * 14 13 12 17 17 C 1.46500 * 119.99935 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47458 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.63605 * 305.70207 * 18 17 16 20 20 C 1.53873 * 109.64646 * 66.12835 * 18 17 16 21 21 C 1.54979 * 106.65767 * 167.15384 * 20 18 17 22 22 S 1.83283 * 102.47861 * 317.38336 * 21 20 18 23 23 O 1.42093 * 109.35678 * 269.90080 * 22 21 20 24 24 O 1.42105 * 109.47104 * 136.73514 * 22 21 20 25 25 C 1.54165 * 109.64803 * 185.27813 * 18 17 16 26 26 C 1.47022 * 108.70056 * 24.13028 * 13 12 11 27 27 H 0.97001 * 119.99986 * 359.97438 * 1 2 3 28 28 H 0.96704 * 113.99328 * 295.37100 * 10 9 7 29 29 H 1.09001 * 111.00703 * 272.11469 * 11 9 7 30 30 H 1.09009 * 111.00300 * 35.96387 * 11 9 7 31 31 H 1.08995 * 110.34857 * 204.16837 * 12 11 9 32 32 H 1.09001 * 110.34843 * 81.86966 * 12 11 9 33 33 H 0.97000 * 120.00668 * 0.02562 * 16 14 13 34 34 H 1.09000 * 109.47589 * 300.00739 * 17 16 14 35 35 H 1.09001 * 109.46969 * 59.99919 * 17 16 14 36 36 H 1.08994 * 110.03232 * 286.32819 * 20 18 17 37 37 H 1.09009 * 110.02769 * 47.74772 * 20 18 17 38 38 H 1.09001 * 110.75342 * 199.18124 * 21 20 18 39 39 H 1.08994 * 111.06761 * 75.73548 * 21 20 18 40 40 H 1.09007 * 110.31862 * 331.13393 * 25 18 17 41 41 H 1.08995 * 110.32530 * 93.23041 * 25 18 17 42 42 H 1.09000 * 109.88263 * 239.51773 * 26 13 12 43 43 H 1.09007 * 109.88379 * 118.36154 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5652 2.0068 -1.3978 5 1 1.4140 2.6715 0.6303 6 1 3.5107 1.4609 0.7675 7 6 2.0045 -1.1941 0.0005 8 1 1.4691 -2.1267 0.1004 9 6 3.5051 -1.1978 -0.1383 10 8 3.9346 -0.1362 -0.9929 11 6 4.1853 -1.0925 1.2523 12 6 5.5525 -1.7778 0.9772 13 7 5.2427 -2.8817 0.0505 14 6 5.9767 -4.0004 -0.1119 15 8 5.6245 -4.8482 -0.9090 16 7 7.1009 -4.1793 0.6097 17 6 7.8985 -5.3955 0.4337 18 6 9.1118 -5.3490 1.3646 19 1 9.6678 -4.4267 1.1959 20 6 8.6430 -5.4101 2.8289 21 6 9.9026 -5.6900 3.6873 22 16 10.7740 -6.9697 2.7064 23 8 10.3359 -8.2575 3.1172 24 8 12.1633 -6.6734 2.6689 25 6 10.0233 -6.5614 1.0891 26 6 4.0010 -2.5598 -0.6679 27 1 -0.4850 0.8401 0.0004 28 1 3.6333 -0.2215 -1.9078 29 1 4.3185 -0.0508 1.5442 30 1 3.6189 -1.6386 2.0067 31 1 5.9743 -2.1673 1.9037 32 1 6.2424 -1.0739 0.5117 33 1 7.3816 -3.5032 1.2461 34 1 7.2898 -6.2672 0.6739 35 1 8.2360 -5.4621 -0.6006 36 1 8.2002 -4.4574 3.1192 37 1 7.9173 -6.2135 2.9553 38 1 9.6239 -6.0770 4.6674 39 1 10.5159 -4.7944 3.7867 40 1 9.4344 -7.4021 0.7221 41 1 10.7961 -6.2977 0.3671 42 1 3.2517 -3.3277 -0.4754 43 1 4.1987 -2.4919 -1.7378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364212618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:12 Heat of formation + Delta-G solvation = -174.088306 kcal Electronic energy + Delta-G solvation = -26861.557730 eV Core-core repulsion = 22839.903207 eV Total energy + Delta-G solvation = -4021.654523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.128 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37115 -39.57273 -38.32954 -38.02817 -37.01794 -36.30886 -34.90771 -34.43829 -31.95656 -31.15289 -29.94427 -28.14801 -26.60799 -24.85985 -23.99552 -21.72684 -21.54011 -21.03287 -19.76478 -19.62702 -18.97929 -17.92492 -17.61433 -17.15653 -16.89773 -16.77701 -16.62651 -16.50613 -15.79159 -15.53320 -15.10301 -14.90730 -14.83407 -14.66472 -14.50506 -14.03223 -13.98218 -13.78263 -13.23688 -13.22836 -13.17348 -13.07966 -12.98319 -12.82083 -12.74460 -12.46483 -12.29054 -12.19646 -11.83797 -11.82625 -11.64886 -11.32322 -11.20483 -11.15363 -10.62145 -10.38693 -10.22847 -9.43594 -8.32365 -6.47328 -0.86193 1.52563 1.54790 1.55753 1.71902 1.77042 2.13780 2.46896 2.68862 2.99983 3.03541 3.06971 3.43074 3.53097 3.59257 3.68015 3.83505 3.89585 4.07431 4.09944 4.28455 4.33633 4.46258 4.48617 4.62675 4.65662 4.75934 4.85203 4.86560 4.89735 4.98303 5.06613 5.14694 5.17900 5.24497 5.45173 5.48355 5.55439 6.06270 6.11729 6.59986 6.94808 7.02490 7.31050 7.55558 8.80973 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.002304 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.525842 B =12151.192404 C =12415.933040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.023 3.977 3 Si 1.009 2.991 4 H -0.284 1.284 5 H -0.338 1.338 6 H -0.244 1.244 7 C -0.551 4.551 8 H 0.036 0.964 9 C 0.218 3.782 10 O -0.560 6.560 11 C -0.121 4.121 12 C 0.107 3.893 13 N -0.631 5.631 14 C 0.714 3.286 15 O -0.641 6.641 16 N -0.728 5.728 17 C 0.144 3.856 18 C -0.087 4.087 19 H 0.129 0.871 20 C -0.129 4.129 21 C -0.561 4.561 22 S 2.388 3.612 23 O -0.986 6.986 24 O -0.983 6.983 25 C -0.576 4.576 26 C 0.120 3.880 27 H 0.267 0.733 28 H 0.382 0.618 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.413 0.587 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.147 0.853 41 H 0.161 0.839 42 H 0.042 0.958 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.931 -6.369 7.144 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.177 4.177 3 Si 0.841 3.159 4 H -0.211 1.211 5 H -0.270 1.270 6 H -0.168 1.168 7 C -0.589 4.589 8 H 0.054 0.946 9 C 0.177 3.823 10 O -0.369 6.369 11 C -0.159 4.159 12 C -0.014 4.014 13 N -0.368 5.368 14 C 0.415 3.585 15 O -0.524 6.524 16 N -0.385 5.385 17 C 0.019 3.981 18 C -0.107 4.107 19 H 0.147 0.853 20 C -0.167 4.167 21 C -0.693 4.693 22 S 2.577 3.423 23 O -0.983 6.983 24 O -0.980 6.980 25 C -0.708 4.708 26 C -0.004 4.004 27 H 0.076 0.924 28 H 0.231 0.769 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.250 0.750 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.109 0.891 38 H 0.169 0.831 39 H 0.181 0.819 40 H 0.165 0.835 41 H 0.179 0.821 42 H 0.061 0.939 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 24.587 -7.542 7.372 26.753 hybrid contribution -1.399 0.977 -0.808 1.888 sum 23.187 -6.565 6.564 24.977 Atomic orbital electron populations 1.70107 1.08801 1.28598 1.50275 1.25953 0.95335 1.03996 0.92418 0.84753 0.77120 0.75489 0.78533 1.21075 1.27033 1.16838 1.21428 0.91307 0.93515 1.52643 0.94596 1.19955 0.91258 0.82292 0.88748 1.86074 1.77830 1.48525 1.24457 1.23103 0.94809 1.01757 0.96214 1.22549 0.97464 0.88084 0.93341 1.47614 1.25930 1.19235 1.44031 1.15642 0.80745 0.80762 0.81313 1.90880 1.73703 1.45487 1.42296 1.44891 1.24465 1.24405 1.44789 1.21321 0.90663 0.86217 0.99881 1.21814 0.94974 0.99218 0.94665 0.85337 1.22485 0.96218 1.07232 0.90804 1.30446 1.09502 1.17506 1.11880 1.08847 0.75644 0.77186 0.80623 1.93572 1.83707 1.39507 1.81501 1.93565 1.31671 1.86163 1.86581 1.30453 1.11797 1.07680 1.20835 1.22349 0.84440 0.98004 0.95603 0.92436 0.76889 0.89428 0.90373 0.87730 0.90009 0.74976 0.91797 0.91464 0.86227 0.89114 0.83086 0.81895 0.83489 0.82127 0.93932 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.16 13.96 21.45 0.30 -55.86 16 2 C 0.02 1.22 5.46 84.65 0.46 1.69 16 3 Si 1.01 44.99 24.88 68.60 1.71 46.70 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.34 -15.77 7.11 99.48 0.71 -15.06 16 6 H -0.24 -9.82 5.17 99.48 0.51 -9.30 16 7 C -0.55 -28.82 8.81 25.60 0.23 -28.59 16 8 H 0.04 2.15 7.80 -2.91 -0.02 2.12 16 9 C 0.22 8.84 0.67 -10.35 -0.01 8.83 16 10 O -0.56 -21.27 8.69 -148.98 -1.29 -22.56 16 11 C -0.12 -4.01 5.91 32.15 0.19 -3.82 16 12 C 0.11 2.59 6.58 87.02 0.57 3.17 16 13 N -0.63 -19.68 3.33 -828.79 -2.76 -22.44 16 14 C 0.71 21.75 8.49 179.05 1.52 23.27 16 15 O -0.64 -25.68 16.67 -3.97 -0.07 -25.74 16 16 N -0.73 -13.00 5.33 -478.54 -2.55 -15.56 16 17 C 0.14 2.01 4.92 86.38 0.43 2.44 16 18 C -0.09 -0.47 2.63 -10.10 -0.03 -0.49 16 19 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 20 C -0.13 -0.51 5.51 31.57 0.17 -0.34 16 21 C -0.56 -1.72 7.31 72.66 0.53 -1.19 16 22 S 2.39 24.54 6.10 -56.49 -0.34 24.20 16 23 O -0.99 -19.43 18.14 -127.47 -2.31 -21.74 16 24 O -0.98 -17.85 18.15 -127.47 -2.31 -20.16 16 25 C -0.58 -3.24 6.75 72.38 0.49 -2.75 16 26 C 0.12 4.68 6.21 86.73 0.54 5.22 16 27 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.38 13.06 8.98 -74.05 -0.67 12.40 16 29 H 0.09 2.87 6.25 -2.39 -0.01 2.86 16 30 H 0.08 2.70 8.04 -2.38 -0.02 2.68 16 31 H 0.10 1.62 7.30 -2.39 -0.02 1.60 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.41 4.44 6.40 -92.71 -0.59 3.84 16 34 H 0.06 1.04 8.10 -2.39 -0.02 1.03 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.12 0.13 7.68 -2.39 -0.02 0.11 16 37 H 0.09 0.49 8.08 -2.38 -0.02 0.47 16 38 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.16 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.15 0.80 7.89 -2.38 -0.02 0.78 16 41 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.04 1.89 7.65 -2.39 -0.02 1.87 16 43 H 0.05 2.13 8.01 -2.38 -0.02 2.11 16 Total: -1.00 -87.22 353.26 -4.95 -92.17 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -0.41 Total: 13.57 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 5.09 Total: 7.42 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -5.01 Total: -93.85 kcal Atomic # 8 Polarization: -84.22 SS G_CDS: -5.99 Total: -90.21 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.71 Total: 46.70 kcal Atomic # 16 Polarization: 24.54 SS G_CDS: -0.34 Total: 24.20 kcal Total: -87.22 -4.95 -92.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364212618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.919 kcal (2) G-P(sol) polarization free energy of solvation -87.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds